mRNA_E-siliculosus-1a_F_contig1567.3275.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1567.3275.1
Unique NamemRNA_E-siliculosus-1a_F_contig1567.3275.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: D7G8J5_ECTSI (HIT-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J5_ECTSI)

HSP 1 Score: 374 bits (960), Expect = 1.320e-127
Identity = 190/191 (99.48%), Postives = 191/191 (100.00%), Query Frame = 1
Query:   76 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 648
            MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNK+KNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS
Sbjct:    1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKNKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 191          
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: W7TJ72_9STRA (Zinc finger, HIT-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ72_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.310e-38
Identity = 96/194 (49.48%), Postives = 117/194 (60.31%), Query Frame = 1
Query:   76 MSQSKRKAWDATVQASGHVPTRTK---TKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 648
            MS +KR AWD  +  +G    +TK    KR+SGR  VLSK+M+VVDEETR +V+DARLEALEADNY E+ G E D+ +    D E   RP+ +  A +      + +         + K L Q +YE   E S  P   TA    A  S  P R FCSVCGY GLYTCTRCG R+CSSKC E HKETRCLKFA+
Sbjct:    1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYV---DSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAA---AQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188          
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A485KXM9_9STRA (Aste57867_13128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.100e-34
Identity = 88/191 (46.07%), Postives = 121/191 (63.35%), Query Frame = 1
Query:   79 SQSKRKAWDATVQASGHV-PTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPV--SKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
            +++ ++ WD T+ +SG V P  T  KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E   G++D  F LD+D+ +  + + +++  KA       +G       RK KSL Q ++E   +++  P  +T   + A V  S HPPR FC VCG    YTC RCGSRFCS +C +QHKET CLKF
Sbjct:    3 AKNAKRQWDQTMASSGLVAPGHTPKKRFSGRTVKISKAMKHVDEETRQQVRNARLDALEADNYVEATEGDED-MFILDDDEPKKPKSKAKAKQPKAAPLVPTARGRHRIV--RKVKSLRQWIFEECGDVTNDPLSSTPTYLSAAVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKF 190          
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A7S1U8Q5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Q5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 7.420e-32
Identity = 81/196 (41.33%), Postives = 115/196 (58.67%), Query Frame = 1
Query:   91 RKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGN-------KSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPV---SKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 648
            RK W+ T++A G       ++R+S R   +S+ +RVVD ETR  V++ARL+ALEADNY E+H   QDD +   + +E    P+ +                K+K+ G K  WK+RK+K L QV+YE   + +    GA +V+  +     S+ PPRAFCSVCGY G + C RCG R+C  +C E HKETRC+KF +
Sbjct:    9 RKGWNETMKAMGAKAPGGNSRRSSSRIATVSRDLRVVDAETREHVRNARLDALEADNYMEEHVA-QDDAYEEVDSEEEAAEPKAKXXXXXXXXXXXXXTTAKAKDPGHK--WKKRKYKPLRQVVYEQGYDAT----GAASVNHSSAAMGPSRFPPRAFCSVCGYFGTFKCPRCGMRYCRRRCQEAHKETRCMKFGT 197          
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: W4G490_9STRA (HIT-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G490_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.550e-30
Identity = 87/199 (43.72%), Postives = 112/199 (56.28%), Query Frame = 1
Query:   79 SQSKRKAWDATVQASG-HVPTRTKT--KRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKE--------RKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
            +++ ++ WD T+ +SG  VP   K   KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E   G  +D F LD+DD+          A K    KSK K  K    +        RK KSL Q+++E   +          V+     +K PPR FC VCG    YTC RCGS+FC  +C  QHKET CLKF
Sbjct:    3 AKNAKRQWDQTMASSGLAVPGSAKVSRKRFSGRTVKISKAMKHVDEETRRQVRNARLDALEADNYMESTDGADEDMFVLDDDDD----------AKKPTKPKSKAKANKHQVPQALGRHRMVRKVKSLRQLIFEECGD-GMSSTDINYVTAAVKPAKTPPRHFCCVCGLLSSYTCGRCGSKFCCVRCGNQHKETGCLKF 190          
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A024TKA6_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKA6_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.680e-30
Identity = 86/205 (41.95%), Postives = 122/205 (59.51%), Query Frame = 1
Query:   79 SQSKRKAWDATVQASG-------HVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKD-PWKE------RKFKSLHQVLYELTNELSAYPGGATAVS-IEAPVS--KHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
            +++ ++ WD T+ +SG       HVP     KR SGRT+ +SK+M+ VDEETR QV++ARL+ALEADNY E+     +D F LDEDD+        ++    P +K+K KG    P  +      RK KSL  +++E   +++  PG  + ++ + A V   K PPR FC VCG   +Y+C RCGS+FC  +C  QHKET CLKF
Sbjct:    3 TKNAKRQWDQTMASSGVVAPGSGHVPR----KRFSGRTMKISKTMKHVDEETRRQVRNARLDALEADNYMENTDDGDEDMFVLDEDDD------AVAKKASKPKSKAKAKGTLHVPQAQGRHRVVRKIKSLRHLIFEECGDVA--PGNDSVINYVTAAVKPPKTPPRHFCCVCGLLSVYSCGRCGSKFCCVRCGNQHKETGCLKF 195          
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: K3X0J0_GLOUD (HIT-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0J0_GLOUD)

HSP 1 Score: 120 bits (302), Expect = 8.810e-29
Identity = 85/199 (42.71%), Postives = 114/199 (57.29%), Query Frame = 1
Query:   73 GMSQSKRKAWDATV----QASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDE---DDERGDRPRGRSRAGKAP-GNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAY-PGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
            G +   +K W+ T+     A+       KTKR SGRTV LSK+M+ VDEETR  V++ARL+ALEADNY  D   + DD   +D+   DD  GD P G    GK     K++    K   K+ K KSL Q+++E      A  P     +++ A  S  P R FC VCG+  +Y+CTRCGSR+C  KC ++HKE+ CLKF
Sbjct:    2 GKAYDGKKRWNETILRTTAAAATAKRAAKTKRFSGRTVKLSKAMQHVDEETRTIVRNARLDALEADNYGVDAEADGDDANDVDDMYIDD--GDVPSGAGTPGKDKRARKNRKLATKAKAKKWKVKSLAQLVFEEHGAGDAVDPNMPNYITVAAAASTRPARRFCCVCGFFAVYSCTRCGSRYCRIKCGDEHKESSCLKF 198          
