mRNA_E-siliculosus-1a_F_contig1567.3275.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: D7G8J5_ECTSI (HIT-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J5_ECTSI) HSP 1 Score: 374 bits (960), Expect = 1.320e-127 Identity = 190/191 (99.48%), Postives = 191/191 (100.00%), Query Frame = 1
Query: 76 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 648
MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNK+KNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS
Sbjct: 1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKNKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 191
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: W7TJ72_9STRA (Zinc finger, HIT-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ72_9STRA) HSP 1 Score: 145 bits (365), Expect = 4.310e-38 Identity = 96/194 (49.48%), Postives = 117/194 (60.31%), Query Frame = 1
Query: 76 MSQSKRKAWDATVQASGHVPTRTK---TKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 648
MS +KR AWD + +G +TK KR+SGR VLSK+M+VVDEETR +V+DARLEALEADNY E+ G E D+ + D E RP+ + A + + + + K L Q +YE E S P TA A S P R FCSVCGY GLYTCTRCG R+CSSKC E HKETRCLKFA+
Sbjct: 1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYV---DSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAA---AQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A485KXM9_9STRA (Aste57867_13128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.100e-34 Identity = 88/191 (46.07%), Postives = 121/191 (63.35%), Query Frame = 1
Query: 79 SQSKRKAWDATVQASGHV-PTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPV--SKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
+++ ++ WD T+ +SG V P T KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E G++D F LD+D+ + + + +++ KA +G RK KSL Q ++E +++ P +T + A V S HPPR FC VCG YTC RCGSRFCS +C +QHKET CLKF
Sbjct: 3 AKNAKRQWDQTMASSGLVAPGHTPKKRFSGRTVKISKAMKHVDEETRQQVRNARLDALEADNYVEATEGDED-MFILDDDEPKKPKSKAKAKQPKAAPLVPTARGRHRIV--RKVKSLRQWIFEECGDVTNDPLSSTPTYLSAAVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKF 190
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A7S1U8Q5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Q5_9STRA) HSP 1 Score: 129 bits (323), Expect = 7.420e-32 Identity = 81/196 (41.33%), Postives = 115/196 (58.67%), Query Frame = 1
Query: 91 RKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGN-------KSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPV---SKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 648
RK W+ T++A G ++R+S R +S+ +RVVD ETR V++ARL+ALEADNY E+H QDD + + +E P+ + K+K+ G K WK+RK+K L QV+YE + + GA +V+ + S+ PPRAFCSVCGY G + C RCG R+C +C E HKETRC+KF +
Sbjct: 9 RKGWNETMKAMGAKAPGGNSRRSSSRIATVSRDLRVVDAETREHVRNARLDALEADNYMEEHVA-QDDAYEEVDSEEEAAEPKAKXXXXXXXXXXXXXTTAKAKDPGHK--WKKRKYKPLRQVVYEQGYDAT----GAASVNHSSAAMGPSRFPPRAFCSVCGYFGTFKCPRCGMRYCRRRCQEAHKETRCMKFGT 197
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: W4G490_9STRA (HIT-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G490_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.550e-30 Identity = 87/199 (43.72%), Postives = 112/199 (56.28%), Query Frame = 1
Query: 79 SQSKRKAWDATVQASG-HVPTRTKT--KRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKE--------RKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
+++ ++ WD T+ +SG VP K KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E G +D F LD+DD+ A K KSK K K + RK KSL Q+++E + V+ +K PPR FC VCG YTC RCGS+FC +C QHKET CLKF
Sbjct: 3 AKNAKRQWDQTMASSGLAVPGSAKVSRKRFSGRTVKISKAMKHVDEETRRQVRNARLDALEADNYMESTDGADEDMFVLDDDDD----------AKKPTKPKSKAKANKHQVPQALGRHRMVRKVKSLRQLIFEECGD-GMSSTDINYVTAAVKPAKTPPRHFCCVCGLLSSYTCGRCGSKFCCVRCGNQHKETGCLKF 190
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A024TKA6_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKA6_9STRA) HSP 1 Score: 124 bits (310), Expect = 5.680e-30 Identity = 86/205 (41.95%), Postives = 122/205 (59.51%), Query Frame = 1
Query: 79 SQSKRKAWDATVQASG-------HVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKD-PWKE------RKFKSLHQVLYELTNELSAYPGGATAVS-IEAPVS--KHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
+++ ++ WD T+ +SG HVP KR SGRT+ +SK+M+ VDEETR QV++ARL+ALEADNY E+ +D F LDEDD+ ++ P +K+K KG P + RK KSL +++E +++ PG + ++ + A V K PPR FC VCG +Y+C RCGS+FC +C QHKET CLKF
