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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1556.3215.1 vs. uniprot
Match: A0A6H5KFR7_9PHAE (DA1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR7_9PHAE) HSP 1 Score: 317 bits (813), Expect = 7.530e-102 Identity = 209/232 (90.09%), Postives = 209/232 (90.09%), Query Frame = 1
Query: 55 MGTMKVFLENIRSMARSPTQYNRTQQERIASQEAEFEAAVAASLAEAGGCGYPVLPASGGAGAGGAQGDEAAAIAAAIGASLDMHEAAXXXXXXXXXXXXXXXXXXXXXGKKGGAHPDPAPFAGGFDGTHDSQDLAFLSDVPLLPPAXXXXXXXXXXXXXXXXXXXXXXXEDVRKGRGAWSGGAMFGGSLVPRQPRAPSSGRGRAAEDEALARRLQDQWLSENAADRGGGGF 750
MGTMKVFLENIRSMARSPTQYNRTQQERIASQEAEFEAAVAASL EAGG GYPVLPASGGAGAGG QGDEAAAIAAAIGASLDMHEAA XXXXXX GKKGGAHPDPAPFAGGFDGTH SQDLAFLSDVPLLPPAXXXXXXXXXXXXXXXXXXXXX EDVRKGRGAWSGGAMFGGSLVPRQPRAPSSGRGRAAEDEALARRLQDQWLSENAA GGGGF
Sbjct: 1 MGTMKVFLENIRSMARSPTQYNRTQQERIASQEAEFEAAVAASLVEAGGYGYPVLPASGGAGAGGTQGDEAAAIAAAIGASLDMHEAADAGSQGNGASXXXXXXR----GKKGGAHPDPAPFAGGFDGTHGSQDLAFLSDVPLLPPAXXXXXXXXXXXXXXXXXXXXXSGEDVRKGRGAWSGGAMFGGSLVPRQPRAPSSGRGRAAEDEALARRLQDQWLSENAAGPGGGGF 228
BLAST of mRNA_E-siliculosus-1a_F_contig1556.3215.1 vs. uniprot
Match: D7G9F7_ECTSI (DA1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F7_ECTSI) HSP 1 Score: 221 bits (562), Expect = 5.920e-65 Identity = 157/234 (67.09%), Postives = 159/234 (67.95%), Query Frame = 1
Query: 55 MGTMKVFLENIRSMARSPTQYNRTQQERIASQEAEFEAAVAASLAEAGGCGYPVLPASGGAGAGGAQGDEAAAIAAAIGASLDMHEAAXXXXXXXXXXXXXXXXXXXXXGKKGGAHPDPAPFAGGFDGTHDSQDLAFLSDVPLLPPAXXXXXXXXXXXXXXXXXXXXXXXEDVRKGRGAWSGGAMFGGSLVPRQPRAPSSGRGRAAEDEALARRLQDQWLSENAADRGGGGFGG 756
MGTMKVFLENIRSMARSPTQYNRTQQERIASQEAEFEAAVAASL EAGG G+PVLPASGGAGAG AQGDEAAAIAAAIGASLDMHE XXXXXXXXXXXXXXXX E VRKGRGAWSGGAMFGGSLVPRQPRAPSSGRGR EDEALARRLQ+QWL ENAADRGGGGFGG
Sbjct: 1 MGTMKVFLENIRSMARSPTQYNRTQQERIASQEAEFEAAVAASLVEAGGSGFPVLPASGGAGAGSAQGDEAAAIAAAIGASLDMHETGRGXXXXXXXXXXXXXXXX----------------------------------------------------------------EGVRKGRGAWSGGAMFGGSLVPRQPRAPSSGRGRTVEDEALARRLQEQWLLENAADRGGGGFGG 170
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 0 |
| Stop | 0 |
| Cds size | 756 |
| Model size | 758 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko03029 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | O |
| EggNOG OGs | KOG1703@1,KOG1703@2759 |
| EggNOG free text desc. | actinin binding |
