mRNA_E-siliculosus-1a_F_contig1567.3277.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1567.3277.1
Unique NamemRNA_E-siliculosus-1a_F_contig1567.3277.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1567.3277.1 vs. uniprot
Match: D7G8J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8J3_ECTSI)

HSP 1 Score: 507 bits (1306), Expect = 5.430e-181
Identity = 265/274 (96.72%), Postives = 268/274 (97.81%), Query Frame = 1 
Query:    1 MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYYGDLQWYAPDGVDGDKKDTLLIIAVKTNNAKLVEWMLTLDGLDTAKENGKGLNAMAVAKAIGRENLLLGMAVCDDGLSGGVDASEKSAASAADPNAPPLPPDRAAADEAAREVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQKMLKEKDANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWGRADHYDAESGGAGAAASAAPENGS 822
            MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYYGDLQWYAPDGVDGDKKDTLLIIAVKTNN KLVEWMLTLDGLDTAKENGKGLNAMAVAKAIGRENLLLGMA CDDGL GGVDAS KSAASAADPNAPPLPPD+AAADEA  EVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQ+MLKEKDANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWGRADHYDAE+GGAGAAASAAPENGS
Sbjct:    1 MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYYGDLQWYAPDGVDGDKKDTLLIIAVKTNNVKLVEWMLTLDGLDTAKENGKGLNAMAVAKAIGRENLLLGMAACDDGLPGGVDASAKSAASAADPNAPPLPPDKAAADEATMEVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQQMLKEKDANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWGRADHYDAENGGAGAAASAAPENGS 274
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BLAST of mRNA_E-siliculosus-1a_F_contig1567.3277.1 vs. uniprot
Match: A0A836CH98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH98_9STRA)

HSP 1 Score: 200 bits (508), Expect = 5.870e-60
Identity = 114/255 (44.71%), Postives = 157/255 (61.57%), Query Frame = 1 
Query:    1 MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYYGDLQWYAPDGVDGDKKDTLLIIAVKTNNAKLVEWMLTLDGLDTAKENGKGLNAMAVAKAIGRENLLLGMAV---CDDGLSGGVDASEKSAASAADPNAPPLPPDRAAADEAAREVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQKMLKEKDANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWGRA 756
            MTDRK+FDLF+GARE D   C+ AYE GA++NF ++G++AT+G  GRWYYGDL W+APD VD +K +TLL+IA+K NN  LV+W+LTLD LD    N KG +A  VA   GR ++L  +A                         P A    P   +AD  A E+ R   A+K+L  +ND KE +    + + +  ++++KEKDA IGELQ  V  +E+E+IVM+HK+ +L+  L EYTD RQ DA  +  WG+A
Sbjct:    1 MTDRKVFDLFFGAREGDLSACKAAYEAGANVNFQYEGKKATRGAGGRWYYGDLIWHAPDSVDANKNETLLMIAIKANNKPLVDWLLTLDRLDVTVRNIKGQDAFQVATEFGRSSMLTMVATPPPAPAAXXXXXXXXXXXXXXXXXPAAVTSAPPSVSAD--AEEIKRQCNAIKLLTISNDTKEEENRALKAEVERCKQVIKEKDATIGELQNTVFSKEREMIVMMHKMEQLQATLAEYTDVRQGDAAVFEQWGQA 253
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8J3_ECTSI5.430e-18196.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CH98_9STRA5.870e-6044.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1567contigE-siliculosus-1a_F_contig1567:24571..27172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size825
Model size825
Exons4
Ec32 orthologEc-14_003220.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1567.3277.1prot_E-siliculosus-1a_F_contig1567.3277.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1567 24571..27172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928078.9037042-CDS-E-siliculosus-1a_F_contig1567:24570..247651622928078.9037042-CDS-E-siliculosus-1a_F_contig1567:24570..24765Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 24571..24765 -
1696318797.8933-CDS-E-siliculosus-1a_F_contig1567:24570..247651696318797.8933-CDS-E-siliculosus-1a_F_contig1567:24570..24765Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 24571..24765 -
1622928078.920568-CDS-E-siliculosus-1a_F_contig1567:25068..251791622928078.920568-CDS-E-siliculosus-1a_F_contig1567:25068..25179Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 25069..25179 -
1696318797.9104607-CDS-E-siliculosus-1a_F_contig1567:25068..251791696318797.9104607-CDS-E-siliculosus-1a_F_contig1567:25068..25179Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 25069..25179 -
1622928078.9328597-CDS-E-siliculosus-1a_F_contig1567:25483..258591622928078.9328597-CDS-E-siliculosus-1a_F_contig1567:25483..25859Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 25484..25859 -
1696318797.9224-CDS-E-siliculosus-1a_F_contig1567:25483..258591696318797.9224-CDS-E-siliculosus-1a_F_contig1567:25483..25859Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 25484..25859 -
1622928078.9453683-CDS-E-siliculosus-1a_F_contig1567:27029..271721622928078.9453683-CDS-E-siliculosus-1a_F_contig1567:27029..27172Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 27030..27172 -
1696318797.9300275-CDS-E-siliculosus-1a_F_contig1567:27029..271721696318797.9300275-CDS-E-siliculosus-1a_F_contig1567:27029..27172Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 27030..27172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1567.3277.1

>prot_E-siliculosus-1a_F_contig1567.3277.1 ID=prot_E-siliculosus-1a_F_contig1567.3277.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3277.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=275bp
MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYY
GDLQWYAPDGVDGDKKDTLLIIAVKTNNAKLVEWMLTLDGLDTAKENGKG
LNAMAVAKAIGRENLLLGMAVCDDGLSGGVDASEKSAASAADPNAPPLPP
DRAAADEAAREVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQKMLKEK
DANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWG
RADHYDAESGGAGAAASAAPENGS*
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mRNA from alignment at E-siliculosus-1a_F_contig1567:24571..27172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1567.3277.1 ID=mRNA_E-siliculosus-1a_F_contig1567.3277.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3277.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2602bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1567:24571..27172- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGGACCGCAAGATCTTCGATCTCTTTTATGGGGCAAGGGAGAACGA
CCATGATATGTGCCGCCGTGCGTACGAGACCGGCGCTGACATCAACTTTG
CCTTCGACGGGCGCCGAGCAACTAAGGGCGGGGCCGGACGATGGTACGCT
ACATGACAGCTGTGCACACACCAATGATATTATGCGAAAAGTTGTCTTTC
GTTTTGCTTTCGGGGTCATCAGGTCTTCTGTTTCGCCGTCACAAGACCTC
TGTGGGCACTGACTGCTGTTACATAGACAGCGCACAAATATTAATAGCCT
ACAATAGACTAGCCAAATAACGTTGCTGACCTTGTAGGGTATTTCGCTGG
CTACAGTAGACCACTGCGGCGAACGAAAGATATGTGTAGTCTCTGGGGTT
CGATCCCCAGCTCTCTGCCGCCAGCTGACTGCGTAGGCTAGCTGTAGACG
CTGCCTACTCAACGAAGGGAACGTCGAGGGTTCCTTTCTCGTCATACACG
TCTTTTCTGCCTGAGATACACTGAGAACTGAGCTGCCGTACATCATAAAG
TCGTCAAGCAGCGCTGGCGAGGGGCACCCCCGGCGGATATTCTCTAGTAT
TATGCTGGCAAAGAGCTGAGAACCGAACGCCAGAAACTTGTATTTTGTTA
CATGTGGCCCACCGGCACCCCAAACATCCATCCCCTTGTTAGCAGAGCTT
TACGGCAGCATCAGAGAACGAAGGGCACCTCGTGACAGCTGACGTTCCGC
AGCTATAGAAGTATACCAAGCATCGAGGCCATGGATATTGTGCCCCTGTA
GCTATGTAATCGATGGCATGGAACTACAACAAACAGCTGTACTATATAGT
GGTCCCTAAAACTTTCGCCAAGAACGGGACCGTGGCGCATGAAACTGCAG
GTTTTTCAACCAGCATTTGGTTTCGGTGCCTTTTGGGTGAACCGGCTCGC
CACGCATGCAGAATTGTCAACTCCCCTGTGCATGTTAAGATGTACATGTG
GAGGTCAGGATATGGAGATTCAGGGAGCACAGACACACGAACATAAAGCG
TAGGATATGGGGGAATATGTGATGATAGATCACTGTTCTTGCGATTCCCA
TCAGCTGCGAATAGATGATGAATCTTTAGGAGCTCCAGGGTCAAAACAGA
CTTCTCTACGGAGCTTGCCTCCGTCTTTAGCGCACGCGTTGTAGGAGTTC
TGCCTCGAGGTAGTCGGATGGGCGCCAGCCTGGCGAGCCGCCCAACAAAC
AGAAGCCTTCACGCCACCAATACCATGGTGCAACCCAATTCTTCACATTC
TCTTCCTGATCAGGTACTATGGCGACCTGCAGTGGTACGCCCCGGACGGC
GTAGACGGTGACAAGAAAGACACGCTCCTGATAATAGCCGTGAAGACCAA
CAACGCAAAGCTCGTTGAGTGGATGCTAACTCTCGATGGATTGGACACAG
CAAAGGAAAATGGCAAAGGCTTGAACGCCATGGCTGTTGCCAAGGCCATC
GGGAGGGAGAATCTACTCCTCGGAATGGCAGTTTGTGATGATGGACTATC
AGGTGGGGTAGATGCGAGCGAAAAGAGCGCAGCGAGTGCAGCGGATCCCA
ACGCCCCCCCTCTCCCCCCGGATAGGGCTGCTGCTGATGAGGCAGCAAGG
GAAGTTGCCCGACTTCGAACCGCCATGAAGATGCTGAAGGTGATGACGAG
ACGAGACTGTAAGCAAGAAGCATCTACTTCGCGTGCGGGCAACGCAGTTC
ACGTTGACGCTTCCAAGTTCAGACGACTTCGAAGCTGTCTTCCATGTTGT
CCGCAAACAACGGATGTTTTTTTTATTGGCGTTTTCTTTCTGTACAGAGC
TTATTTGTTTTGCAGATGTTCGCACATTGACAACTCGCTGAAGATTGAGC
CGGAGCAACGGTGACACCACGTTCTTAGATCAGACATGTCGCAAAGTTTC
CACCCCGAAAATATACTGTACACCGTGCAATGTACCACTTTAGGCCAACA
ACGACGAGAAGGAAGCCAAAATTACAAAGGCCCAGCAGGACTGCCAAGCG
TATCAAAAGATGCTCAAGGAGAAGGACGCAAACATCGGGGAGCTGCAAAA