Sbjct: 3 TKNAKRQWDQTMASSGVVAPGSGHVPR----KRFSGRTMKISKTMKHVDEETRRQVRNARLDALEADNYMENTDDGDEDMFVLDEDDD------AVAKKASKPKSKAKAKGTLHVPQAQGRHRVVRKIKSLRHLIFEECGDVA--PGNDSVINYVTAAVKPPKTPPRHFCCVCGLLSVYSCGRCGSKFCCVRCGNQHKETGCLKF 195
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: K3X0J0_GLOUD (HIT-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0J0_GLOUD) HSP 1 Score: 120 bits (302), Expect = 8.810e-29 Identity = 85/199 (42.71%), Postives = 114/199 (57.29%), Query Frame = 1
Query: 73 GMSQSKRKAWDATV----QASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDE---DDERGDRPRGRSRAGKAP-GNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAY-PGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
G + +K W+ T+ A+ KTKR SGRTV LSK+M+ VDEETR V++ARL+ALEADNY D + DD +D+ DD GD P G GK K++ K K+ K KSL Q+++E A P +++ A S P R FC VCG+ +Y+CTRCGSR+C KC ++HKE+ CLKF
Sbjct: 2 GKAYDGKKRWNETILRTTAAAATAKRAAKTKRFSGRTVKLSKAMQHVDEETRTIVRNARLDALEADNYGVDAEADGDDANDVDDMYIDD--GDVPSGAGTPGKDKRARKNRKLATKAKAKKWKVKSLAQLVFEEHGAGDAVDPNMPNYITVAAAASTRPARRFCCVCGFFAVYSCTRCGSRYCRIKCGDEHKESSCLKF 198
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A067BTG0_SAPPC (HIT-type domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BTG0_SAPPC) HSP 1 Score: 117 bits (292), Expect = 2.180e-27 Identity = 88/199 (44.22%), Postives = 113/199 (56.78%), Query Frame = 1
Query: 79 SQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRA---GKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPG-GATAVSIEAPVSKHPPRAFCSVCGY------HGLYTCTRCGSRFCSSKCYEQHKETRCLKFA 645
S++ ++ WD T+ +SG KR SGR V +SK+M+ VDEETR QV++ARL+ALEADNY E + DDE EDD G + +SRA KAP + G + RK KSL Q+++E E G G V+ + PPR FC VCGY Y C RCGSRFCS KC +QH+ET CLKF+
Sbjct: 3 SKNAKRQWDQTMASSGLALPTAPRKRNSGRAVKISKAMKHVDEETRKQVRNARLDALEADNYVE-PTEDGDDEDLYIEDDAVGPKKSSKSRAKGKAKAPVVPISSSGRRRVV--RKVKSLAQLVFE---ECGTGEGLGPNYVTAAVKPATTPPRKFCVVCGYPFDRTLFSNYACGRCGSRFCSVKCGDQHRETGCLKFS 195
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A6G0X8S1_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S1_9STRA) HSP 1 Score: 113 bits (282), Expect = 5.070e-26 Identity = 75/189 (39.68%), Postives = 110/189 (58.20%), Query Frame = 1
Query: 79 SQSKRKAWDATVQASGHV-PTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
+++ ++ WD T+++SG V P + KR SGRTV +SK+M++VDEETR QV++ARL+ALEADNY E + +D F L++ + RK KSL Q+++E + + + +++ P K PPR FC+VCG+ Y C RCGS+FCS +C +QHKET CLKF
Sbjct: 3 AKNAKRQWDQTMKSSGLVAPGQAPKKRFSGRTVKISKAMKLVDEETRQQVRNARLDALEADNYVE-QTEDDEDMFVLEDXXXXXXXXXXXXXXXXXXATPVVPQALGRRRIVRKVKSLRQLIFEECGDGESSIPNYISAAVKPP--KEPPRHFCAVCGHFSCYNCGRCGSKFCSVQCGDQHKETGCLKF 188
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A1V9YMM7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMM7_9STRA) HSP 1 Score: 114 bits (284), Expect = 5.120e-26 Identity = 89/221 (40.27%), Postives = 118/221 (53.39%), Query Frame = 1
Query: 79 SQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWK-------ERKFKSLHQVLYEL--TNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGY------HGL------------------YTCTRCGSRFCSSKCYEQHKETRCLKF 642
S++ ++ WD T+ +SG + KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E +D++ +++D + +SRA K+K+KG P RK KSL +++E T E + P TA A K PPR FC VCGY H YTC RCGSRFCS +C +QHKET CLKF
Sbjct: 3 SKNAKRQWDQTMASSGLALPQAPRKRYSGRTVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTDDGEDEDLYIEDDSGTPSKKPLKSRA------KAKSKGTVVPVSISGRRRIVRKVKSLAHLIFEECGTGEDTQRPNYITAAVKPA---KTPPRHFCVVCGYPFRYSLHAACTSKTVLRSLTRRTLFSDYTCGRCGSRFCSVRCGDQHKETGCLKF 214 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1567.3275.1 >prot_E-siliculosus-1a_F_contig1567.3275.1 ID=prot_E-siliculosus-1a_F_contig1567.3275.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=192bp MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVback to top mRNA from alignment at E-siliculosus-1a_F_contig1567:14846..18519+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1567.3275.1 ID=mRNA_E-siliculosus-1a_F_contig1567.3275.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3674bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1567:14846..18519+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1567:14846..18519+ >mRNA_E-siliculosus-1a_F_contig1567.3275.1 ID=mRNA_E-siliculosus-1a_F_contig1567.3275.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1567:14846..18519+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |