mRNA_E-siliculosus-1a_F_contig1565.3263.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: D8LAT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT7_ECTSI) HSP 1 Score: 432 bits (1111), Expect = 9.340e-146 Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 3
Query: 228 MNLFGKAKAKPQATDTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 944
MNLFGKAKAKPQA DTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM
Sbjct: 1 MNLFGKAKAKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 239
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: A0A6H5KZ84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ84_9PHAE) HSP 1 Score: 258 bits (659), Expect = 1.660e-79 Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 3
Query: 513 MNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 944
MNMQTFNAMRSGAKAM+ ARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVP+GYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM
Sbjct: 1 MNMQTFNAMRSGAKAMEGARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPQGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 144
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: A0A836CAA0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA0_9STRA) HSP 1 Score: 261 bits (667), Expect = 3.510e-79 Identity = 164/250 (65.60%), Postives = 187/250 (74.80%), Query Frame = 3
Query: 228 MNLFGKAK--AKPQATDTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAA-----------PQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASM 938
MNLFGK K A TD T TI+KL+ET+D+L+KRE H+QKKIKAQLL+AKAKS DK+GALFALKRKKMYE E+NK+NGAR+TLE Q IALEGSN N+QTF AM SG KAMQ ARG+LDVD VD VMDDI++EMDIA+QIG+AIARPA+ LFDDD LL EL +EEA++EE LLA PAVP P+A P G QP A S G +LPSVP T V P A EEDED RALRELEASM
Sbjct: 1 MNLFGKKKSAASGTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQT-DKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGS-SGMDLPSVP-TGDVRVPAA-EEDEDLRALRELEASM 246
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: A0A1W0A9Q0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q0_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.780e-56 Identity = 128/244 (52.46%), Postives = 165/244 (67.62%), Query Frame = 3
Query: 228 MNLFGKAKAKPQAT---DTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD-LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDA-RALRELEASMAM 944
MNLFG+ A P T +T TI KLRE LD L+KRE+HI+KKI+AQL +AK KS+AKDKRGA+F LKRKKMYE E+ KL GARMTLE+Q++ LE + +NMQTF A+R+GA M+ G+++VD VDD+MDDI++EM A++IG AI++P + L+DDD L ELDML E DLE+QL A +PA Q PA A + + P PS + V+ + D D LR LEASMAM
Sbjct: 1 MNLFGRKAAAPVKTGPAETAETIRKLREQLDILEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELDMLVEEDLEKQLDAA----HQQPAPAQPARVPAQAPATAASMFTFPEAPSHAVTNIKVSGKADADELEELRRLEASMAM 240
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: A0A482SS87_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS87_9ARCH) HSP 1 Score: 198 bits (504), Expect = 1.420e-55 Identity = 129/245 (52.65%), Postives = 165/245 (67.35%), Query Frame = 3
Query: 228 MNLFGKAKAKPQATDTTS---TILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLL--APPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPS--TTPV-SAPVAVEEDEDARALRELEASM 938
MNLFGK K Q T S TI KLRE+L+ L+KRE HI KKI A L +AK KS KDK GALFALKRKK+YE EV KL GAR+T+E+QI++LE +++N++TF AM++GA AM+ RG +D D+VDDVMD + +E DI + I +AI+RP DLF+D+ LL+EL L+ ++E + PA P A P PQ V + P+VP+ +PV S PVA EEDED RALRELEASM
Sbjct: 1 MNLFGKKKQAQQPVPTQSPIETIAKLRESLNILEKREEHINKKIDASLQEAKLKSQKKDKNGALFALKRKKLYEAEVAKLQGARITMETQILSLESASVNIETFKAMKTGANAMKAMRGDIDADKVDDVMDALAEEKDIQDAISEAISRPGQDLFNDEELLDELAELDALEMEASVANTVAPAAPVAPP--PQSV-------------FNFPAVPTKAVSPVPSKPVAHEEDEDERALRELEASM 230
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: A0A7S3XYN0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYN0_HETAK) HSP 1 Score: 196 bits (497), Expect = 1.630e-54 Identity = 119/242 (49.17%), Postives = 164/242 (67.77%), Query Frame = 3
Query: 228 MNLFGKAK--AKPQATDTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEED-EDARALRELEASMAM 944
MNLFGK K A P AT+T TI++LR T+++LDKRE I KI Q +AKAK KD+RGA+F LKRKKMYE E++KLNGA++ LE QI ALEG+++N + F A R+ A++ ARG +D D V++ +DDI +EM++A +IG+AI+RPA +LF+D+ LL+EL LEE +EE LLA PA P P A AVAE Y+LP+ P+ ++ + + D +D ALR LEA +A+
Sbjct: 1 MNLFGKKKKAAVPAATNTADTIIRLRGTIETLDKRETFIAAKIVQQTNEAKAKLKKKDQRGAMFCLKRKKMYEKEIDKLNGAKLQLEQQIFALEGAHINTEAFEASRAAVGALKAARGNIDADTVEETLDDINEEMELANEIGEAISRPAQELFEDEELLDELRELEELGVEEDLLAAPAAPVRAPPAA------AVAEEAKQPAYDLPAAPTGAVAASAIQGDVDADDLDALRALEAELAV 236
