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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3259.1 vs. uniprot
Match: A0A6H5L9T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T3_9PHAE) HSP 1 Score: 365 bits (936), Expect = 8.500e-124 Identity = 199/234 (85.04%), Postives = 206/234 (88.03%), Query Frame = 2
Query: 62 MRVLVASVVGTAFLLGAEDCRIITEAFAHPPVPRTGASGRSTAGNNRGLAVIRRRAPAGFFRSGTAVSSSRSEGEAGEERQRRRPTHRGAGSGGDLDLKEAAPPXXXXXXXXXXSTLAPLRQTAATALAAVLMLASTEQDIMTAMMGLDPSLATSTAAQPTMTVPKEEGPQAGGGKAPSMGSIDVRGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 763
MRVLVASVVGT FLLGAEDCR+ITEAFAHPPVPRTGASGR TAGN+RGLAV+R RAPA FFRSGT VSSSR EGEAGEE QRRRP HRGA SG DLDLK AAP + LAPL QTA TALAA+LMLASTEQDIMTAMMGLDPSLATSTAAQP MT+PKEEGPQA GGKA SMGSIDV+GQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH
Sbjct: 1 MRVLVASVVGTTFLLGAEDCRVITEAFAHPPVPRTGASGRGTAGNSRGLAVVRTRAPAAFFRSGTDVSSSRPEGEAGEEGQRRRPAHRGASSGSDLDLKGAAPRHRSSRAAAAVAALAPLPQTAVTALAAILMLASTEQDIMTAMMGLDPSLATSTAAQPAMTLPKEEGPQAKGGKASSMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 234
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3259.1 vs. uniprot
Match: D8LDN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN5_ECTSI) HSP 1 Score: 188 bits (477), Expect = 2.750e-56 Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 2
Query: 458 MLASTEQDIMTAMMGLDPSLATSTAAQPTMTVPKEEGPQAGGGKAPSMGSIDVRGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 763
MLASTEQDIMTAMMGLDPSLATSTAAQP MT+PKEEGPQA GGKAPSMGSIDV+GQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH
Sbjct: 1 MLASTEQDIMTAMMGLDPSLATSTAAQPAMTLPKEEGPQAKGGKAPSMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 102
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 705 |
| Model size | 1096 |
| Exons | 3 |
| Ec32 ortholog | Ec-19_001340.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | chloroplast |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928076.3226533-UTR-E-siliculosus-1a_F_contig1564:21969..22030 | 1622928076.3226533-UTR-E-siliculosus-1a_F_contig1564:21969..22030 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1564 21970..22030 + |
| 1696318796.9796684-UTR-E-siliculosus-1a_F_contig1564:21969..22030 | 1696318796.9796684-UTR-E-siliculosus-1a_F_contig1564:21969..22030 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1564 21970..22030 + |
| 1622928076.378055-UTR-E-siliculosus-1a_F_contig1564:24465..24795 | 1622928076.378055-UTR-E-siliculosus-1a_F_contig1564:24465..24795 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1564 24466..24795 + |
| 1696318797.0103788-UTR-E-siliculosus-1a_F_contig1564:24465..24795 | 1696318797.0103788-UTR-E-siliculosus-1a_F_contig1564:24465..24795 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1564 24466..24795 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1564.3259.1 >prot_E-siliculosus-1a_F_contig1564.3259.1 ID=prot_E-siliculosus-1a_F_contig1564.3259.1|Name=mRNA_E-siliculosus-1a_F_contig1564.3259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=235bp
MRVLVASVVGTAFLLGAEDCRIITEAFAHPPVPRTGASGRSTAGNNRGLA
VIRRRAPAGFFRSGTAVSSSRSEGEAGEERQRRRPTHRGAGSGGDLDLKE
AAPPRRSSRAAAAASTLAPLRQTAATALAAVLMLASTEQDIMTAMMGLDP
SLATSTAAQPTMTVPKEEGPQAGGGKAPSMGSIDVRGQGDALGEIAGGPG
GGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH* back to topmRNA from alignment at E-siliculosus-1a_F_contig1564:21970..24795+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1564.3259.1 ID=mRNA_E-siliculosus-1a_F_contig1564.3259.1|Name=mRNA_E-siliculosus-1a_F_contig1564.3259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2826bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1564:21970..24795+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCATGTCTGCGTGCACGTGCTACCGCAGCATCGCACAACGCCTTCGGCC
TTTGCTTCACCATGAGAGTGCTTGTGGCTTCAGTTGTCGGGACAGCGTTT
TTGCTGGGAGCAGAAGGTCAGTCGGGTCGATTTACATCACACAATGGACT
GGACGGGTCATGTTGACAACGGAAGTGACACAGGTCATCATGCGTACTAC
GGCGGTACAGCAGCAGCTACGGCTGCATGTAGTCTAGCCCTCTGTCACGT
TGATGCCCTCCGCGTTGGGCCACGTGTTTTTGAAGTCTACCGCAGGGTGG
TCGCCATCTGAGGGAGGCGTTTTGGCAGCAGTGCATGCAACCGCTATGCA
TACAACTCAACGGAGAGACTGCTGTACTTCTCCGGTTGCATCTCTCGGCT
TGACCATGATGAACCACCTGATGAACCAACCGCCGAGTAAGATGTGAACG
GTGGCAAAAAAGCAAAAGGGGCTCGTTCTGCGATGCCACATTGATGTCAT
AAGATAACTCGGTATATATGTCCTGGGCTGTGCTCAGCAGTTTCGTGCAC
TGAGTTAAACGTGAGACGAGCGGTCAATAGAGTGTCGGCGAGTACTTTTT
GAATACAATGAATAGGTTGTTGACGGGAGCAGTTGTCTGTTGTTGGTGTA
CGCGGGGCTCTCCTCATGCTCGCTTCTGGTAAGGTATTTGAAAGCTGCTC
CACCCATTGGTGAAACCCCAAGCCGCTCTAGCTCCCAGCGTGAACGACCG
TTGGGCGGGGAAGTCTTCTGAGCACGTGTGCGCGAACGGCTTCGCCACCA
TCCTGGGACACGGAACAGATGGAGAAATCTCGCTTACATGCATCAACCTC
ACCTCGCTCGCACCCGGCTTGTTCCCTGCCAGACTGCCGCATCATCACAG
AGGCGTTCGCACACCCACCTGTTCCGCGAACGGGAGCTTCGGGACGAAGT
ACTGCTGGAAATAACCGCGGCCTGGCGGTTATCCGGAGACGCGCACCGGC
GGGTTTCTTCCGCTCCGGTACGGCGGTCTCATCGTCCCGATCCGAGGGGG
AAGCCGGGGAGGAGAGGCAACGGAGGCGGCCGACGCATCGAGGTGGTAAG
ATCCTGGGTACGCTCTGCCATGCACCGTCGTCGTCGCGGAGTTGATGTTC
TCTGGTTGGTCTCTGGTATGTTTCGCCCTTACGACATTGGCTGTTTTTTT
TGCCAAGATATCTGTAGTCTGTGTTCTATGTCAAGAGTAGCAATGACAGC
GGCGGGACAAAAGCAGGGCCGTTAGCTTTTCACTCTATCGAGGCCGGCGG
CACAAACGTCGCTGCCGGGATTGCCGATATCCTTCGTCAACCAACCGCCC
CAACCCACGAGCAACACAACCCATGACTTGCGCCACCACCACTCCCTCAA
TTTCATCGTTGGAAGCCCCTTACTCACAGCAATATCATTCCCGGTATCGG
GGCAAACCAGCTACTGGTGTCAGTCAATCCTAGTGGTACGGTCGGCACTA
CACCAGCGAAAAAGAAATCTCTCACGTGCTGATCGTCTACAGCTTGGTAT
TCATTGGTGCACACCAGCAACAACCTACCAATCACCGCGATGGTTGCGCC
CAAGAAGTGCAACCAGGAGATTGAACATGTCGCGGAGGAGACTTTCCCCG
GGTCACAACGGTTCGAGCACCACCGGACAAAATAAGTTCGACACTCGCTG
CCAGCGTGTGTGTGAGACAGCGGCGACAGCTTTCGTAATTTGTGGATGTT
GGGGTCTCCAGCTATATTGTGTATGTGTTTTGTGGCTCGGTTTGGCAGGC
GCGCGGACGGAGACGGTGCTACAACCCTCGGAAGCTTACCAGGAATATGC
CAGGGAATAACGTGTGCACCAGCATTTGTTTGCACATCTACAACCAGATG
ATTCGCGTGGTACAGCAGCGGACGAAATTTCAACACAGAAGTTGGTGGGA
ATTTGGTTCGGGAAGCCGGAGGTTTTCAAGTCAACGACCAAACTCACGTA
TATGTCGTGCGCCTTCCGTTTGCTTACACGCACGCTCTCCGCCCTTCATC
TCTGTCCAGCCGGCAGCGGCGGCGATCTCGACCTTAAGGAGGCCGCTCCA
CCACGCCGATCGTCTCGAGCAGCAGCAGCAGCATCAACGTTGGCGCCGCT
ACGGCAAACAGCGGCAACAGCGCTGGCCGCGGTCCTGATGCTCGCTTCCA
CCGAACAGGATATCATGACCGCTATGATGGGGCTGGATCCCTCCCTGGCG
ACGTCCACCGCAGCGCAACCCACCATGACCGTACCCAAAGAGGAGGGGCC
ACAGGCAGGGGGTGGAAAGGCGCCGTCGATGGGTTCGATAGATGTACGGG
GTCAGGGGGACGCTCTCGGGGAGATCGCCGGGGGGCCCGGCGGCGGCTTC
AAGAACGGGCGGCTTATGGTGGACCAGGATTCCGACCTGGCCATGATGCT
GGGCAAGAAGATGAAGACACCGGACGCCGACCCGTTGACGCACTGATTAT
TTTTTGTCTTGGTGTCTGTGTGGAGAGCCTGGGTGAAGTGTCTTGATTTT
TGGTGTGGAAGAGCCTGTGGCCAAAGGCCGCGTACTCCGGGCGATTTTGA
CGGAGTACGCGGCTGGGTTTATTTTCACCCTTGCAGCTTTGCTGCGTCGT
CTCCGTTGGGCATCGTGCCTTTGATATTACGTCTGCATCACGCTGATGTT
ACGGATCCTAGTATCTCCATGCGCATGTCTAGCGTTCTTTGGGAAGGTAG
ACCTCGGCTATGGATAATGATCGGTGAAACAAGGGGTACACCAACGGGGA
TGCTTTCAGTCTTGGGCCTACCAGTC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1564:21970..24795+ >mRNA_E-siliculosus-1a_F_contig1564.3259.1 ID=mRNA_E-siliculosus-1a_F_contig1564.3259.1|Name=mRNA_E-siliculosus-1a_F_contig1564.3259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1410bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1564:21970..24795+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGAGTGCTTGTGGCTTCAGTTGTCGGGACAGCGTTTTTGCTGGGAGC
AGAAGATGAGAGTGCTTGTGGCTTCAGTTGTCGGGACAGCGTTTTTGCTG
GGAGCAGAAGACTGCCGCATCATCACAGAGGCGTTCGCACACCCACCTGT
TCCGCGAACGGGAGCTTCGGGACGAAGTACTGCTGGAAATAACCGCGGCC
TGGCGGTTATCCGGAGACGCGCACCGGCGGGTTTCTTCCGCTCCGGTACG
GCGGTCTCATCGTCCCGATCCGAGGGGGAAGCCGGGGAGGAGAGGCAACG
GAGGCGGCCGACGCATCGAGGTGACTGCCGCATCATCACAGAGGCGTTCG
CACACCCACCTGTTCCGCGAACGGGAGCTTCGGGACGAAGTACTGCTGGA
AATAACCGCGGCCTGGCGGTTATCCGGAGACGCGCACCGGCGGGTTTCTT
CCGCTCCGGTACGGCGGTCTCATCGTCCCGATCCGAGGGGGAAGCCGGGG
AGGAGAGGCAACGGAGGCGGCCGACGCATCGAGGTGCCGGCAGCGGCGGC
GATCTCGACCTTAAGGAGGCCGCTCCACCACGCCGATCGTCTCGAGCAGC
AGCAGCAGCATCAACGTTGGCGCCGCTACGGCAAACAGCGGCAACAGCGC
TGGCCGCGGTCCTGATGCTCGCTTCCACCGAACAGGATATCATGACCGCT
ATGATGGGGCTGGATCCCTCCCTGGCGACGTCCACCGCAGCGCAACCCAC
CATGACCGTACCCAAAGAGGAGGGGCCACAGGCAGGGGGTGGAAAGGCGC
CGTCGATGGGTTCGATAGATGTACGGGGTCAGGGGGACGCTCTCGGGGAG
ATCGCCGGGGGGCCCGGCGGCGGCTTCAAGAACGGGCGGCTTATGGTGGA
CCAGGATTCCGACCTGGCCATGATGCTGGGCAAGAAGATGAAGACACCGG
ACGCCGACCCGTTGACGCACTGACCGGCAGCGGCGGCGATCTCGACCTTA
AGGAGGCCGCTCCACCACGCCGATCGTCTCGAGCAGCAGCAGCAGCATCA
ACGTTGGCGCCGCTACGGCAAACAGCGGCAACAGCGCTGGCCGCGGTCCT
GATGCTCGCTTCCACCGAACAGGATATCATGACCGCTATGATGGGGCTGG
ATCCCTCCCTGGCGACGTCCACCGCAGCGCAACCCACCATGACCGTACCC
AAAGAGGAGGGGCCACAGGCAGGGGGTGGAAAGGCGCCGTCGATGGGTTC
GATAGATGTACGGGGTCAGGGGGACGCTCTCGGGGAGATCGCCGGGGGGC
CCGGCGGCGGCTTCAAGAACGGGCGGCTTATGGTGGACCAGGATTCCGAC
CTGGCCATGATGCTGGGCAAGAAGATGAAGACACCGGACGCCGACCCGTT
GACGCACTGA back to top
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