mRNA_E-siliculosus-1a_F_contig15546.3212.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15546.3212.1
Unique NamemRNA_E-siliculosus-1a_F_contig15546.3212.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15546.3212.1 vs. uniprot
Match: A0A6H5JFN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN8_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 4.690e-75
Identity = 205/240 (85.42%), Postives = 208/240 (86.67%), Query Frame = 2 
Query:    2 PVQGAGMPPGMMPGGATARSGSASAGSRAAPPSGLFASGGRDDLNEAILGRMGATRAGTGASSSSHSSGGVHRLGGFGGGASGSGSRACPGAQSLGAGGSAGGGVCDPGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----REELSTESREPREDGLRRSARNVKDVQVRRSSRIKEKDEKAAASRTTSGMGQXXXXXXXXXXXXXXXXXXSGKETKRARRGGGVAS 709
            PVQGAGMPPGMMP GATARSGSASAGS  APP G  ASGGR D+NEAILGR GATRAGTGASSSSHSSGGVHRLGGFGGGASGSGSRACPGAQSLGAGGSA GGVC PGAGG               XXXXXXXXXXXXXXXXXXXXXXX    REELSTESREPREDGLRRSARNVKDVQVRRSSRIKE+DEKAAASRTTSGMGQXXXXXXXXXXXXXXXXXX GK+ KRARRGGGV S
Sbjct:  128 PVQGAGMPPGMMPSGATARSGSASAGSCVAPPRGPSASGGRHDINEAILGRRGATRAGTGASSSSHSSGGVHRLGGFGGGASGSGSRACPGAQSLGAGGSAVGGVCHPGAGGAGSVAGVMGAGVVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXREELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAASRTTSGMGQXXXXXXXXXXXXXXXXXXXGKQAKRARRGGGVES 367
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BLAST of mRNA_E-siliculosus-1a_F_contig15546.3212.1 vs. uniprot
Match: D8LKR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR7_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.400e-48
Identity = 164/210 (78.10%), Postives = 166/210 (79.05%), Query Frame = 2 
Query:   95 PSGLFASGGRDDLNEAILGRMGATRAGTGASSSSHSSGGVHRLGGFGGGASGSGSRACPGAQSLGAGGSAGGGVCDPGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----REELSTESREPREDGLRRSARNVKDVQVRRSSRIKEKDEKAAASRTTSGMGQXXXXXXXXXXXXXXXXXXSGKETKRARRGGGVAS 709
            P G  ASG R D+NEAILGR GATRAGTGASSSS SSGGVHRLGGFGGGASGSGSRAC GAQSL         VCD GA G           XXXXXXXXXXXXXXXXXXXXXXXXXXX     REELSTESREPREDGLRRSARNVKDVQVRRSSRIKE+DEKAAA RTTSGMGQ XXXXXXXXXXX      SGKETKRARRGGGV S
Sbjct:   41 PRGPSASGSRHDINEAILGRKGATRAGTGASSSSRSSGGVHRLGGFGGGASGSGSRACLGAQSLXXXXXXXXXVCDLGARGAGSDAGVVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAALRTTSGMGQAXXXXXXXXXXXVAAPESSGKETKRARRGGGVES 250