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: A0A7S3NK50_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK50_9STRA) HSP 1 Score: 191 bits (485), Expect = 5.980e-53 Identity = 118/244 (48.36%), Postives = 155/244 (63.52%), Query Frame = 3
Query: 228 MNLFGKAKAKPQAT-----DTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 944
MNLFGK KA T D TIL+LR T+++L+KR+ H+ KKI+ QL +AK K + KDKRGAL+ LKRKKMYEGE+ K+NGAR+TLE Q+IA+EG+ N +T AM +G AM AR + VD V ++MDDI DE++ A I +AI+ PA+ + DD+ LL EL+ LEE +LE QLL PAVP +LP VP+ TP +ED D +ALRELEA+MA+
Sbjct: 1 MNLFGKKKAAGSGTGGGNVDPAQTILQLRNTVETLEKRQVHLDKKIEQQLAEAKVKIAKKDKRGALYCLKRKKMYEGEIEKINGARLTLEQQMIAIEGTVTNSETVKAMTAGKDAMAKARAGVTVDDVGELMDDITDEVEQANDIAEAISAPANQVLDDEDLLNELNELEELELESQLLDAPAVPAT--------------------AIDLPDVPTATPEIPVQQNQEDADTKALRELEAAMAL 224
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: A0A418AQT0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A418AQT0_9STRA) HSP 1 Score: 189 bits (480), Expect = 1.110e-51 Identity = 121/244 (49.59%), Postives = 161/244 (65.98%), Query Frame = 3
Query: 228 MNLFGKAKAKPQAT---DTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD-LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDA-RALRELEASMAM 944
MNLFG+ P T DT TI K+RE LD+L+KRE HI+KK++ QL +AK KS+AKDKRGA+F LKRKKMYE E+ KL GARMTLE+Q++ LE + +NM TF A+RSGA M+ G+++VD VDD+MDDI++EM A++IG AI++P + L+D+D L ++L L++ +EEQL P V A PQ Q A A+ + LP VP+ V + D D LR LEASMAM
Sbjct: 24 MNLFGRKAPAPVRTSPADTAETIRKIREQLDTLEKREAHIEKKMELQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMATFTALRSGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDEDELEQQLRELDDLAMEEQLATPSPVAAPVQARPQPA-QAAPAQQPAQAMFNLPEVPTHAVSQVKVTGKADADELEELRRLEASMAM 266
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: A0A6G0XHZ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHZ3_9STRA) HSP 1 Score: 188 bits (477), Expect = 1.690e-51 Identity = 123/247 (49.80%), Postives = 160/247 (64.78%), Query Frame = 3
Query: 228 MNLFGKAKAKPQAT---DTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARP-ADDLFDDDALLEELDMLEEADLEEQLL--APPAVPTA-RPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDA-RALRELEASMAM 944
MNLFG+ P T DT TI KLRE LD+L+KRE+HI+KKI QL +AK KS+AKDKRGA+F LKRKKMYE E+ KL GARMTLE+Q++ LE + +NM TF AMR G + M+ G+++V+ VDD+MDDI++EM A +I AI++P + L+DDD L EL LE+ +EE+L P A P A RP A ++P A++ P LP P+ V + D D LR LEASMAM
Sbjct: 1 MNLFGRKAPAPVRTSPSDTAETIRKLREQLDTLEKRESHIEKKIALQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMATFQAMRVGTQQMKAIHGQMNVESVDDIMDDIQEEMATANEIAQAISQPIGNTLYDDDELESELAALEDLAMEEELANATPVAAPAAVRPPAQPVAQRPQPAQAVSPAVLNLPEAPTHAVSQVKVTGKADADELEELRRLEASMAM 247
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Match: A0A067BTB4_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BTB4_SAPPC) HSP 1 Score: 186 bits (472), Expect = 7.800e-51 Identity = 119/244 (48.77%), Postives = 161/244 (65.98%), Query Frame = 3
Query: 228 MNLFGKAKAKPQAT---DTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD-LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDA-RALRELEASMAM 944
MN FG+ A P T +T TI KLRE LD+L+KRE+HI+KKI+AQL +AK KS+AKDKRGA+F LKRKKMYE E+ KL GARMTLE+Q+I LE + +NMQTF A+R+GA M+ G+++VD VDD+MDDI++EM A++IG AI++P + L+DDD L EL+ + + +LE+QL + PT + A P + P P+ + V+ + D D LR LEASMAM
Sbjct: 1 MNFFGRKAAAPVKTGPAETAETIRKLREQLDTLEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVITLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELESMMDEELEKQLDSSRPTPT-QVAQPARXXXXXXXXXXXXSMFAFPDAPTHPVTNIKVSGKADADELEELRRLEASMAM 243 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1565.3263.1 >prot_E-siliculosus-1a_F_contig1565.3263.1 ID=prot_E-siliculosus-1a_F_contig1565.3263.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3263.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=240bp MNLFGKAKAKPQATDTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAback to top mRNA from alignment at E-siliculosus-1a_F_contig1565:7083..12682+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1565.3263.1 ID=mRNA_E-siliculosus-1a_F_contig1565.3263.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3263.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5600bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1565:7083..12682+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1565:7083..12682+ >mRNA_E-siliculosus-1a_F_contig1565.3263.1 ID=mRNA_E-siliculosus-1a_F_contig1565.3263.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3263.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1440bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1565:7083..12682+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |