mRNA_E-siliculosus-1a_F_contig1565.3266.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1565.3266.1
Unique NamemRNA_E-siliculosus-1a_F_contig1565.3266.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: D8LAT3_ECTSI (Bile Acid:Na+ symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT3_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 2.300e-142
Identity = 217/246 (88.21%), Postives = 228/246 (92.68%), Query Frame = 1 
Query:    1 MLLAGTAVLPLIIPLLLV*PRGSMASTSKSYEKARASVEKATGHFADVQTISARDVLRLEQEGKRVLLVDVRTEEEMKVSMLRGALTRQAPQPSTTTCRQTQEFENSSLGEAARTGNQFQERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDLGYPSVRNSEGVVLWTHDVGNGLVARAAEQVESGDSPGSGPQNGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAFSKMFKKKKT 738
            MLLAGTAVLPLI+P+LLV P G MASTSKSYEKARASVEKATGHFADVQTISA+DVLRLEQEGK+VLLVDVRTE+EMKVSMLRGALTR+             EFENSSLGEAARTG +F+ERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDLGYPSVRNSEGVVLWTHDVGNGLVARAA++VESG SPGSGP+NGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAFSKMFKKKKT
Sbjct:    1 MLLAGTAVLPLIVPVLLVWPPGGMASTSKSYEKARASVEKATGHFADVQTISAKDVLRLEQEGKKVLLVDVRTEDEMKVSMLRGALTRE-------------EFENSSLGEAARTGKKFRERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDLGYPSVRNSEGVVLWTHDVGNGLVARAADEVESGGSPGSGPRNGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAFSKMFKKKKT 233
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: A0A6H5KXH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXH1_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.150e-35
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:   70 MASTSKSYEKARASVEKATGHFADVQTISARDVLRLEQEGKRVLLVDVRTEEEMKVSMLRGALTRQAPQPSTTTCRQT 303
            MASTSKSYEKARASVEKATGHFAD+QTISA+DVLRLEQEGK+VLLVDVRTE+EMKVSMLRGALTRQAPQPS TTC QT
Sbjct:    1 MASTSKSYEKARASVEKATGHFADIQTISAKDVLRLEQEGKKVLLVDVRTEDEMKVSMLRGALTRQAPQPSATTCLQT 78
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: A0A836CAM6_9STRA (Bile Acid:Na+ symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.770e-34
Identity = 82/207 (39.61%), Postives = 107/207 (51.69%), Query Frame = 1 
Query:   91 YEKARASVEKATGHFADVQTISARDVLRLEQEGKRVLLVDVRTEEEMKVSMLRGALTRQAPQPSTTTCRQTQEFENSSLGEAARTGNQFQERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDLGYPSVRNSEGVVLWTHDVGNGLVARAAEQVESGDSPGSGPQNGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAF 711
            Y KAR S    TG FAD+ T+SA +VLRL   G  VLLVDVR  EE  VSM+ GA++               EFE+S            +++ G    A   V PYCT+G+RSG YA+KL  LGY  VRN EG+V+WTHD+G+GLV R                   G E K +H +G PWD  + D+ ++ F    W  S  + A+
Sbjct:    5 YTKARESCMHYTGEFADIATLSALEVLRLRTNGTPVLLVDVRLPEEQDVSMIEGAIS-------------LDEFESSHR----------RDQYGPAALANTTVVPYCTIGYRSGAYARKLKTLGYRHVRNGEGIVMWTHDIGSGLVDR------------------DGRETKYVHTYGPPWDLVASDYHSVHFGVWNWIQSHSRGAW 170
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: R1D8G3_EMIHU (Rhodanese domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D8G3_EMIHU)