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15546.3212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFN8_9PHAE4.690e-7585.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKR7_ECTSI1.400e-4878.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15546contigE-siliculosus-1a_F_contig15546:86..935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size849
Model size852
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928067.7723436-CDS-E-siliculosus-1a_F_contig15546:85..9341622928067.7723436-CDS-E-siliculosus-1a_F_contig15546:85..934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15546 86..934 +
1696318793.2815723-CDS-E-siliculosus-1a_F_contig15546:85..9341696318793.2815723-CDS-E-siliculosus-1a_F_contig15546:85..934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15546 86..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15546.3212.1prot_E-siliculosus-1a_F_contig15546.3212.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15546 86..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15546.3212.1

>prot_E-siliculosus-1a_F_contig15546.3212.1 ID=prot_E-siliculosus-1a_F_contig15546.3212.1|Name=mRNA_E-siliculosus-1a_F_contig15546.3212.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=283bp
AGSGSGDAAWDDAGRSDSEVGFGVGWIARSTTERAVCIWRQGRSQRSDLG
AHGSDEGRDGSLELKPQLRGCTPPRRLRWRCKRERFTSVPRGTVARRWGF
RGWRGVRPGSRRCGERRRRGGGRRRRRRRGGAESGGGRRIRVREVQDQAA
QGGALHGVPRAARGRPSAQRAQCEGCAGAEELAHQGEGREGRRVEDDERH
GAGGGCREEAIGSGGSGGRIVRQGDQEGPPRRRGGERREEAIGSGGSGGR
IVRPSDQEGPPRPQGGEGGSFGRRGGSAGRGGG
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mRNA from alignment at E-siliculosus-1a_F_contig15546:86..935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15546.3212.1 ID=mRNA_E-siliculosus-1a_F_contig15546.3212.1|Name=mRNA_E-siliculosus-1a_F_contig15546.3212.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=850bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15546:86..935+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGGTTCAGGGAGCGGGGATGCCGCCTGGGATGATGCCGGGCGGAGCGA
CAGCGAGGTCGGGTTCGGCGTCGGCTGGATCGCGCGCAGCACCACCGAGC
GGGCTGTTTGCATCTGGCGGCAGGGACGATCTCAACGAAGCGATCTTGGG
GCGCATGGGAGCGACGAGGGCCGGGACGGGAGCCTCGAGCTCAAGCCACA
GCTCCGGGGGTGTACACCGCCTCGGCGGCTTCGGTGGCGGTGCAAGCGGG
AGCGGTTCACGAGCGTGCCCCGGGGCACAGTCGCTAGGCGCTGGGGGTTC
CGCGGGTGGAGGGGTGTGCGACCCGGGAGCAGGCGGTGCGGGGAGCGGCG
CCGGCGTGGTGGGGGCCGGAGGAGGAGGAGGAGGAGGGGCGGGGCAGAGT
CAGGAGGGGGGCGCAGGATCAGGGTCAGGGAGGTCCAGGACCAAGCGGCG
CAGGGAGGAGCTCTCCACGGAGTCCCGCGAGCCGCGCGAGGACGGCCTTC
GGCGCAGCGCGCGCAATGTGAAGGATGTGCAGGTGCGGAGGAGCTCGCGC
ATCAAGGAGAAGGACGAGAAGGCCGCCGCGTCGAGGACGACGAGCGGCAT