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A067BTG0_SAPPC (HIT-type domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BTG0_SAPPC)

HSP 1 Score: 117 bits (292), Expect = 2.180e-27
Identity = 88/199 (44.22%), Postives = 113/199 (56.78%), Query Frame = 1
Query:   79 SQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRA---GKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPG-GATAVSIEAPVSKHPPRAFCSVCGY------HGLYTCTRCGSRFCSSKCYEQHKETRCLKFA 645
            S++ ++ WD T+ +SG        KR SGR V +SK+M+ VDEETR QV++ARL+ALEADNY E    + DDE    EDD  G +   +SRA    KAP     + G +     RK KSL Q+++E   E     G G   V+     +  PPR FC VCGY         Y C RCGSRFCS KC +QH+ET CLKF+
Sbjct:    3 SKNAKRQWDQTMASSGLALPTAPRKRNSGRAVKISKAMKHVDEETRKQVRNARLDALEADNYVE-PTEDGDDEDLYIEDDAVGPKKSSKSRAKGKAKAPVVPISSSGRRRVV--RKVKSLAQLVFE---ECGTGEGLGPNYVTAAVKPATTPPRKFCVVCGYPFDRTLFSNYACGRCGSRFCSVKCGDQHRETGCLKFS 195          
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A6G0X8S1_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.070e-26
Identity = 75/189 (39.68%), Postives = 110/189 (58.20%), Query Frame = 1
Query:   79 SQSKRKAWDATVQASGHV-PTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 642
            +++ ++ WD T+++SG V P +   KR SGRTV +SK+M++VDEETR QV++ARL+ALEADNY E    + +D F L++                        +        RK KSL Q+++E   +  +      + +++ P  K PPR FC+VCG+   Y C RCGS+FCS +C +QHKET CLKF
Sbjct:    3 AKNAKRQWDQTMKSSGLVAPGQAPKKRFSGRTVKISKAMKLVDEETRQQVRNARLDALEADNYVE-QTEDDEDMFVLEDXXXXXXXXXXXXXXXXXXATPVVPQALGRRRIVRKVKSLRQLIFEECGDGESSIPNYISAAVKPP--KEPPRHFCAVCGHFSCYNCGRCGSKFCSVQCGDQHKETGCLKF 188          
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Match: A0A1V9YMM7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMM7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.120e-26
Identity = 89/221 (40.27%), Postives = 118/221 (53.39%), Query Frame = 1
Query:   79 SQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWK-------ERKFKSLHQVLYEL--TNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGY------HGL------------------YTCTRCGSRFCSSKCYEQHKETRCLKF 642
            S++ ++ WD T+ +SG    +   KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E     +D++  +++D     +   +SRA      K+K+KG   P          RK KSL  +++E   T E +  P   TA    A   K PPR FC VCGY      H                    YTC RCGSRFCS +C +QHKET CLKF
Sbjct:    3 SKNAKRQWDQTMASSGLALPQAPRKRYSGRTVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTDDGEDEDLYIEDDSGTPSKKPLKSRA------KAKSKGTVVPVSISGRRRIVRKVKSLAHLIFEECGTGEDTQRPNYITAAVKPA---KTPPRHFCVVCGYPFRYSLHAACTSKTVLRSLTRRTLFSDYTCGRCGSRFCSVRCGDQHKETGCLKF 214          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1567.3275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J5_ECTSI1.320e-12799.48HIT-type domain-containing protein n=2 Tax=Ectocar... [more]
W7TJ72_9STRA4.310e-3849.48Zinc finger, HIT-type n=1 Tax=Nannochloropsis gadi... [more]
A0A485KXM9_9STRA1.100e-3446.07Aste57867_13128 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1U8Q5_9STRA7.420e-3241.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W4G490_9STRA3.550e-3043.72HIT-type domain-containing protein n=7 Tax=Aphanom... [more]
A0A024TKA6_9STRA5.680e-3041.95HIT-type domain-containing protein n=1 Tax=Aphanom... [more]
K3X0J0_GLOUD8.810e-2942.71HIT-type domain-containing protein n=1 Tax=Globisp... [more]
A0A067BTG0_SAPPC2.180e-2744.22HIT-type domain-containing protein n=3 Tax=Saprole... [more]
A0A6G0X8S1_9STRA5.070e-2639.68HIT-type domain-containing protein n=1 Tax=Aphanom... [more]
A0A1V9YMM7_9STRA5.120e-2640.27Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1567contigE-siliculosus-1a_F_contig1567:14846..18519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size576
Model size1193
Exons6
Ec32 orthologEc-14_003240.1
Ec32 ortholog descriptionZinc finger, HIT-type
Hectar predicted targeting categoryother localisation
Seed ortholog evalue2.2e-102
Seed ortholog score378.3
Taxonomic scopeEukaryota
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsKOG3362@1,KOG3362@2759
EggNOG free text desc.regulation of histone deacetylation
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0002682,GO:0002694,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0019899,GO:0031056,GO:0031063,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031491,GO:0031974,GO:0031981,GO:0032268,GO:0032944,GO:0032991,GO:0033043,GO:0033044,GO:0034728,GO:0040008,GO:0042127,GO:0042129,GO:0042742,GO:0042802,GO:0042826,GO:0043044,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048580,GO:0048638,GO:0048831,GO:0050670,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051249,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070603,GO:0070663,GO:0071824,GO:0071840,GO:0080090,GO:0090311,GO:0097346,GO:0098542,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2001141
KEGG ModuleM00354
KEGG Pathwayko03040,map03040
KEGG koko:K11663,ko:K12846
Preferred nameZNHIT1
Seed eggNOG ortholog2880.D7G8J5
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1567.3275.1prot_E-siliculosus-1a_F_contig1567.3275.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1567 14921..17977 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928078.5797527-UTR-E-siliculosus-1a_F_contig1567:14845..149201622928078.5797527-UTR-E-siliculosus-1a_F_contig1567:14845..14920Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1567 14846..14920 +
1696318797.749123-UTR-E-siliculosus-1a_F_contig1567:14845..149201696318797.749123-UTR-E-siliculosus-1a_F_contig1567:14845..14920Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1567 14846..14920 +
1622928078.6899345-UTR-E-siliculosus-1a_F_contig1567:17977..185191622928078.6899345-UTR-E-siliculosus-1a_F_contig1567:17977..18519Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1567 17978..18519 +