HSP 1 Score: 90.9 bits (224), Expect = 1.030e-17
Identity = 70/219 (31.96%), Postives = 100/219 (45.66%), Query Frame = 1 
Query:   76 STSKSYEKARASVEKATGHFADVQTISARDVLRLEQEGKRVLLVDVRTEEEMKVSMLRGALTRQAPQPSTTTCRQTQEFENSSLGEAARTGNQFQERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDLGYP-------SVRNSEGVVLWTHDVGNGLVARAAEQVESGDSPGSGPQNGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAF 711
            STS+  + A A +   T  FA +   SA DV+ ++Q G+ V+L+DVR+  E  VS L GAL + +                      A    +  ER      A  V+ P+CT+GFRSG Y + +   G          VRN EGVVLW+HDVG  +                      G  V+ LHV+GS WD A+D F+T+ F   G   + ++ A+
Sbjct:    2 STSRR-DAALAELRARTAGFAGLPLASASDVISMQQGGRDVILIDVRSPPERAVSTLPGALDQHS---------------------FAALAREEPERV-----AAAVLVPFCTIGFRSGLYCEWIRGGGLGMAASSELDVRNGEGVVLWSHDVGTFVQ--------------------DGAPVRSLHVYGSAWDLAADGFDTVTFGPAGHLSAALRVAW 173
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: A0A813CHA3_9DINO (Hypothetical protein (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CHA3_9DINO)

HSP 1 Score: 90.1 bits (222), Expect = 9.010e-17
Identity = 70/191 (36.65%), Postives = 101/191 (52.88%), Query Frame = 1 
Query:  181 QEGKRVLLVDVRTEEEMKVSMLRGALTRQAPQPSTTTCRQTQEFENSSLGEAARTGNQFQERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDL-GYPSVRNSEGVVLWTHDVGNGLV-----------ARAAEQVESGDSPGSGPQNGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAFSK 717
            ++G+ V+LVDVR +EEM VSM+ G++T++              FE+  L        Q             +V PYCTVG+RSG YAK+L+D  G  +VRN EGV++WT D G+GLV            +AAE  ++G++  S  Q      V R+HV+G PWD A++ + T  F+ TG     +K   SK
Sbjct:   40 EKGEDVVLVDVRCKEEMDVSMIPGSVTKE-------------HFESQLLPGLRAADPQP------------LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGVAGTVVGKAAE--DAGEALTSAWQP-----VTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCSK 197
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: A0A813HB18_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HB18_POLGL)

HSP 1 Score: 90.1 bits (222), Expect = 1.400e-15
Identity = 75/222 (33.78%), Postives = 110/222 (49.55%), Query Frame = 1 
Query:   94 EKARASVEKATGHFADVQTISARDVLRLEQEGKRVLLVDVRTEEEMKVSMLRGALTRQAPQPSTTTCRQTQEFENSSLGEAARTGNQFQERSGEGEEAWGVVAPYCTVGFRSGQYAKKLV-DLGYPSVRNSEGVVLWTHDVGNGLV-------ARAAE---QVESGDSPGSGPQNGSGV---------------EVKRLHVFGSPWDHASDDFETIKFTATG 681
            E+ARA  +K  G    ++T   R+ L    +G+ ++LVDVRT EEM+VSM+ GA+ +               FE   L +      Q  ++      +  ++ PYCTVG+RSG Y ++LV + G+ +VRN EGV++WT D G+ LV       +RA     QV    S G+ P +G                   V  +HV+G PWD A++ F TI FT  G
Sbjct:  213 EEARAKADK-EGPL--IETPELRERLA---KGEDIILVDVRTPEEMQVSMIPGAVAKDL-------------FEAEILPKLLEGRQQDGQQQAIDSLSSPLIVPYCTVGYRSGLYCRELVNEHGFSNVRNGEGVIMWTFD-GSVLVKPLPGAPSRAPALPPQVYGKGSEGAQPSSGEAAGLVSGGGTKTATAWQSVSEVHVYGKPWDMAAEGFTTIYFTPVG 414
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: A0A812UW94_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UW94_9DINO)

HSP 1 Score: 89.0 bits (219), Expect = 4.750e-15
Identity = 68/208 (32.69%), Postives = 105/208 (50.48%), Query Frame = 1 
Query:   97 KARASVEKATGHFAD-------VQTISARDVLRLEQEGKRVLLVDVRTEEEMKVSMLRGALTRQAPQPSTTTCRQTQEFENSSLGEAARTGNQFQERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDL-GYPSVRNSEGVVLWTHDVGNGLVARAAEQV-----ESGDSPGSGPQNGSGVEVKRLHVFGSPWDHASDDFETIKFTATG 681
            ++R    +A G FA           +   ++ +  ++G+ V+LVDVR +EEM VSM+ G++T++              FE+  L        Q             +V PYCTVG+RSG YAK+L++  G  +VRN EGV++WT D G+GLV  A         +S +  G  P   +   V R+HV+G PWD A++ + T  F+ +G
Sbjct:  587 RSREDALRAAGDFASKAGSQQAAPLLPTAELRQRLEKGENVVLVDVRCKEEMDVSMIPGSVTKE-------------HFESQLLPGLRAADPQP------------LVVPYCTVGYRSGVYAKELMNKHGLQNVRNGEGVIMWTFD-GSGLVRPAPGAPGTVVGKSAEDAGEAPST-AWEPVTRVHVYGKPWDMAAEGYTTEFFSQSG 767
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: A0A812J6E8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812J6E8_9DINO)

HSP 1 Score: 78.6 bits (192), Expect = 9.130e-14
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:  394 VVAPYCTVGFRSGQYAKKLVDL-GYPSVRNSEGVVLWTHDVGNGLV-----------ARAAEQVESGDSPGSGPQNGSGVEVKRLHVFGSPWDHASDDFETIKFTATG 681
            +V PYCTVG+RSG YAK+L+D  G  +VRN EGV++WT D G+GLV            +AAE  ++G++  S  Q      V R+HV+G PWD A++ + T  F+ TG
Sbjct:   32 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGVAGTVVGKAAE--DAGEALTSAWQP-----VTRVHVYGKPWDMAAEGYTTEFFSQTG 131
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: A0A812UEF0_9DINO (PPR4 protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812UEF0_9DINO)

HSP 1 Score: 82.8 bits (203), Expect = 2.890e-13
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 1 
Query:  394 VVAPYCTVGFRSGQYAKKLVDL-GYPSVRNSEGVVLWTHDVGNGLVARAAEQV--------------ESGDSPGSGPQNGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAFSK 717
            +V PYCTVG+RSG YAK+L+D  G  +VRN EGV++WT D G+GLV  A+  V              ++G++P S  Q      V R+HV+G PWD A++ + T  F+ TG     +K   SK
Sbjct:  351 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGAVGTVDSAQVVGKAAGDAGETPTSAWQP-----VTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCSK 467
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BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Match: A0A1Q9F5B3_SYMMI (Pentatricopeptide repeat-containing protein, chloroplastic n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F5B3_SYMMI)

HSP 1 Score: 79.7 bits (195), Expect = 3.880e-12
Identity = 51/120 (42.50%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:  394 VVAPYCTVGFRSGQYAKKLVDL-GYPSVRNSEGVVLWTHDVGNGLV-----------ARAAEQVESGDSPGSGPQNGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAFSK 717
            +V PYCTVG+RSG YAK+L+D  G  +VRN EGV++WT D G+GLV            +AAE  ++G++  S  Q      V R+HV+G PWD A++ + T  F+ TG     +K   SK