GGGGCAGGCGGCGGCTGCCGGGAAGAAGCGATCGGCAGCGGCGGTAGCGG
CGGCAGAATCGTCCGGCAAGGAGACCAAGAGGGCCCGCCGCGGCGGAGGG
GTGGCGAGCGGAGGGAGGAAGCGATCGGCAGCGGCGGTAGCGGCGGCAGA
ATCGTCCGGCCCAGTGACCAAGAGGGCCCGCCGCGGCCGCAGGGTGGAGA
GGGAGGCAGCTTCGGGAGGAGGGGCGGGAGCGCCGGCCGCGGTGGCGGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15546:86..935+

>mRNA_E-siliculosus-1a_F_contig15546.3212.1 ID=mRNA_E-siliculosus-1a_F_contig15546.3212.1|Name=mRNA_E-siliculosus-1a_F_contig15546.3212.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1698bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15546:86..935+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGGTTCAGGGAGCGGGGATGCCGCCTGGGATGATGCCGGGCGGAGCGA
CAGCGAGGTCGGGTTCGGCGTCGGCTGGATCGCGCGCAGCACCACCGAGC
GGGCTGTTTGCATCTGGCGGCAGGGACGATCTCAACGAAGCGATCTTGGG
GCGCATGGGAGCGACGAGGGCCGGGACGGGAGCCTCGAGCTCAAGCCACA
GCTCCGGGGGTGTACACCGCCTCGGCGGCTTCGGTGGCGGTGCAAGCGGG
AGCGGTTCACGAGCGTGCCCCGGGGCACAGTCGCTAGGCGCTGGGGGTTC
CGCGGGTGGAGGGGTGTGCGACCCGGGAGCAGGCGGTGCGGGGAGCGGCG
CCGGCGTGGTGGGGGCCGGAGGAGGAGGAGGAGGAGGGGCGGGGCAGAGT
CAGGAGGGGGGCGCAGGATCAGGGTCAGGGAGGTCCAGGACCAAGCGGCG
CAGGGAGGAGCTCTCCACGGAGTCCCGCGAGCCGCGCGAGGACGGCCTTC
GGCGCAGCGCGCGCAATGTGAAGGATGTGCAGGTGCGGAGGAGCTCGCGC
ATCAAGGAGAAGGACGAGAAGGCCGCCGCGTCGAGGACGACGAGCGGCAT
GGGGCAGGCGGCGGCTGCCGGGAAGAAGCGATCGGCAGCGGCGGTAGCGG
CGGCAGAATCGTCCGGCAAGGAGACCAAGAGGGCCCGCCGCGGCGGAGGG
GTGGCGAGCGGAGGGAGGAAGCGATCGGCAGCGGCGGTAGCGGCGGCAGA
ATCGTCCGGCCCAGTGACCAAGAGGGCCCGCCGCGGCCGCAGGGTGGAGA
GGGAGGCAGCTTCGGGAGGAGGGGCGGGAGCGCCGGCCGCGGTGGCGGCG
CCGGTTCAGGGAGCGGGGATGCCGCCTGGGATGATGCCGGGCGGAGCGAC
AGCGAGGTCGGGTTCGGCGTCGGCTGGATCGCGCGCAGCACCACCGAGCG
GGCTGTTTGCATCTGGCGGCAGGGACGATCTCAACGAAGCGATCTTGGGG
CGCATGGGAGCGACGAGGGCCGGGACGGGAGCCTCGAGCTCAAGCCACAG
CTCCGGGGGTGTACACCGCCTCGGCGGCTTCGGTGGCGGTGCAAGCGGGA
GCGGTTCACGAGCGTGCCCCGGGGCACAGTCGCTAGGCGCTGGGGGTTCC
GCGGGTGGAGGGGTGTGCGACCCGGGAGCAGGCGGTGCGGGGAGCGGCGC
CGGCGTGGTGGGGGCCGGAGGAGGAGGAGGAGGAGGGGCGGGGCAGAGTC
AGGAGGGGGGCGCAGGATCAGGGTCAGGGAGGTCCAGGACCAAGCGGCGC
AGGGAGGAGCTCTCCACGGAGTCCCGCGAGCCGCGCGAGGACGGCCTTCG
GCGCAGCGCGCGCAATGTGAAGGATGTGCAGGTGCGGAGGAGCTCGCGCA
TCAAGGAGAAGGACGAGAAGGCCGCCGCGTCGAGGACGACGAGCGGCATG
GGGCAGGCGGCGGCTGCCGGGAAGAAGCGATCGGCAGCGGCGGTAGCGGC
GGCAGAATCGTCCGGCAAGGAGACCAAGAGGGCCCGCCGCGGCGGAGGGG
TGGCGAGCGGAGGGAGGAAGCGATCGGCAGCGGCGGTAGCGGCGGCAGAA
TCGTCCGGCCCAGTGACCAAGAGGGCCCGCCGCGGCCGCAGGGTGGAGAG
GGAGGCAGCTTCGGGAGGAGGGGCGGGAGCGCCGGCCGCGGTGGCGGC
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