mRNA_E-siliculosus-1a_F_contig1567.3278.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1567.3278.1
Unique NamemRNA_E-siliculosus-1a_F_contig1567.3278.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1567.3278.1 vs. uniprot
Match: D7G8J2_ECTSI (Aminopeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J2_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 2.610e-56
Identity = 108/120 (90.00%), Postives = 110/120 (91.67%), Query Frame = 1 
Query:  220 MDRLRADAHGPCLGIPEGYLDSVVVKAYHVDIALAVEEAAFSGLVRIPVHVKSGAACRTFYLHAAAGLRVSAASVNGVPAVVVRGRATSIEVPEEAAVCGGASAVIEVHFAGLISKTRTD 579
            MDRLRADAHGPCLGIPEGYLDSVVVKAYHVDIALAVEEAAFSGLVRIPVHVKSGAACRTFYLHAAAGLRV AASVNGVPAVVVRGRATSIEVPEEAAVCGGASAVI+      I +T  D
Sbjct:    1 MDRLRADAHGPCLGIPEGYLDSVVVKAYHVDIALAVEEAAFSGLVRIPVHVKSGAACRTFYLHAAAGLRVPAASVNGVPAVVVRGRATSIEVPEEAAVCGGASAVIQAISNTPILRTEDD 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8J2_ECTSI2.610e-5690.00Aminopeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1567contigE-siliculosus-1a_F_contig1567:27768..28442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size456
Model size677
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EC3.6.1.1
EggNOG OGsCOG0308@1,KOG1046@2759
EggNOG free text desc.metalloaminopeptidase activity
KEGG Pathwayko00190,map00190
KEGG koko:K01507
Seed eggNOG ortholog2880.D7G8J2
Seed ortholog evalue1.3e-49
Seed ortholog score202.6
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928078.993185-UTR-E-siliculosus-1a_F_contig1567:27767..279861622928078.993185-UTR-E-siliculosus-1a_F_contig1567:27767..27986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1567 27768..27986 +
1696318797.9382308-UTR-E-siliculosus-1a_F_contig1567:27767..279861696318797.9382308-UTR-E-siliculosus-1a_F_contig1567:27767..27986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1567 27768..27986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928079.008363-CDS-E-siliculosus-1a_F_contig1567:27986..284421622928079.008363-CDS-E-siliculosus-1a_F_contig1567:27986..28442Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 27987..28442 +
1696318797.9474938-CDS-E-siliculosus-1a_F_contig1567:27986..284421696318797.9474938-CDS-E-siliculosus-1a_F_contig1567:27986..28442Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 27987..28442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1567.3278.1prot_E-siliculosus-1a_F_contig1567.3278.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1567 27987..28442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1567.3278.1

>prot_E-siliculosus-1a_F_contig1567.3278.1 ID=prot_E-siliculosus-1a_F_contig1567.3278.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3278.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp
MDRLRADAHGPCLGIPEGYLDSVVVKAYHVDIALAVEEAAFSGLVRIPVH
VKSGAACRTFYLHAAAGLRVSAASVNGVPAVVVRGRATSIEVPEEAAVCG
GASAVIEVHFAGLISKTRTDGLYMIETVDKKSDAGGEKAVAGRLRAEGSQ
GT
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mRNA from alignment at E-siliculosus-1a_F_contig1567:27768..28442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1567.3278.1 ID=mRNA_E-siliculosus-1a_F_contig1567.3278.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3278.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=675bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1567:27768..28442+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCGCGCCCTAAAGACCTTGTCTACCTATCTATCGAGAGGGAGTCATCAC
AAGTACGGCATACTCTCTGCTGCGCCGGCTTTCCATGGGTTGTTAGCAGC
GTACGGCTCATCGCGGGGGTGAGAACCCTACAACGGCAGACGCCTGCTAT
TTGTAATTGCCCGCTATCCTTCCGCGCAGGTGCCGCCCCCCACGCAGGTG
GTGGTGGCGTGTGCGCCTAATGGATCGCTTACGAGCCGACGCGCACGGCC
CTTGCCTCGGCATACCCGAGGGGTACCTGGACAGCGTCGTGGTCAAGGCT
TACCACGTGGACATCGCTCTGGCCGTAGAGGAGGCGGCGTTCTCGGGGCT
CGTCAGGATTCCGGTGCACGTGAAGTCGGGGGCGGCCTGCAGAACGTTCT
ATCTCCATGCCGCCGCGGGGCTGCGGGTTTCAGCCGCGAGCGTGAACGGC
GTGCCCGCCGTCGTCGTGCGGGGCCGTGCGACGAGCATCGAGGTGCCCGA
GGAAGCTGCAGTTTGCGGCGGCGCGTCGGCGGTCATTGAGGTTCATTTTG
CGGGGTTGATCAGCAAGACGCGGACCGACGGCTTGTACATGATCGAGACC
GTGGACAAGAAGTCAGATGCAGGTGGGGAGAAAGCAGTAGCAGGAAGGCT
GCGGGCGGAAGGCAGCCAAGGGACA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1567:27768..28442+

>mRNA_E-siliculosus-1a_F_contig1567.3278.1 ID=mRNA_E-siliculosus-1a_F_contig1567.3278.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3278.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1567:27768..28442+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATCGCTTACGAGCCGACGCGCACGGCCCTTGCCTCGGCATACCCGA
GGGGTACCTGGACAGCGTCGTGGTCAAGGCTTACCACGTGGACATCGCTC
TGGCCGTAGAGGAGGCGGCGTTCTCGGGGCTCGTCAGGATTCCGGTGCAC
GTGAAGTCGGGGGCGGCCTGCAGAACGTTCTATCTCCATGCCGCCGCGGG
GCTGCGGGTTTCAGCCGCGAGCGTGAACGGCGTGCCCGCCGTCGTCGTGC
GGGGCCGTGCGACGAGCATCGAGGTGCCCGAGGAAGCTGCAGTTTGCGGC
GGCGCGTCGGCGGTCATTGAGGTTCATTTTGCGGGGTTGATCAGCAAGAC
GCGGACCGACGGCTTGTACATGATCGAGACCGTGGACAAGAAGTCAGATG
CAGGTGGGGAGAAAGCAGTAGCAGGAAGGCTGCGGGCGGAAGGCAGCCAA
GGGACAATGGATCGCTTACGAGCCGACGCGCACGGCCCTTGCCTCGGCAT
ACCCGAGGGGTACCTGGACAGCGTCGTGGTCAAGGCTTACCACGTGGACA
TCGCTCTGGCCGTAGAGGAGGCGGCGTTCTCGGGGCTCGTCAGGATTCCG
GTGCACGTGAAGTCGGGGGCGGCCTGCAGAACGTTCTATCTCCATGCCGC
CGCGGGGCTGCGGGTTTCAGCCGCGAGCGTGAACGGCGTGCCCGCCGTCG
TCGTGCGGGGCCGTGCGACGAGCATCGAGGTGCCCGAGGAAGCTGCAGTT
TGCGGCGGCGCGTCGGCGGTCATTGAGGTTCATTTTGCGGGGTTGATCAG
CAAGACGCGGACCGACGGCTTGTACATGATCGAGACCGTGGACAAGAAGT
CAGATGCAGGTGGGGAGAAAGCAGTAGCAGGAAGGCTGCGGGCGGAAGGC
AGCCAAGGGACA
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