| GOs | GO:0000003,GO:0000131,GO:0000278,GO:0000281,GO:0000746,GO:0000747,GO:0000755,GO:0000910,GO:0000917,GO:0003006,GO:0003674,GO:0003824,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0006109,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007049,GO:0007275,GO:0008047,GO:0008150,GO:0008152,GO:0008233,GO:0008285,GO:0008360,GO:0009266,GO:0009272,GO:0009409,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009908,GO:0009966,GO:0009968,GO:0009987,GO:0010087,GO:0010088,GO:0010154,GO:0010556,GO:0010646,GO:0010648,GO:0010675,GO:0010962,GO:0010981,GO:0016020,GO:0016043,GO:0016787,GO:0019222,GO:0019538,GO:0019904,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022622,GO:0023051,GO:0023057,GO:0030016,GO:0030017,GO:0030029,GO:0030036,GO:0030234,GO:0030427,GO:0030695,GO:0031323,GO:0031326,GO:0031430,GO:0031672,GO:0032182,GO:0032501,GO:0032502,GO:0032505,GO:0032506,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0032952,GO:0032953,GO:0032995,GO:0035023,GO:0035024,GO:0035670,GO:0040008,GO:0042127,GO:0042546,GO:0042995,GO:0043085,GO:0043087,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043292,GO:0043332,GO:0043547,GO:0044085,GO:0044087,GO:0044093,GO:0044238,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0045926,GO:0046578,GO:0046580,GO:0046620,GO:0046621,GO:0048316,GO:0048317,GO:0048364,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048444,GO:0048445,GO:0048467,GO:0048481,GO:0048482,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048638,GO:0048640,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051093,GO:0051094,GO:0051128,GO:0051179,GO:0051239,GO:0051240,GO:0051241,GO:0051286,GO:0051301,GO:0051336,GO:0051345,GO:0051641,GO:0051666,GO:0051704,GO:0055120,GO:0060237,GO:0060255,GO:0060589,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0080090,GO:0090036,GO:0090038,GO:0090334,GO:0090529,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0098772,GO:0099080,GO:0099081,GO:0099402,GO:0099512,GO:0120025,GO:0120038,GO:0140096,GO:1900055,GO:1900057,GO:1901564,GO:1902410,GO:1902531,GO:1902532,GO:1903047,GO:1903338,GO:1905392,GO:1905623,GO:2000024,GO:2000026,GO:2000112 |
| KEGG ko | ko:K17964 |
| Preferred name | rga1 |
| Seed eggNOG ortholog | 2880.D7G9F7 |
| Seed ortholog evalue | 1.4e-56 |
| Seed ortholog score | 226.5 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1556.3215.1 >prot_E-siliculosus-1a_F_contig1556.3215.1 ID=prot_E-siliculosus-1a_F_contig1556.3215.1|Name=mRNA_E-siliculosus-1a_F_contig1556.3215.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=252bp
GQSATHARLHQLDAPNLKMGTMKVFLENIRSMARSPTQYNRTQQERIASQ EAEFEAAVAASLAEAGGCGYPVLPASGGAGAGGAQGDEAAAIAAAIGASL DMHEAAAAGSQGNGASSSSGGGGGGGRGKKGGAHPDPAPFAGGFDGTHDS QDLAFLSDVPLLPPAPAPAQTGRGGGGAGAAADAGGGGEDVRKGRGAWSG GAMFGGSLVPRQPRAPSSGRGRAAEDEALARRLQDQWLSENAADRGGGGF GG back to topmRNA from alignment at E-siliculosus-1a_F_contig1556:15539..20051+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1556.3215.1 ID=mRNA_E-siliculosus-1a_F_contig1556.3215.1|Name=mRNA_E-siliculosus-1a_F_contig1556.3215.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4513bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1556:15539..20051+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) GGTCAGTCAGCCACACACGCCCGTCTTCATCAGCTGGACGCGCCGAACTT
GAAGATGGGAACAATGAAGGTTTTCTTGGAGAACATCCGCAGCATGGCGC
GGAGCCCTACGCAATACAACCGGACTCAGCAGGAGAGAATTGTAAGAGAT
GTTATTTATACAACGTGATTTTTGGAACAAGAAGCGGAGTTCTGCAAGTA
GCAAGCAAACAGGCACTGCTGCTGCACCGCTTCAACCGCCAGGCAGCTTA
CTCCCGTTGTGAATCTTGAGGCTTTCCCGGAGCTCTGAAGCTCTTCGTTC
GTCGTGAGAGCTCACCAAGCTGTGAACCGTTGGTGCCGGCTTCACGCCCC
GCCGTGTTTGCCCCTTGCTGCCTTGCTGTGTGTGTCCTTTCGAACTCCGA
ACACCCAGCATTCATTCAGATCCAGAGGTGCCGTGTTTCATTGACATCAA
AGTCTCTGCAGATATTTAGTGTAAACAGCATGCGAACTTTCAACGATGGA
ATACCCCAGACCACCAGTGCTTGTTCCTCGCTCACCACACGCGCCCGGGG
TTGCCGTAACCCTGCAACCATGCACTGGCCTAGTTGTATTTCGGACCCGA
TGGTGTTCCTACATGTAGATCGACTCTGGCCCCTTATACATACCCCGTAT
CCGAAAAATTGTTCGCTTTTTCTGGTCTTTTTTCTTTCATGAATGTCAGT
CACTGCGGAATCCAAGCTCTCCTACAGATTACAGTAGTGATTTGCTCGGA
GTCTAGTCTACGATTACGAAGACGCTTCCAGTTTCTATTTCTACTCCAAA
TCAATCTCGGTGCTACACTGCATGTGCTTCGCGACGCTGTGTGCTGCGCT
CAGGCCTCTCAGGAAGCTGAGTTTGAAGCTGCGGTTGCCGCCTCCCTTGC
CGAAGCCGGTGGTTGTGGGTATCCGGTGCTGCCTGCATCAGGTAAGCCGC
ATTGGCTCAACAATAAGATCAAGATTGTTCTAAGAGCAACGGCGGTATTT
TCGAGCATCGGATCAGTTGTTTGCTTTTAAGATGTAAGAGTAGCAGGAGA
GAGAGAGAGAGAGAGAGAGGGAGGGCCTGGGCAGAGGTCTGCAAAAGATG
TTACAGCAGTACTGCAAGGGCAACCAACCGTCCTTCAACGTCTACCAACG
CCACAGGTGCGAAGCACGTAAGCTGTCATCGCCATCGCCACTACCGCCAT
CACCCACCAACAACAACACAATGTATTTAGTCCTAGACTATGTGCCATAT
GTCAAGTGCGGCATAATATCTGCTGTACAACAACTTTGCAAGCAGTTGCT
CATGTGTTGGCAAATGGCGAATGGGACAGAAAGAACACGGGCACTTTGAA
TCGTGCTGTAGGCTGTAGATTCATGTGTTGGAAGCGAAATGTGAGAGTTG
AGAACCCCAACCTAATAAAACATGTGGCAGGCAGTTTTCCCGTAGGAGGC
GGAGAGATCGCACCGTCTCTACTATCTAGACCGACTTCCAATTCCCGACT
GCTTCTCAACTAAGTGGGTGCGAGGTGCTACGATAAGAGCCCGATAATTC
CAGCCAGTAAATTCACGGTCTGTTGCTAGTCCCGATAATTGTACCGAAAG
CCTTCGACGAGATGCCCCCCAAACCAACATTTTTAGTGTTGGCACAAGCT
TGGTTTTTGAGTAGTGGAGCTTTCACATCGGTAAAGGGGGGGGGGGTGCC