Sbjct:  439 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGVAGTVVGKAAE--DAGEALTSAWQP-----VTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCSK 550
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAT3_ECTSI2.300e-14288.21Bile Acid:Na+ symporter family n=1 Tax=Ectocarpus ... [more]
A0A6H5KXH1_9PHAE1.150e-3592.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAM6_9STRA6.770e-3439.61Bile Acid:Na+ symporter family n=1 Tax=Tribonema m... [more]
R1D8G3_EMIHU1.030e-1731.96Rhodanese domain-containing protein n=3 Tax=Emilia... [more]
A0A813CHA3_9DINO9.010e-1736.65Hypothetical protein (Fragment) n=2 Tax=Symbiodini... [more]
A0A813HB18_POLGL1.400e-1533.78Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A812UW94_9DINO4.750e-1532.69Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812J6E8_9DINO9.130e-1444.44Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A812UEF0_9DINO2.890e-1341.46PPR4 protein (Fragment) n=1 Tax=Symbiodinium sp. C... [more]
A0A1Q9F5B3_SYMMI3.880e-1242.50Pentatricopeptide repeat-containing protein, chlor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1565contigE-siliculosus-1a_F_contig1565:21271..27578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size672
Model size1385
Exons7
Ec32 orthologEc-27_006450.1
Ec32 ortholog descriptionRhodanese-like domain
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2E3Y9@1,2SAXP@2759
Seed eggNOG ortholog2880.D8LAT3
Seed ortholog evalue2.5e-105
Seed ortholog score388.3
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928076.8977373-UTR-E-siliculosus-1a_F_contig1565:21270..213391622928076.8977373-UTR-E-siliculosus-1a_F_contig1565:21270..21339Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1565 21271..21339 +
1696318797.2902706-UTR-E-siliculosus-1a_F_contig1565:21270..213391696318797.2902706-UTR-E-siliculosus-1a_F_contig1565:21270..21339Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1565 21271..21339 +
1622928077.0189862-UTR-E-siliculosus-1a_F_contig1565:26934..275781622928077.0189862-UTR-E-siliculosus-1a_F_contig1565:26934..27578Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1565 26935..27578 +
1696318797.381166-UTR-E-siliculosus-1a_F_contig1565:26934..275781696318797.381166-UTR-E-siliculosus-1a_F_contig1565:26934..27578Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1565 26935..27578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928076.9137752-CDS-E-siliculosus-1a_F_contig1565:21339..213901622928076.9137752-CDS-E-siliculosus-1a_F_contig1565:21339..21390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 21340..21390 +
1696318797.303573-CDS-E-siliculosus-1a_F_contig1565:21339..213901696318797.303573-CDS-E-siliculosus-1a_F_contig1565:21339..21390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 21340..21390 +
1622928076.9287772-CDS-E-siliculosus-1a_F_contig1565:23676..237431622928076.9287772-CDS-E-siliculosus-1a_F_contig1565:23676..23743Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 23677..23743 +
