mRNA_E-siliculosus-1a_F_contig1558.3222.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1558.3222.1
Unique NamemRNA_E-siliculosus-1a_F_contig1558.3222.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1558.3222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1558contigE-siliculosus-1a_F_contig1558:4207..5153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size231
Model size947
Exons1
Ec32 orthologEc-27_002060.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1558.3222.1prot_E-siliculosus-1a_F_contig1558.3222.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1558 4806..5036 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928069.9119897-UTR-E-siliculosus-1a_F_contig1558:4206..48051622928069.9119897-UTR-E-siliculosus-1a_F_contig1558:4206..4805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1558 4207..4805 +
1696318794.1771796-UTR-E-siliculosus-1a_F_contig1558:4206..48051696318794.1771796-UTR-E-siliculosus-1a_F_contig1558:4206..4805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1558 4207..4805 +
1622928069.9430356-UTR-E-siliculosus-1a_F_contig1558:5036..51531622928069.9430356-UTR-E-siliculosus-1a_F_contig1558:5036..5153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1558 5037..5153 +
1696318794.196531-UTR-E-siliculosus-1a_F_contig1558:5036..51531696318794.196531-UTR-E-siliculosus-1a_F_contig1558:5036..5153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1558 5037..5153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928069.9248621-CDS-E-siliculosus-1a_F_contig1558:4805..50361622928069.9248621-CDS-E-siliculosus-1a_F_contig1558:4805..5036Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1558 4806..5036 +
1696318794.1867561-CDS-E-siliculosus-1a_F_contig1558:4805..50361696318794.1867561-CDS-E-siliculosus-1a_F_contig1558:4805..5036Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1558 4806..5036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1558.3222.1

>prot_E-siliculosus-1a_F_contig1558.3222.1 ID=prot_E-siliculosus-1a_F_contig1558.3222.1|Name=mRNA_E-siliculosus-1a_F_contig1558.3222.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=77bp
MLLLLASSTIYAMVFSASATVCFPRRWSFLQALLILSLSLSLSLVLVLVP
VLVTHLPAVPPAALVADCSRLNLNED*
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mRNA from alignment at E-siliculosus-1a_F_contig1558:4207..5153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1558.3222.1 ID=mRNA_E-siliculosus-1a_F_contig1558.3222.1|Name=mRNA_E-siliculosus-1a_F_contig1558.3222.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=947bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1558:4207..5153+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TAAGCTCGATTCCCCTTGCTCTGCGGTGGGTTGAAGCCCGACCCCCGCCA
GCACCCCTCCTCCGCTCCCTTGCCTTTGCTGCCCCGCTGCTGCTGTCATT
TTCGCTGCTGCCGTGCTCTTCCTCGAGATGTAGCCCGGTCGATTGCCGCT
CGCACCCCCTCCGGGTCTCCCCGCTCGGGCCGCAGCCCCCGGCCTGGCGG
CGCTTGAAGTGCCTGCCTTTGCCTCCGCGGGCTTCTGTTCCCCACGGCTT
GAAGGGCCTGCTGTTGCTGCTGCTGGTAAGGGAGAAGCTCTTGCACCGGT
GCTGGCACTCCCGTTCGTGCCGCTACTGCTGTTGCGATCCTCCGCCGCCG
AGCGCCGCCGCTCGCCCGGTCGCGGCCGCCGCTGGGGCCGGGGGCTCGCT
TGGCCCCCGCCGTCCTCGCTGGAGGAGCTAGGCGGGAGCGTGCTCCTGGA
GGACGAGCTGCGAGACATGGCAGAGCCGCCGACACCGCAGTTGCTGCCCC
CAGGCTGATCGGTGTTGCTCGCGGCGGCTGCTGCGACGGCTTTGCCTACT
CCCGCGGGTGCCTCCGCCCGTCGTCGTTGTGGTGGTGCCGCTGTTGCTGA
TGTTGCTGTTGCTGGCGAGTTCGACGATCTATGCCATGGTATTCTCTGCT
TCGGCGACGGTCTGCTTCCCCCGTCGCTGGAGTTTTTTACAGGCGTTGCT
GATACTGTCGCTGTCGCTGTCGCTGTCGCTTGTGCTGGTGCTGGTGCCGG
TGCTGGTGACCCACCTGCCGGCGGTGCCACCGGCGGCGCTGGTGGCGGAT
TGCTCCCGTCTGAACTTGAACGAGGACTAGGACTGATCGAGCGACGCCAG
GGCATATGCGGATGCATGGTACGCTATCCCTCAGGCGGCTGTCTACAACA
GCTTTGCAAGTAAACACCCGCCAGACACCCGCGCTCTCTCTGCTGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1558:4207..5153+

>mRNA_E-siliculosus-1a_F_contig1558.3222.1 ID=mRNA_E-siliculosus-1a_F_contig1558.3222.1|Name=mRNA_E-siliculosus-1a_F_contig1558.3222.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1558:4207..5153+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTGCTGTTGCTGGCGAGTTCGACGATCTATGCCATGGTATTCTCTGC
TTCGGCGACGGTCTGCTTCCCCCGTCGCTGGAGTTTTTTACAGGCGTTGC
TGATACTGTCGCTGTCGCTGTCGCTGTCGCTTGTGCTGGTGCTGGTGCCG
GTGCTGGTGACCCACCTGCCGGCGGTGCCACCGGCGGCGCTGGTGGCGGA
TTGCTCCCGTCTGAACTTGAACGAGGACTAGATGTTGCTGTTGCTGGCGA
GTTCGACGATCTATGCCATGGTATTCTCTGCTTCGGCGACGGTCTGCTTC
CCCCGTCGCTGGAGTTTTTTACAGGCGTTGCTGATACTGTCGCTGTCGCT
GTCGCTGTCGCTTGTGCTGGTGCTGGTGCCGGTGCTGGTGACCCACCTGC
CGGCGGTGCCACCGGCGGCGCTGGTGGCGGATTGCTCCCGTCTGAACTTG
AACGAGGACTAG
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