GTCTCTTCGCCTTTTACGGTTACCCAACGACTGGCTGAGACAGGGAAGAG
GGAGTGTTGTTGCCGCGGAGGAACGGACGCGGAAAAACAATAGTAACGAA
TCGGAAGATAAAAAATAAAATAAATTTACTACACGAGGCGGTTGACGCAC
AACCACGCAACTCTTACAATGCACTTCTTTTTTTATGTATGTCTTCCCCA
AAAACAACGATACTGCACCTTAAAAAAATATCAAACCAGACACACTCTCA
TTGTCGTCTTGAAAAACCGGCCTGCTCTCTTGCTCAGTACCTTCTACTTG
TATTCACGCCCGTGCCGGCCCAACAGAAGCTGATTGCCTTCCGTGGCCAC
AGGCAAACTACGCCCAAAAGGGTTTATACGCACTTTTCGGATGTACCACA
CCCACTTTTCCGCAACACACAATAAAGAGGTCGTGTGTATTTTCTAAACA
CAGAGAAGACACGGCAGTCAGACGTCGCCCGTGATACGTGGAACAAAGGA
ATGAAGGGCCCATCGCTCCCGCTCTGCACACACACACGTGATTCCAAACA
AGACAAAACGAACAATAATCAAGAAAATGGCCGCTCAAAAGGACAGTTCA
CAACCGGATGAATCTGCTTGGAACCTACGGTTGTTCATGAACCAAACTAC
ATGCAGCTATGCTATCATACGCAGTAAACGATCAAACTGGTCGGCCTCAA
CTCGACATTTCGCCTATTGAGAAGACAATTCGGTCTTTTCGAGCGAGTGG
GGCGGAACCTCTTGGCGCACACTCGCTAGTCACGGACGTACATTTTTCTG
TTGTTGTTGATATGATTCCATCTCTATCCCAGAAAAGAGTCCACGATAGG
TTAGCAATGAAATCACAGCGTCAGCGGAGACTATCTGTATTTCTACGGTG
TCTCGAGCAGCACACGGCGATATCTCCCCTGTGGGCAACAGGCTCAACAA
GACAGAGTATTCAAGTTAACACATTCGGAGTGAGGAACGGAATACGGTGG
AAAGCTGCGCCGACAGCGGATAGCTTGCCACGAGTGTGCTGTTGCAAGTA
CATAGATAGGTTGATGCATGGACTGTGCTGTTGTAGAGGGTTTAAAAGTG
GGTTTTGATGGTCGCAGATTTCAACCCCGGGTAAGTTGACGTATTCTAGA
TACGCAGACCTTGTATCAGGAAAAATAGATATAACTAACCTTCCTTCTGC
ACCTTCCCAGCATAACATACAGATAGATGCACAAGACGGCTACCAAACTG
TCTTGTTGGGCCTGTTACCCACAGGGGAGATATCGCTGTGTGCTGCTCGG
GAAACCGTGGAAATACTGGTAGCTTTCTCTGACGCTATGAATTCATTGCT
CATCTTTCTTTAGACTCTGTTCCTAGATAGAGATGTGTTCGTTGGGTCAT
ATTTAAAAAATAAACAAGCACAGAAAGACTAGTTGTACCCGTTCGAGGTA
TAACCATAGTCGAACGGGATGTGTTGGAGTTTTCAGTGAGTGGAGGGAAA
CCGGCTAGAACTTTGTTTTTTTTAAATACGCGTGGTGGCAGCGGGATTGT
CGGAGAGTCAGTCGGTATCGCCCGTGAGACACGTCGCCGATCTCGCTCTC
CCCCCGCCCCCCTCGGTCTTGGTGCAAAACGTGTCCGCACTTACGTACAG
TATGTGTGTCGAAGCTGGAATCTTTTGGATTTGTTCGCTGCTTGCTCTTG
CTGGCTCTTCCGTTGTGTGTATCCAGATTTGTCTGTTTTCATGCGGTACG
TGTATAGTGCTCCCACGAAAGCTGCTGCCGCGTCCAGTGCCGTGTTTCTT
AAGTAAAGCTAGCGCTGCTACAACTGCCTCTGCTGCGCTCTTGCTTCGTG
CTGTGGCCTTTGTGTTCGCTGTCGTCAGTATTAACCTGCGTTCCCGGTTC
TCCTTTGATTGGTCCGGGTGCAGGCGGCGCCGGCGCCGGCGGCGCGCAAG
GCGACGAGGCCGCCGCCATCGCCGCCGCCATCGGAGCCTCGCTCGACATG
CACGAGGCCGCTGCTGCTGGCTCTCAGGGCAACGGCGCCAGCAGCAGCAG
CGGCGGCGGCGGCGGCGGCGGTCGCGGCAAGAAGGGCGGCGCCCACCCCG
ACCCAGCGCCGTTCGCGGGAGGCTTCGACGGCACCCACGACTCCCAAGAC
TTAGCGTTTCTGAGCGACGTCCCGTTGCTCCCGCCCGCCCCCGCTCCGGC
CCAGACAGGCAGGGGTGGTGGCGGTGCTGGCGCTGCTGCTGATGCTGGTG
GCGGTGGGGAAGACGTACGGAAAGGCCGGGGCGCGTGGAGCGGGGGCGCC
ATGTTTGGTGAGGCATGGCGTTCATCTGTCTGTGCGCAGCTTGTTTCGTT
ATTTGCTGTTGTGGTTTTGTGCCGTTGTGAGTTTCTTCCCCTAAGACCCG
