mRNA_E-siliculosus-1a_F_contig15525.3201.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15525.3201.1
Unique NamemRNA_E-siliculosus-1a_F_contig15525.3201.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15525.3201.1 vs. uniprot
Match: D7FYN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN2_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 7.500e-29
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 GEVALGSGWSWITHGVISLQRRMQVAESELSRRAVAQDDGGLRDTAQTEESTASAMGRCNGNTVMHEV 204
            GEVALGSGWSWIT GV SLQRRMQVAESELSRRAVAQDDGGLRD AQTEE + SA+  CNGNTVMHEV
Sbjct: 1067 GEVALGSGWSWITRGVTSLQRRMQVAESELSRRAVAQDDGGLRDRAQTEERSTSAVVECNGNTVMHEV 1134
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15525.3201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYN2_ECTSI7.500e-2986.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15525contigE-siliculosus-1a_F_contig15525:383..941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size219
Model size221
Exons2
Ec32 orthologEc-17_000050.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.780985-CDS-E-siliculosus-1a_F_contig15525:382..5031622928065.780985-CDS-E-siliculosus-1a_F_contig15525:382..503Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15525 383..503 -
1696318792.9690547-CDS-E-siliculosus-1a_F_contig15525:382..5031696318792.9690547-CDS-E-siliculosus-1a_F_contig15525:382..503Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15525 383..503 -
1622928065.7917433-CDS-E-siliculosus-1a_F_contig15525:843..9411622928065.7917433-CDS-E-siliculosus-1a_F_contig15525:843..941Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15525 844..941 -
1696318792.9767675-CDS-E-siliculosus-1a_F_contig15525:843..9411696318792.9767675-CDS-E-siliculosus-1a_F_contig15525:843..941Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15525 844..941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15525.3201.1prot_E-siliculosus-1a_F_contig15525.3201.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15525 383..941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15525.3201.1

>prot_E-siliculosus-1a_F_contig15525.3201.1 ID=prot_E-siliculosus-1a_F_contig15525.3201.1|Name=mRNA_E-siliculosus-1a_F_contig15525.3201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp
GEVALGSGWSWITHGVISLQRRMQVAESELSRRAVAQDDGGLRDTAQTEE
STASAMGRCNGNTVMHEVRSSG*
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mRNA from alignment at E-siliculosus-1a_F_contig15525:383..941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15525.3201.1 ID=mRNA_E-siliculosus-1a_F_contig15525.3201.1|Name=mRNA_E-siliculosus-1a_F_contig15525.3201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=559bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15525:383..941- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGAGGTTGCCCTCGGTTCAGGGTGGAGCTGGATCACCCATGGCGTCAT
CAGCCTGCAGCGTCGAATGCAAGTTGCAGAATCGGAGCTTTCGCGAAGGT
GCGCACCGTGTGTAACGGAACCAACACCCTTGATGTAAATCTACAGCCGG
TGCTAGGGGCAGACGCACCCAAGCAAGTATGTCTCACATGGTCTGGGAAC
GAGGGTGACTACTGATGCTGCAGGGAATGGCGCATTTATTCCGCTACAAG
ACCGTGCAAGAGACCCTCACTTTGATACCTTTGCAACTACCGCGTTCGGT
GGTTGCATGAGATACACCACACGGTTAGAGATCAAGTGTCGTTTCAGCGT
CGCCCATACGCGACGGCATGCAACACTGTTCCTGTGGACACGTGTGCTCA
ACAGATTATTTTCCCGTTCCGGATGCTGTGTTGCGCAGGGCGGTAGCCCA
AGACGATGGCGGTCTTCGTGACACAGCACAGACGGAAGAAAGCACAGCAT
CAGCAATGGGCCGATGTAATGGAAACACAGTGATGCATGAGGTGCGTAGC
TCGGGCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15525:383..941-

>mRNA_E-siliculosus-1a_F_contig15525.3201.1 ID=mRNA_E-siliculosus-1a_F_contig15525.3201.1|Name=mRNA_E-siliculosus-1a_F_contig15525.3201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15525:383..941- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGAGGTTGCCCTCGGTTCAGGGTGGAGCTGGATCACCCATGGCGTCAT
CAGCCTGCAGCGTCGAATGCAAGTTGCAGAATCGGAGCTTTCGCGAAGGG
AGAGGTTGCCCTCGGTTCAGGGTGGAGCTGGATCACCCATGGCGTCATCA
GCCTGCAGCGTCGAATGCAAGTTGCAGAATCGGAGCTTTCGCGAAGGGCG
GTAGCCCAAGACGATGGCGGTCTTCGTGACACAGCACAGACGGAAGAAAG
CACAGCATCAGCAATGGGCCGATGTAATGGAAACACAGTGATGCATGAGG
TGCGTAGCTCGGGCTAGGGCGGTAGCCCAAGACGATGGCGGTCTTCGTGA
CACAGCACAGACGGAAGAAAGCACAGCATCAGCAATGGGCCGATGTAATG
GAAACACAGTGATGCATGAGGTGCGTAGCTCGGGCTAG
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