mRNA_E-siliculosus-1a_F_contig15524.3200.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15524.3200.1
Unique NamemRNA_E-siliculosus-1a_F_contig15524.3200.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15524.3200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15524contigE-siliculosus-1a_F_contig15524:251..878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size315
Model size628
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15524.3200.1prot_E-siliculosus-1a_F_contig15524.3200.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15524 512..826 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.7172487-UTR-E-siliculosus-1a_F_contig15524:250..5111622928065.7172487-UTR-E-siliculosus-1a_F_contig15524:250..511Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15524 251..511 +
1696318792.9462147-UTR-E-siliculosus-1a_F_contig15524:250..5111696318792.9462147-UTR-E-siliculosus-1a_F_contig15524:250..511Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15524 251..511 +
1622928065.7451887-UTR-E-siliculosus-1a_F_contig15524:826..8781622928065.7451887-UTR-E-siliculosus-1a_F_contig15524:826..878Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15524 827..878 +
1696318792.9611044-UTR-E-siliculosus-1a_F_contig15524:826..8781696318792.9611044-UTR-E-siliculosus-1a_F_contig15524:826..878Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15524 827..878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928065.7323966-CDS-E-siliculosus-1a_F_contig15524:511..8261622928065.7323966-CDS-E-siliculosus-1a_F_contig15524:511..826Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15524 512..826 +
1696318792.9538891-CDS-E-siliculosus-1a_F_contig15524:511..8261696318792.9538891-CDS-E-siliculosus-1a_F_contig15524:511..826Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15524 512..826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15524.3200.1

>prot_E-siliculosus-1a_F_contig15524.3200.1 ID=prot_E-siliculosus-1a_F_contig15524.3200.1|Name=mRNA_E-siliculosus-1a_F_contig15524.3200.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=105bp
MQGPFFFFSFHIFFPLCFIIGFVCRRPHRVIIMCAANFDTRVMFWLCMHN
TRVRPILFEISREIFFRDICGSCLGLFFIRLNVTLVTTHTQPTTLYQVLC
STNQ*
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mRNA from alignment at E-siliculosus-1a_F_contig15524:251..878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15524.3200.1 ID=mRNA_E-siliculosus-1a_F_contig15524.3200.1|Name=mRNA_E-siliculosus-1a_F_contig15524.3200.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=628bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15524:251..878+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTGCTGCTGCTGACGACGATGCTTATGCTGCTGTCACTCTCATCACGCG
TCGCCAACCACAAGACTGCTAGACAAACGCTGTGGCTGTAGCTATGTAAC
AAGTACGCACGCCACTCTACCGTCGCACAGCTGGCCCCAAGTCGGAACAA
TTAACGGAACATAGAACAATGTAGGATTGCAAGTAGGAATGACTGACATG
TACTTGTAGAGCTGAAATGTACAATTAGCCCTCATCCCTTGGAAAATGCG
AGTTCGAATCCATGCAGGGACCATTTTTCTTTTTTTCCTTTCACATTTTT
TTTCCATTATGTTTTATTATTGGTTTCGTTTGTCGCCGCCCCCACCGTGT
AATAATTATGTGTGCTGCTAATTTTGATACGCGTGTGATGTTTTGGCTGT
GTATGCACAACACGCGTGTGCGTCCCATTCTCTTTGAAATATCCAGAGAA
ATATTTTTTAGAGACATATGCGGCTCCTGTCTGGGTTTGTTTTTTATCCG
TCTCAATGTCACACTCGTAACCACACACACACAACCTACTACTTTGTACC
AGGTGTTGTGTTCTACCAACCAGTAAATTATCAGTAAATTTAGCATATTT
TCATTTTCATTCCCCGTCCTCGGATTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15524:251..878+

>mRNA_E-siliculosus-1a_F_contig15524.3200.1 ID=mRNA_E-siliculosus-1a_F_contig15524.3200.1|Name=mRNA_E-siliculosus-1a_F_contig15524.3200.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15524:251..878+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGGACCATTTTTCTTTTTTTCCTTTCACATTTTTTTTCCATTATG
TTTTATTATTGGTTTCGTTTGTCGCCGCCCCCACCGTGTAATAATTATGT
GTGCTGCTAATTTTGATACGCGTGTGATGTTTTGGCTGTGTATGCACAAC
ACGCGTGTGCGTCCCATTCTCTTTGAAATATCCAGAGAAATATTTTTTAG
AGACATATGCGGCTCCTGTCTGGGTTTGTTTTTTATCCGTCTCAATGTCA
CACTCGTAACCACACACACACAACCTACTACTTTGTACCAGGTGTTGTGT
TCTACCAACCAGTAAATGCAGGGACCATTTTTCTTTTTTTCCTTTCACAT
TTTTTTTCCATTATGTTTTATTATTGGTTTCGTTTGTCGCCGCCCCCACC
GTGTAATAATTATGTGTGCTGCTAATTTTGATACGCGTGTGATGTTTTGG
CTGTGTATGCACAACACGCGTGTGCGTCCCATTCTCTTTGAAATATCCAG
AGAAATATTTTTTAGAGACATATGCGGCTCCTGTCTGGGTTTGTTTTTTA
TCCGTCTCAATGTCACACTCGTAACCACACACACACAACCTACTACTTTG
TACCAGGTGTTGTGTTCTACCAACCAGTAA
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