1696318797.3132873-CDS-E-siliculosus-1a_F_contig1565:23676..237431696318797.3132873-CDS-E-siliculosus-1a_F_contig1565:23676..23743Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 23677..23743 +
1622928076.9409525-CDS-E-siliculosus-1a_F_contig1565:24079..241991622928076.9409525-CDS-E-siliculosus-1a_F_contig1565:24079..24199Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 24080..24199 +
1696318797.3225367-CDS-E-siliculosus-1a_F_contig1565:24079..241991696318797.3225367-CDS-E-siliculosus-1a_F_contig1565:24079..24199Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 24080..24199 +
1622928076.9516883-CDS-E-siliculosus-1a_F_contig1565:24841..249951622928076.9516883-CDS-E-siliculosus-1a_F_contig1565:24841..24995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 24842..24995 +
1696318797.3345895-CDS-E-siliculosus-1a_F_contig1565:24841..249951696318797.3345895-CDS-E-siliculosus-1a_F_contig1565:24841..24995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 24842..24995 +
1622928076.9683404-CDS-E-siliculosus-1a_F_contig1565:25287..254261622928076.9683404-CDS-E-siliculosus-1a_F_contig1565:25287..25426Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 25288..25426 +
1696318797.3517604-CDS-E-siliculosus-1a_F_contig1565:25287..254261696318797.3517604-CDS-E-siliculosus-1a_F_contig1565:25287..25426Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 25288..25426 +
1622928076.9868295-CDS-E-siliculosus-1a_F_contig1565:26188..262711622928076.9868295-CDS-E-siliculosus-1a_F_contig1565:26188..26271Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 26189..26271 +
1696318797.365016-CDS-E-siliculosus-1a_F_contig1565:26188..262711696318797.365016-CDS-E-siliculosus-1a_F_contig1565:26188..26271Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 26189..26271 +
1622928076.999454-CDS-E-siliculosus-1a_F_contig1565:26876..269341622928076.999454-CDS-E-siliculosus-1a_F_contig1565:26876..26934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 26877..26934 +
1696318797.3730998-CDS-E-siliculosus-1a_F_contig1565:26876..269341696318797.3730998-CDS-E-siliculosus-1a_F_contig1565:26876..26934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1565 26877..26934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1565.3266.1prot_E-siliculosus-1a_F_contig1565.3266.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1565 21340..26934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1565.3266.1

>prot_E-siliculosus-1a_F_contig1565.3266.1 ID=prot_E-siliculosus-1a_F_contig1565.3266.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3266.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp
MASTSKSYEKARASVEKATGHFADVQTISARDVLRLEQEGKRVLLVDVRT
EEEMKVSMLRGALTRQAPQPSTTTCRQTQEFENSSLGEAARTGNQFQERS
GEGEEAWGVVAPYCTVGFRSGQYAKKLVDLGYPSVRNSEGVVLWTHDVGN
GLVARAAEQVESGDSPGSGPQNGSGVEVKRLHVFGSPWDHASDDFETIKF
