mRNA_E-siliculosus-1a_F_contig15642.3261.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15642.3261.1
Unique NamemRNA_E-siliculosus-1a_F_contig15642.3261.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15642.3261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15642contigE-siliculosus-1a_F_contig15642:86..726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size234
Model size240
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15642.3261.1prot_E-siliculosus-1a_F_contig15642.3261.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15642 86..720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928076.4154596-CDS-E-siliculosus-1a_F_contig15642:85..1581622928076.4154596-CDS-E-siliculosus-1a_F_contig15642:85..158Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15642 86..158 -
1696318797.0185478-CDS-E-siliculosus-1a_F_contig15642:85..1581696318797.0185478-CDS-E-siliculosus-1a_F_contig15642:85..158Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15642 86..158 -
1622928076.4300294-CDS-E-siliculosus-1a_F_contig15642:559..7201622928076.4300294-CDS-E-siliculosus-1a_F_contig15642:559..720Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15642 560..720 -
1696318797.0265398-CDS-E-siliculosus-1a_F_contig15642:559..7201696318797.0265398-CDS-E-siliculosus-1a_F_contig15642:559..720Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15642 560..720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928076.4439662-UTR-E-siliculosus-1a_F_contig15642:720..7261622928076.4439662-UTR-E-siliculosus-1a_F_contig15642:720..726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15642 721..726 -
1696318797.0346227-UTR-E-siliculosus-1a_F_contig15642:720..7261696318797.0346227-UTR-E-siliculosus-1a_F_contig15642:720..726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15642 721..726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15642.3261.1

>prot_E-siliculosus-1a_F_contig15642.3261.1 ID=prot_E-siliculosus-1a_F_contig15642.3261.1|Name=mRNA_E-siliculosus-1a_F_contig15642.3261.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp
MRGTHTPHVISVQYRHFTDHSPYFGPTVGPIPPELGKLGALKHLLLGGNQ
LSGEIPEELGKLTALQELTLYNNQLSGE
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mRNA from alignment at E-siliculosus-1a_F_contig15642:86..726-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15642.3261.1 ID=mRNA_E-siliculosus-1a_F_contig15642.3261.1|Name=mRNA_E-siliculosus-1a_F_contig15642.3261.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=641bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15642:86..726- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCACCATGCGCGGGACACATACTCCACACGTAATCTCGGTGCAATACCG
GCACTTTACTGACCATTCTCCGTATTTCGGACCTACCGTAGGGCCGATAC
CGCCGGAGCTTGGTAAACTGGGCGCTCTGAAACATCTCTTGCTCGGTGGC
AATCAGCTGAGTGGTGAGTTGCTGGCTGGCACAACGAATAAGTAGAAATG
GAAGTTGCTCCGCTGGCTTCTAGAAGGCTACTCGCGCACGCCAACGCAGT
AGGCGAGTACGAAATTTCACAATTGCACGTAGCAAAAGATGTCCCGCTGA
TGATTTGTATTCTCTCTTCCGATTGCAGGTTCCACCCCGCCGGAGCTCGG
AAATCTCAAAGAGCTCAAAGCGCTGAGGCTCTTCAACAACGAGCTCGCAG
GTGAGTTTTTTTTCATTTGTTGCGGAAATTTCAATTTATTCTATGTTTCC
ACGGGTGGACCCTGCCGATGCTAGCGGGTGAGAACGAAATTTCAGAACTC
GCGGGATATCTTTTATTTTTCCTCACTACATTCGTATTTCATCATACGGT
TCTTCACCTCACAGGAAGGATACCGGAGGAGCTAGGGAAGCTCACTGCGC
TACAGGAGCTTACTCTGTACAACAACCAGCTTTCAGGTGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15642:86..726-

>mRNA_E-siliculosus-1a_F_contig15642.3261.1 ID=mRNA_E-siliculosus-1a_F_contig15642.3261.1|Name=mRNA_E-siliculosus-1a_F_contig15642.3261.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15642:86..726- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCGGGACACATACTCCACACGTAATCTCGGTGCAATACCGGCACTT
TACTGACCATTCTCCGTATTTCGGACCTACCGTAGGGCCGATACCGCCGG
AGCTTGGTAAACTGGGCGCTCTGAAACATCTCTTGCTCGGTGGCAATCAG
CTGAGTGGTGAATGCGCGGGACACATACTCCACACGTAATCTCGGTGCAA
TACCGGCACTTTACTGACCATTCTCCGTATTTCGGACCTACCGTAGGGCC
GATACCGCCGGAGCTTGGTAAACTGGGCGCTCTGAAACATCTCTTGCTCG
GTGGCAATCAGCTGAGTGGTGAGATACCGGAGGAGCTAGGGAAGCTCACT
GCGCTACAGGAGCTTACTCTGTACAACAACCAGCTTTCAGGTGAGGATAC
CGGAGGAGCTAGGGAAGCTCACTGCGCTACAGGAGCTTACTCTGTACAAC
AACCAGCTTTCAGGTGAG
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