1696318797.806832-UTR-E-siliculosus-1a_F_contig1567:17977..185191696318797.806832-UTR-E-siliculosus-1a_F_contig1567:17977..18519Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1567 17978..18519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928078.5912993-CDS-E-siliculosus-1a_F_contig1567:14920..150081622928078.5912993-CDS-E-siliculosus-1a_F_contig1567:14920..15008Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 14921..15008 +
1696318797.7588832-CDS-E-siliculosus-1a_F_contig1567:14920..150081696318797.7588832-CDS-E-siliculosus-1a_F_contig1567:14920..15008Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 14921..15008 +
1622928078.6033814-CDS-E-siliculosus-1a_F_contig1567:15262..153211622928078.6033814-CDS-E-siliculosus-1a_F_contig1567:15262..15321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 15263..15321 +
1696318797.7665446-CDS-E-siliculosus-1a_F_contig1567:15262..153211696318797.7665446-CDS-E-siliculosus-1a_F_contig1567:15262..15321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 15263..15321 +
1622928078.6225867-CDS-E-siliculosus-1a_F_contig1567:15814..158681622928078.6225867-CDS-E-siliculosus-1a_F_contig1567:15814..15868Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 15815..15868 +
1696318797.7740126-CDS-E-siliculosus-1a_F_contig1567:15814..158681696318797.7740126-CDS-E-siliculosus-1a_F_contig1567:15814..15868Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 15815..15868 +
1622928078.6376452-CDS-E-siliculosus-1a_F_contig1567:16722..168501622928078.6376452-CDS-E-siliculosus-1a_F_contig1567:16722..16850Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 16723..16850 +
1696318797.7814126-CDS-E-siliculosus-1a_F_contig1567:16722..168501696318797.7814126-CDS-E-siliculosus-1a_F_contig1567:16722..16850Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 16723..16850 +
1622928078.6532345-CDS-E-siliculosus-1a_F_contig1567:17379..174251622928078.6532345-CDS-E-siliculosus-1a_F_contig1567:17379..17425Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 17380..17425 +
1696318797.7890832-CDS-E-siliculosus-1a_F_contig1567:17379..174251696318797.7890832-CDS-E-siliculosus-1a_F_contig1567:17379..17425Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 17380..17425 +
1622928078.674801-CDS-E-siliculosus-1a_F_contig1567:17776..179771622928078.674801-CDS-E-siliculosus-1a_F_contig1567:17776..17977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 17777..17977 +
1696318797.799467-CDS-E-siliculosus-1a_F_contig1567:17776..179771696318797.799467-CDS-E-siliculosus-1a_F_contig1567:17776..17977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1567 17777..17977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1567.3275.1

>prot_E-siliculosus-1a_F_contig1567.3275.1 ID=prot_E-siliculosus-1a_F_contig1567.3275.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=192bp
MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQV
KDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNK
SKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPP
RAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS*
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mRNA from alignment at E-siliculosus-1a_F_contig1567:14846..18519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1567.3275.1 ID=mRNA_E-siliculosus-1a_F_contig1567.3275.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3674bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1567:14846..18519+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGGCAGCAGTTGTGTGGGTGGTTGTTCGTTTTGGCGCGCCACACAGCA AGGGGGGGGGCAAGCGAGACAAGGCATGTCTCAAAGCAAGAGGAAGGCAT GGGATGCCACGGTGCAAGCCAGCGGGCATGTCCCAACACGTACAAAAACG AAACGGGCTTCAGGTGAGAGTCTTCACACAAACACAACTAACTTCGACAG AGAGCCAGCGGGGATGTGTGTAGTCATGACCTCAAACCGATCAACCGGGA GTTGGAGGCTGTGTAAAGGCAGCGAAGTATCCCAGCGAAAGCACTACTGA CGAGTACTCAAGGTCTTGTAGTGCATGTCATTTTTGCCCAAACTGTTGTG TGTCGATGATAAAAGACAGCCACCGACCCCCTCTATGCCCCCGCCACCTC CTTGATGCCCTATTTAGGACGTACGGTGGTGCTCAGTAAGTCGATGCGCG TTGTGGATGAAGAAACGAGAAATCAGGTTTGTGCGTGGTGGATGTGACCG TAGAACAGAGACACGGAGACCGCGATTGCGGATGAGAAGGGGTTCCGGGA GGTGGTATTCTACAGCAGCAGCAGTACAGCAGTAGGCTACGACTTACGGT GAAACCACGAGACCACGGGGCAAGTATAGCACTTGTGAGATAGAGGCCAC AGGGTATGCCACGTATTCTCTGCATTACAGATATACGTTTGAGGGTGTCC CAAGTTGTCAAAATCGAACAGTTTCATATCGCGTGCTGTTGTGGTGACAC GTGGTGTAGCAGAATTGAAATCACGACAACCACTATTTGCCATGTTCTCA ACACCGCAGATGTGGTGCCGCCCTCGTGAGATAACCTTATAGGCACGTTT GATCACGCAATTGTCCTCCGCTGCTGCTGGGATGCTTGTCTTTTTTCAGC CTTTTCTCATTCCGACCAGGACTGCTGCTGCGGTGCTACTCTCTTAACTC TCCCGCCGCAACGTGACAGGTCAAGGACGCTCGTCTGGAAGCGTTGGAAG CGGATAACTACACCGAAGACCACGTAAGAATCGTTGAGGACGCTGCCCCT TTGTCCTGTGAAGTTGGTTCCGTTCCGTCCGTGCGTTGACGTTGTTGAAT ATCCTTGCACACGCGTGCGCTCGAGAACGGACACGTTTCCCTAGAGAAGC GTAGTTTGTCAGCCTTGTTTCGACCAGGCCGCACGTGCATGCCTTTTTCG TGTGCTGTTTTTCTCCCTCCACATGTTGTTGTTGTTTTCACATTAAAAAC CGTTCCGATCTCTCTCTACCCAGTACCTTCATATGTCCGTACTGATCCAA CACTTGACGCGGTTGATTCCCGTGGTCACAGGCTAGCTTACCTTAAAAAG GTACACTCAAATATACGACCCCGAGAGGTCCGCAAGTCAATAGAAATCAA CGATAGATATTCTGGTGTCCTCCGCTCCCTCTGCGCGCTATGCGAGGTAA CATCTGAGATTAGGAGTCAGCATCACGGGCTAGAGAGAAAGAGGTACACC CCCTTGGTTCAATCTTGGTGCTTCACACGCAAGCAGAGACAAGGCCATCT GATACAGAAAAAGAGAGAAAAAAGATGACCTCCGGACGAAGGGTGGTAAC GCTCTGGCGTACCCTGCGGGAAATAGCAACATCTCTAGAGTCAAAGCAAA AACGTATTTAGAGTAACGGCAGGGCACCTACAGTAGTACAAGGTAGGTGT CCTTCAACTTACACCCCCCTTCTTCCCTCCACATCCTGAACAGGTTTCTG AGTAAGGAAAACGTCGCGATCGCGAACCCCGTAGCCAGAACGGCCCAAAA CAGCCTGCATCGATTGTTGTCGCTAGTATAGTATATGTCCACCCACCGTG ACATGCGCTGTTTGTGTTGCTCTCTAGGGAGGAGAGCAGGATGACGAGTT TGCCTTGGATGAGGACGACGAGCGAGGGGACCGGCCGCGGGGCAGGAGCA GGGCGGGCAAGGCCCCGGGCAACAAGAGCAAGAACAAGGGAGAGAAGGAC CCTTGGTGAGGGCACGGCAGCGTGTTGGTTGTGGCTCACGCGCCTGCTTC TGTCGCGTGGGTGGTTGGTCGTTAAAACGAAGGGTGGGAGTGGGGACGAT GTAGTCGTGTGGGAGGAAGCTTTCTATGTAGTGGTGCATGCGCCGTTTAG CCCGAAGCTGGGAGATGCTGCTGTAGTTCATGTGGACGGGTCGTGACTTC TACACGAAATTCTGCACGAACTGCGTCGCACACGTTGTTCGGAAACTGCA ACGGGCTACAGCAGTGGTAAGGGCGGCCGGGTGTGTGTGTGTGTGGCCAC TCCAACATTTCACGGCGTTGCCCGTCACGACGTTAGGCGTCGTCCCCCAA ACACAATGTGAAAAGACACACAGCAGTAGACTCACCATGTTATTGTTGTA CACCAGTGCCTGGCGTATGCTCGCCCGCTCTACATTCAAGCTGCTGTTCG CTCTAACAAGACGCACATGCCCGCCATACCCCTCCTTTTGCCTCTTGCTG GCGACATTTTCACTTGCGACCGCGATGAATCAAGGAAAGAGCGCAAGTTC AAGAGCCTGCACCAGGTCCTCTACGAATTGGTAAGATAATCCTCGCACGC TGTTCTCGCAAGAGCCACCACCACGTGCCCCTCTTGTTGCCGTTGCACGT AGAGAATGCGATTGGTGCTGCAGAGTTAGTCCCCCCACATTGCGCTTGTT TTCACACGGAGTCGAGGCATGGTGATGTACGTAGCATGTGATTTTTTTTT CCCTGGCAAGAGGAAGTCCCACCGGCAGAGAAACGTTGTTGCGAATATCC GTTCTGCTGAAAACGGGGGTGGCTGGGGATATTCGCTGCAAATAGAACCC GCACGCTGTCCTCTCTCCTCCCCTCACTTCCTTGCATGCTGATACCGATT GTTTTTGTGCTTTCCCATCCTCTCGGCACAGACGAACGAACTCTCGGCGT ACCCGGGCGGGGCGACGGCTGTGAGCATCGAGGCGCCGGTGTCGAAGCAC CCGCCGCGGGCGTTCTGTTCCGTGTGCGGGTACCACGGGCTGTACACGTG CACGCGGTGCGGGTCTCGGTTCTGCAGTTCCAAGTGCTACGAGCAGCACA AGGAGACGCGTTGTCTCAAGTTCGCATCGTAGATTGTATTCGTTACAACA GAGTTGTAAAGCAGCGGTAGGAATGCCGCGTACGCACGCGATCGGGAAAA AAAAACAATTGCCGGTTTTACAGCAGTTGCAAACCTGCCTTGTTCCGTCG GTGCGGCTGGGCGGCATTCAGGTTCCTGTTTTGAGTGTCGCATTCTGTGT ATTAAGAAGGGTAAATACCTTCTTCGAGGGGAAGCGCCGTCGGTTTTTTC CCAGGGGAGCGTCGGTTTTCCCAACGGCCAATGCACGACAAATTGAACAA AGATTTGTGTAGGAGAAATGTGTACCTGTATTTGTGCGACGTGCCGCGTG ATGGTTATTCAGAAGGAATGGGTCCGACTGAGTTTCTGCACGGCGGTGGA GACGAGTCTTTTTCGATGACCTGAAACGTGGAAGATGTTTTGGGAGCGGA CCGAGTGTACGATCGCAGCGTGTCACAAGGACGGGGTGTGCTGCAGGGTT GCTCTCTCCGTCGAAGGAAGGGGGCTCGTCAAAGCCACAGTTATTTCCTT GACTGATGATTCTTTGGAAGGTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1567:14846..18519+

>mRNA_E-siliculosus-1a_F_contig1567.3275.1 ID=mRNA_E-siliculosus-1a_F_contig1567.3275.1|Name=mRNA_E-siliculosus-1a_F_contig1567.3275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1567:14846..18519+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTCAAAGCAAGAGGAAGGCATGGGATGCCACGGTGCAAGCCAGCGG
GCATGTCCCAACACGTACAAAAACGAAACGGGCTTCAGATGTCTCAAAGC
AAGAGGAAGGCATGGGATGCCACGGTGCAAGCCAGCGGGCATGTCCCAAC
ACGTACAAAAACGAAACGGGCTTCAGGACGTACGGTGGTGCTCAGTAAGT
CGATGCGCGTTGTGGATGAAGAAACGAGAAATCAGGACGTACGGTGGTGC
TCAGTAAGTCGATGCGCGTTGTGGATGAAGAAACGAGAAATCAGGTCAAG
GACGCTCGTCTGGAAGCGTTGGAAGCGGATAACTACACCGAAGACCACGT
CAAGGACGCTCGTCTGGAAGCGTTGGAAGCGGATAACTACACCGAAGACC
ACGGAGGAGAGCAGGATGACGAGTTTGCCTTGGATGAGGACGACGAGCGA
GGGGACCGGCCGCGGGGCAGGAGCAGGGCGGGCAAGGCCCCGGGCAACAA
GAGCAAGAACAAGGGAGAGAAGGACCCTTGGGAGGAGAGCAGGATGACGA
GTTTGCCTTGGATGAGGACGACGAGCGAGGGGACCGGCCGCGGGGCAGGA
GCAGGGCGGGCAAGGCCCCGGGCAACAAGAGCAAGAACAAGGGAGAGAAG
GACCCTTGGAAAGAGCGCAAGTTCAAGAGCCTGCACCAGGTCCTCTACGA
ATTGGAAAGAGCGCAAGTTCAAGAGCCTGCACCAGGTCCTCTACGAATTG
ACGAACGAACTCTCGGCGTACCCGGGCGGGGCGACGGCTGTGAGCATCGA
GGCGCCGGTGTCGAAGCACCCGCCGCGGGCGTTCTGTTCCGTGTGCGGGT
ACCACGGGCTGTACACGTGCACGCGGTGCGGGTCTCGGTTCTGCAGTTCC
AAGTGCTACGAGCAGCACAAGGAGACGCGTTGTCTCAAGTTCGCATCGTA
GACGAACGAACTCTCGGCGTACCCGGGCGGGGCGACGGCTGTGAGCATCG
AGGCGCCGGTGTCGAAGCACCCGCCGCGGGCGTTCTGTTCCGTGTGCGGG
TACCACGGGCTGTACACGTGCACGCGGTGCGGGTCTCGGTTCTGCAGTTC
CAAGTGCTACGAGCAGCACAAGGAGACGCGTTGTCTCAAGTTCGCATCGT
AG
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