TATGWFGSTVKSAFSKMFKKKKT*
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mRNA from alignment at E-siliculosus-1a_F_contig1565:21271..27578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1565.3266.1 ID=mRNA_E-siliculosus-1a_F_contig1565.3266.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3266.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6308bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1565:21271..27578+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGCTCGCTGGTACAGCCGTGCTGCCCCTCATTATTCCTCTTCTCCT
TGTATAGCCACGCGGGAGCATGGCTTCGACGTCTAAGAGCTACGAGAAAG
CCAGGGCTAGCGTTGAAAAGGTGTGCGTGACGCGTGACGTGCCCGCATCA
TCCGAGATGGGGCACTGCAGTCTACAGCAGTAGTGCCTGCTTCAAGTTGT
CAAGGTCTCTCGTGTCAACGCGCAGCGCTATTTCTCTGGCGATAATGTAT
CGTGTTAGAGTTGAACGAAAGCCTACAATCCCACGACGTTCCTTCAGGCT
TTGACCCCAGATGGATCATCGCAGCGAATCTTTGGGGACGGCAGCGGCTG
CACCCGAGCATGTTAATGTGTAGTCTAGCCGTAGTCTACTTGTGGGGAGA
CCATTCCCCTTGGCCTGACCTCTTCGTCCACGGTCTCCTGCTGCAATGTA
GAAAAAATAGTGTTATACGGCAACGAAGTGCAGAGTCCACTTTGGTGGTG
CGGGGCAAATCCTACAGCAAGTTGGGCCTGTAAAATGCATCATTCTCTCA
TCACGCTAAAGCTTCCATTGTAGGTGGGACGGGTCTGTCGGCTCCCGCAT
TTCGCAGATGCCGTTGCACAGTGGGGGAAAGGTTCTGCAAGCTGGCGTAA
GCCCAGTGTAACGTAGAGGGTGTGGATATCAGCGTATTTAGGCTGTAGCT
GTCATTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCT
CTACCCAGTACCTTCATAAGTCCGTACTGATCCAACACCTGATGCGGTCG
ATTCCCGTGGTCACAGGTTAACTTACCCTAAAAAGGTACACTCAAATAAA
CTGGCCCCGAGGGGTCCGCAAGTCAATAGAAATCAACGACAGATATTCTG
GAGTCCTCCGCTCCCTCTGCGCGCTATGCGAGGTAACAACTGAGACTACG
ACCATCACGGGCCAGAGAGAAAGAGGTACACCCCCTTGGTTCAATCTTGG
TGCTTCACACGCAAGCAGAGACAAGGCCATCTGACACAGAAAAAGAGAGA
AAAAAGAGAAAAAAGAGAAAAAAATAAAAGGAAACAGGAAGGAAAGAGAA
AAGAAAACGAACAAGAGCGAGGACAAAAGGGACCCAGGCCGAAAATAACA
AGAAATAAGGGACAGAAAAAGGCACACGGTGGAGAGACCACTAACGAACA
AGCAAACACGCAAACTTGGCCACCAACCGGCGATACATGGTAATGGTACG
TCATCACTAGTGGGGGGTTGGTGCAATGGTGCAGCGCTGGGGAGGGAGAA
TTGACGAAAAGGAATTCAATCCGGCATGTATCACGCCACTCGGTCCGTCT
CTTCTCGTTTGCCTTCTTCCCTCGCCGTCCCGTCCGTCTCCTGCCCCCCT
CCCGTCCCATTGGTTGTTGGCTTGTGGTCTCGTTTGAGCGCTCGTTGTCG
GCTGGCCTCTTCTTCCTTCTTGTGCCAGGAGGTCATGAACCTTTCAGCTC
CCTGCAGCACCGCCGCACGCCAAGGAACTCCCCCCTCCACCTTCGCGGCT
TCCGTCCACTTTAACTTCGGTGCCGTGTCTTTCGGTACCGGGATTCCGGG
ACAACATGGATCGTTTTTCGTAGATCCGTGTCATGCAGCAGAGTGAAGAT
TAAGATTCGTTCTATTAAAGTTCGCTGTTGACTGCTAGATGGATTATTGC
CGGAGGTGAGAAGGATCACGGATAGTGGAGAGAATAGCTTTTTCCTTTTA
GTTCTCGGAAGAACGGTTTTCTCCTCAATGGGTTTTGATGTCCGCGACCC
GCCTTGATCACTCCTCCTACTGCTGTAATCTAAGTACTCAAGCAATTTTT
GCGTCAAAACGAGATATTTCACGTGTGTCCCGACCACGTGGTTTCATGAT
CACAGCACAGGCTACGTACCAGCTGAATACGAGGAGGACCTTGACGAAAA
ATCGTGGCAAACATGTGTATCTGGGTTCCTCATATACCACTACTGTAGCT
CAGCCCCGCAGTACTATACTAGGTTTTCGTGGTTGTTGCAACACCGTCTT
GATTGAGGCAACCGTTGGTAGGAGTTTTGACTACTGCTGTCGGCGGACGG
CTCGCTGGGGCTGACGTGCGTTGTGCTAGATTGAGGGCGAAGGCACGAGA
TTGCGGCGGGCTTGCACCAGAGTGGTGGAAGGAACACCAATCCATCGCGT
ATCGATTCGCCTCGCCTAGTATTTACCGGTGTTCGGTATATGCATATGCG
GGTGTATGCTCTGTTGCGGCCTGTTCGATGGATGCTCCGTGGCATGCAAC
CGGTATGTGAGCCTGGTCGACGTAGATCTGTGTCGCGCTCATTTTCTGAG