GTACGGCCTCTACCCAACTGCCTCCGGAAACGGCGGCAACTGCGGGGCAG
CGGCGACAGCGGCAGCCACAACGGCAAAGGACTCCTGGCTCGTGACTCGC
CCCTCCAATTCCTACCTATCTTTTCTCTTGCCAACTCACAAACGTGACTT
ATCGACGACACTAGTAATGGTACCAGTTGTCCATTTTATTTTTCTGTCTT
TGTCCTTATTAAGAATCTCTAATCCGATACGTAAGCATACACAAACATGC
GCAACCTTTCGTCGGCAGGGGGATCGTTGGTGCCGCGCCAGCCACGGGCC
CCCTCCTCCGGTAGAGGGCGAGCGGCCGAGGACGAAGCGCTGGCCAGGCG
CCTGCAGGACCAGTGGCTCTCGGAAAATGCTGCGGACCGCGGCGGCGGCG
GTTTCGGCGGAGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1556:15539..20051+ >mRNA_E-siliculosus-1a_F_contig1556.3215.1 ID=mRNA_E-siliculosus-1a_F_contig1556.3215.1|Name=mRNA_E-siliculosus-1a_F_contig1556.3215.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1512bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1556:15539..20051+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) GGTCAGTCAGCCACACACGCCCGTCTTCATCAGCTGGACGCGCCGAACTT GAAGATGGGAACAATGAAGGTTTTCTTGGAGAACATCCGCAGCATGGCGC GGAGCCCTACGCAATACAACCGGACTCAGCAGGAGAGAATTGGTCAGTCA GCCACACACGCCCGTCTTCATCAGCTGGACGCGCCGAACTTGAAGATGGG AACAATGAAGGTTTTCTTGGAGAACATCCGCAGCATGGCGCGGAGCCCTA CGCAATACAACCGGACTCAGCAGGAGAGAATTGCCTCTCAGGAAGCTGAG TTTGAAGCTGCGGTTGCCGCCTCCCTTGCCGAAGCCGGTGGTTGTGGGTA TCCGGTGCTGCCTGCATCAGGCCTCTCAGGAAGCTGAGTTTGAAGCTGCG GTTGCCGCCTCCCTTGCCGAAGCCGGTGGTTGTGGGTATCCGGTGCTGCC TGCATCAGGCGGCGCCGGCGCCGGCGGCGCGCAAGGCGACGAGGCCGCCG CCATCGCCGCCGCCATCGGAGCCTCGCTCGACATGCACGAGGCCGCTGCT GCTGGCTCTCAGGGCAACGGCGCCAGCAGCAGCAGCGGCGGCGGCGGCGG CGGCGGTCGCGGCAAGAAGGGCGGCGCCCACCCCGACCCAGCGCCGTTCG CGGGAGGCTTCGACGGCACCCACGACTCCCAAGACTTAGCGTTTCTGAGC GACGTCCCGTTGCTCCCGCCCGCCCCCGCTCCGGCCCAGACAGGCAGGGG TGGTGGCGGTGCTGGCGCTGCTGCTGATGCTGGTGGCGGTGGGGAAGACG TACGGAAAGGCCGGGGCGCGTGGAGCGGGGGCGCCATGTTTGGCGGCGCC GGCGCCGGCGGCGCGCAAGGCGACGAGGCCGCCGCCATCGCCGCCGCCAT CGGAGCCTCGCTCGACATGCACGAGGCCGCTGCTGCTGGCTCTCAGGGCA ACGGCGCCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGTCGCGGCAAG AAGGGCGGCGCCCACCCCGACCCAGCGCCGTTCGCGGGAGGCTTCGACGG CACCCACGACTCCCAAGACTTAGCGTTTCTGAGCGACGTCCCGTTGCTCC CGCCCGCCCCCGCTCCGGCCCAGACAGGCAGGGGTGGTGGCGGTGCTGGC GCTGCTGCTGATGCTGGTGGCGGTGGGGAAGACGTACGGAAAGGCCGGGG CGCGTGGAGCGGGGGCGCCATGTTTGGGGGATCGTTGGTGCCGCGCCAGC CACGGGCCCCCTCCTCCGGTAGAGGGCGAGCGGCCGAGGACGAAGCGCTG GCCAGGCGCCTGCAGGACCAGTGGCTCTCGGAAAATGCTGCGGACCGCGG CGGCGGCGGTTTCGGCGGAGGGGATCGTTGGTGCCGCGCCAGCCACGGGC CCCCTCCTCCGGTAGAGGGCGAGCGGCCGAGGACGAAGCGCTGGCCAGGC GCCTGCAGGACCAGTGGCTCTCGGAAAATGCTGCGGACCGCGGCGGCGGC GGTTTCGGCGGA back to top
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