ACAGGTGAAGGGGGTCCCTCCGACTTTACTCCGGATGAAACGATGGCACC
AGCAATCAGTGTGGTGTGCTATCCTGTTCCCGCTAAGATTGGCGGCGACA
GAGATGGGACTCTGAACGACAAACCACCCATGCGTCCGCACGCGTTTAGC
CAAGGCATCTTGGTGCAAAAGAGCAAACACGTTTTTGCACACGGGGCAAT
CGGACGGGTGTAAACCATCATGCCACAAGCAGAAGTGAACGATGGCGGCG
TAGAAATCCTTGTCTCTGTTGGTGGAGCTCAGGAATTACACTGCGCGACA
AAAACAGGTACTAGAACGAGAGAAGGAGGTGATCGTGATGCTGCACAAGA
TCGGGCGTTTGGAGGAGGCCTTGAGGGAATACACCGACTTCCGTCAGGCA
GATGCCGAACAGTACACCGATTGGGGTCGAGCAGATCACTACGATGCTGA
GAGCGGGGGTGCTGGAGCAGCGGCTTCGGCAGCGCCTGAAAACGGGTCGT
GA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1567:24571..27172-

>mRNA_E-siliculosus-1a_F_contig1567.3277.1 ID=mRNA_E-siliculosus-1a_F_contig1567.3277.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3277.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1650bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1567:24571..27172- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGGACCGCAAGATCTTCGATCTCTTTTATGGGGCAAGGGAGAACGA
CCATGATATGTGCCGCCGTGCGTACGAGACCGGCGCTGACATCAACTTTG
CCTTCGACGGGCGCCGAGCAACTAAGGGCGGGGCCGGACGATGATGACGG
ACCGCAAGATCTTCGATCTCTTTTATGGGGCAAGGGAGAACGACCATGAT
ATGTGCCGCCGTGCGTACGAGACCGGCGCTGACATCAACTTTGCCTTCGA
CGGGCGCCGAGCAACTAAGGGCGGGGCCGGACGATGGTACTATGGCGACC
TGCAGTGGTACGCCCCGGACGGCGTAGACGGTGACAAGAAAGACACGCTC
CTGATAATAGCCGTGAAGACCAACAACGCAAAGCTCGTTGAGTGGATGCT
AACTCTCGATGGATTGGACACAGCAAAGGAAAATGGCAAAGGCTTGAACG
CCATGGCTGTTGCCAAGGCCATCGGGAGGGAGAATCTACTCCTCGGAATG
GCAGTTTGTGATGATGGACTATCAGGTGGGGTAGATGCGAGCGAAAAGAG
CGCAGCGAGTGCAGCGGATCCCAACGCCCCCCCTCTCCCCCCGGATAGGG
CTGCTGCTGATGAGGCAGCAAGGGAAGTTGCCCGACTTCGAACCGCCATG
AAGATGCTGAAGGTACTATGGCGACCTGCAGTGGTACGCCCCGGACGGCG
TAGACGGTGACAAGAAAGACACGCTCCTGATAATAGCCGTGAAGACCAAC
AACGCAAAGCTCGTTGAGTGGATGCTAACTCTCGATGGATTGGACACAGC
AAAGGAAAATGGCAAAGGCTTGAACGCCATGGCTGTTGCCAAGGCCATCG
GGAGGGAGAATCTACTCCTCGGAATGGCAGTTTGTGATGATGGACTATCA
GGTGGGGTAGATGCGAGCGAAAAGAGCGCAGCGAGTGCAGCGGATCCCAA
CGCCCCCCCTCTCCCCCCGGATAGGGCTGCTGCTGATGAGGCAGCAAGGG
AAGTTGCCCGACTTCGAACCGCCATGAAGATGCTGAAGGCCAACAACGAC
GAGAAGGAAGCCAAAATTACAAAGGCCCAGCAGGACTGCCAAGCGTATCA
AAAGATGCTCAAGGAGAAGGACGCAAACATCGGGGAGCTGCAAAAACAGG
CCAACAACGACGAGAAGGAAGCCAAAATTACAAAGGCCCAGCAGGACTGC
CAAGCGTATCAAAAGATGCTCAAGGAGAAGGACGCAAACATCGGGGAGCT
GCAAAAACAGGTACTAGAACGAGAGAAGGAGGTGATCGTGATGCTGCACA
AGATCGGGCGTTTGGAGGAGGCCTTGAGGGAATACACCGACTTCCGTCAG
GCAGATGCCGAACAGTACACCGATTGGGGTCGAGCAGATCACTACGATGC
TGAGAGCGGGGGTGCTGGAGCAGCGGCTTCGGCAGCGCCTGAAAACGGGT
CGTGAGTACTAGAACGAGAGAAGGAGGTGATCGTGATGCTGCACAAGATC
GGGCGTTTGGAGGAGGCCTTGAGGGAATACACCGACTTCCGTCAGGCAGA
TGCCGAACAGTACACCGATTGGGGTCGAGCAGATCACTACGATGCTGAGA
GCGGGGGTGCTGGAGCAGCGGCTTCGGCAGCGCCTGAAAACGGGTCGTGA
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