CTTCTCGTCTTGAACGGCGGTCTTTCGTTCGGACATTGCCGTGCTTCTTT
ATTCAGGCAACGGGCCACTTCGCGGATGTCCAGACAATCTCTGCCAGAGA
TGTTCTACGGCTAGAACAAGAAGGTGAGAGAGCGGTGCGGTCGTTGGTTG
GCCTCAAGTGCTTCTAATAGGCAGCACCATGACGGTGCGCTCGGTTGCGT
ACGTCCTTTGTCGTCGGCAGGCGGGCATCCCGGTGAACGGCCTACAATGT
TACTGTGCGAATGCTCTTCTTTTTCGTCCAAACTTTCGGCGTCGACTTAG
GGAATCGAGCGCAACATCAGGCAATGTCTCCTGATAAGCAAACTATAGAC
GCAATTCCCTCCTGAGCATGCTTGGGGTCATGACTAGCAAGCTTTGCACT
CGCTCCTCGCTTCACGCGGTCCTTCGCCACGTATCGAAACGCTTCTAAAC
GCCACCAAGGGAAAAGAGTGCTTCTGGTCGACGTTCGTACGGAGGAAGAG
ATGAAGGTTTCCATGCTCCGAGGCGCTCTTACCAGGCAAGCCCCCCAGCC
CTCAACCACTACCTGCCGGCAAACACAGGGTTGTTTTGTACTCAACGATC
GTTGGTCTTGTTGTCTTCTGTGCTGCTGTTCCTTCACAAACCATCGTCTT
GACCTCTCTATCCGGCACGTCCTCTTCCATACCGCAGAACTCGCCACCAA
TTCAAGAACCTGTTGAGCTGGGCAACCGTCGCGGGTTGTTTCTCCATGAA
GAAACCTACAGATGATGTTAAGGGGGTCCAAGATCTTTGAATGTACAACA
AATACCCTCAAGTGATTTTTTGAACTGTGCTCTTAATGCAACAACTGTGA
ACATTTGCAACAACTGAGAGGGTTGTGAGTGCAACGACTGCGTCATCACC
GACGAGGGCGCCCAGCATCGTCGTCCGCCACTTCTTGGGTTCGCATGCTA
CCTGAAATGGCCGACAGGAAGTTGCGCCGCCTCTGTGTGTGTCTGCTACG
CACTCGTGCGTTTCTTTGCTCTAGAAATATATATATGCATCCAAACACAG
AAAGACTTCCCGTTCAAGATAATACCACAGAGAAGTCGAAGGAGATGTGT
TGAGTTTTTTCAGTGAGTTGGAAGAAAACAGACGTGTGATCCGCTCGCTT
CGGTCCCAGATCGCGGCAGGAGTAAGCCTGACATTTTACGCCCATCTGAT
CTTGAGAAAAACACAGGGAAGAGTTCGAGAACAGCAGCCTGGGAGAGGCG
GCCAGGACCGGGAATCAGTTCCAAGAACGTTCCGGGGAAGGCGAGGAGGC
TTGGGGCGTCGTGGCGCCGTACTGTACGGTTGGATTTCGTTCCGGCCAGT
ACGCCAAGAAGCTTGTGGACTTGGGGTACGTTAGTCCCGACGTACTGTGT
GGTGTGCACTACTGTATACTACCCAACGTTATTACGGTAGCATTGACCGG
GAGGCTGCGGTGGATATTATCATGGGTTCTCCGACAAAGGGAAGTGGCAC
GCACGCCAGTCCGGCCACCGCGGGAGCGACCGACCAAGCAGCGCATTCAA
GATTTGTCAAACACCTTTTCGGCTGGGGCAAGTTGCGTTGGGTGCCTCTT
GTTGATGATTTCTTTCAACGTCTCGTCTAACCACGACTTCCACCCTCTCC
TTCCACTTGCTGTGAAGATACCCGTCGGTGAGAAACAGTGAGGGAGTCGT
TTTGTGGACCCACGACGTCGGCAACGGCTTGGTTGCGCGCGCCGCAGAGC
AGGTGGAATCCGGGGATAGCCCCGGAAGCGGTCCTCAGAACGGTTCTGGT
GTTGAGGTGAGCTTGGTCGGGCTAAGGCTGCCGGCGAATCTCTCTGCATA
AGAAGTGTTTCGTAGGTGTGCATTGAAAAGCTGTGAACGGCGCTTTCTGC
CGCCAAATATTCACAAGGTTTCTTTAGCTTTTTCTTCATTACTGATAGGG
CGGTCCGGATGTAGCTCGGAACAATTTTTGGCGTCAAGACGAAAGCTACA
ACAACAACAACAGCAATGGTGAGCAATGGTTTCGATCAAACAAGCAAAGC
CAGACTTAACATCCAGAAACCCCACCGATTCCTCGTCTTACACCACAAGA
AGCACGCTCACCGAATGCAGTATGTCGCGAACGCACACAACGTTGGATCC
ACATCAGCGGAATCAATTCACTCCTGCCTTAGCTTGTTTCACTCGCCCCA
GTATTCCTGTAACCTCGAAGCTTACAAAAGAACTTGAATTCGAGGTTAGG
GGCAGTCGCACGATTGGGACAAATGTGAATGATGAACGATTTCCTCGTGA
ATACAAACAAGGTTGATTTCATTGGTCGACGAGGGAAACGAACGGCGTAG
TCCTAGTCGTGACAAAAATTCGGACAGGCAGCGCAGGCTGTAGACAGAAG
GAAAAATATCCTGCTCCCGACAGATGCGCCCGGAAAAGAAGAAAAGGTAT
ACGCCGGAGTAGAATCCAACGCGCACAATCCTTGACGCCGCTTGATTATC
GGCCAGCCGGTTAATTGTTCGATACTAGCTGAAGAAACACACTGCTGTCT
CGCCTGCTGACCCGGCAGGTCAAGCGATTGCACGTGTTCGGGTCACCCTG
GGACCACGCAAGCGACGACTTTGAGACGATCAAGTTCACCGCGACAGGAT
GGTAAGCTTGTCGTATTGGACGCGTGTTTTAGAGTGAAAATCTCGGTTGT
TGTTTTTGGGATACGGTATTGGGATACGTTGTGTTGGGGAACTTCAGTTT
TTTGTTTTTTGTTTTTCTTAGCGGCATTTGGAAGTCTTTGCTGTGTCGCC
AAGATCTGTTCGGGTGATAGTGCAGAATATCTGCTTCGCTACACAGCAAT
TGTGAATATGAAGACAGCCACATCAGGGTTAAACAACAGGTATCAGGCTG
CACTCGAACCCACAGGATGAGGTGTTTGTTCACCGAAATACCTAATTCTG
GTCATGTGGAAGGAAATCTGGCAATTTTTCATTCTGTCCCTGAGCTGGAC
TTCTATGTTTTCGGGCTGTGGCATATCGATTGAGTATATTGGTTTTTTTC
GAGTGCGTCGTTGTGAAGTGCGATTGCTTTGTCCAAGCGATCTCGATCGA
CACGCCTGTATCGATGCTGCCACGTTTCGCTTCGCCGTACTTGCCCGCGT
TGTGTTTGAGGTCCTCTCGGGAGTTCCATGCCACTGAAACTGAACGATTC
CCGTACCCCGCCGTCTGCTATGTACCCGCCTGCTTTCGGTGCAATGAAAC
GGCCAGGTTTGGGTCGACCGTGAAATCGGCGTTTTCCAAGATGTTTAAGA
AGAAGAAAACATGACCCGGTGGCTGGAAGCGTCACAAAAGGATTGTTCTC
TGAAATGGTGGCGTTGTAGCCCCAGCAGGACTAGACTTTATTGCCTGCCT
GCGGCGGACTCCAGCAAGGCTAAATAGTAGATCACTTCACCTCAGGTGGA
GGTAGGTTTCTTCGGCTGCAGTACAGGGGCATGTCGTGTTGTTCGAAAAC
GTTGTCCGCACAAAGCTGGAGGAGTGTATTCCGGGCTAACTACGACTGCA
CTGCGTCTGAGTCGCTACAGCCATTGTGCCATATTTGACGTGTTGAATGT
AAGATTATTTCTTGAGCAAGAGAATATACACTGGCACGAAACCGCCCGCG
GGTCGCCATTTTGGATAGGGGGAGGGCAGTTTCAAATTTGTTTCGTGAGC
GTGGCCGCCGGAACCTTTAGTTGAACCCTCGTGTGCATTCCAAAGAGGGA
GCGACTACTGTAGGCCTTCATCTCTGTAGGCATCGTTGCCGCCTTAGGTC
GGAACACGTGGTATGTTTTGTTTCCTGCAGTTGGTATTTAGGATTGGTTC
TCAAGTTTCGGGGTTGCCGTGAGCCCACTTTCTCGACGTGCAATGTTTCG
ATCAAGCCGTTGAATGAAACGACACATCCATCCATCTGTTAAACAAGTGA
ATCTTGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1565:21271..27578+

>mRNA_E-siliculosus-1a_F_contig1565.3266.1 ID=mRNA_E-siliculosus-1a_F_contig1565.3266.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3266.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1565:21271..27578+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCGACGTCTAAGAGCTACGAGAAAGCCAGGGCTAGCGTTGAAAA
GATGGCTTCGACGTCTAAGAGCTACGAGAAAGCCAGGGCTAGCGTTGAAA
AGGCAACGGGCCACTTCGCGGATGTCCAGACAATCTCTGCCAGAGATGTT
CTACGGCTAGAACAAGAAGGCAACGGGCCACTTCGCGGATGTCCAGACAA
TCTCTGCCAGAGATGTTCTACGGCTAGAACAAGAAGGGAAAAGAGTGCTT
CTGGTCGACGTTCGTACGGAGGAAGAGATGAAGGTTTCCATGCTCCGAGG
CGCTCTTACCAGGCAAGCCCCCCAGCCCTCAACCACTACCTGCCGGCAAA
CACAGGGGAAAAGAGTGCTTCTGGTCGACGTTCGTACGGAGGAAGAGATG
AAGGTTTCCATGCTCCGAGGCGCTCTTACCAGGCAAGCCCCCCAGCCCTC
AACCACTACCTGCCGGCAAACACAGGAGTTCGAGAACAGCAGCCTGGGAG
AGGCGGCCAGGACCGGGAATCAGTTCCAAGAACGTTCCGGGGAAGGCGAG
GAGGCTTGGGGCGTCGTGGCGCCGTACTGTACGGTTGGATTTCGTTCCGG
CCAGTACGCCAAGAAGCTTGTGGACTTGGGAGTTCGAGAACAGCAGCCTG
GGAGAGGCGGCCAGGACCGGGAATCAGTTCCAAGAACGTTCCGGGGAAGG
CGAGGAGGCTTGGGGCGTCGTGGCGCCGTACTGTACGGTTGGATTTCGTT
CCGGCCAGTACGCCAAGAAGCTTGTGGACTTGGGATACCCGTCGGTGAGA
AACAGTGAGGGAGTCGTTTTGTGGACCCACGACGTCGGCAACGGCTTGGT
TGCGCGCGCCGCAGAGCAGGTGGAATCCGGGGATAGCCCCGGAAGCGGTC
CTCAGAACGGTTCTGGTGTTGAGATACCCGTCGGTGAGAAACAGTGAGGG
AGTCGTTTTGTGGACCCACGACGTCGGCAACGGCTTGGTTGCGCGCGCCG
CAGAGCAGGTGGAATCCGGGGATAGCCCCGGAAGCGGTCCTCAGAACGGT
TCTGGTGTTGAGGTCAAGCGATTGCACGTGTTCGGGTCACCCTGGGACCA
CGCAAGCGACGACTTTGAGACGATCAAGTTCACCGCGACAGGATGGTCAA
GCGATTGCACGTGTTCGGGTCACCCTGGGACCACGCAAGCGACGACTTTG
AGACGATCAAGTTCACCGCGACAGGATGGTTTGGGTCGACCGTGAAATCG
GCGTTTTCCAAGATGTTTAAGAAGAAGAAAACATGAGTTTGGGTCGACCG
TGAAATCGGCGTTTTCCAAGATGTTTAAGAAGAAGAAAACATGA
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