mRNA_E-siliculosus-1a_F_contig15519.3195.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15519.3195.1
Unique NamemRNA_E-siliculosus-1a_F_contig15519.3195.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: A0A0F9VM77_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9VM77_9ZZZZ)

HSP 1 Score: 223 bits (568), Expect = 3.650e-67
Identity = 112/126 (88.89%), Postives = 121/126 (96.03%), Query Frame = 1
Query:    1 MHSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELVERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAERELNGALEY 378
            MHSLLALNVPMWRVTQRLQEQR+HRYPMLKELFRG+LERLNVDD+ELVERLHSV IEEGSPCLGKTLS YDF+ALEITVTALVRNGER RYP+ ET LL++DV+VLLGTPEALEKAER+LNGALEY
Sbjct:  535 MHSLLALNVPMWRVTQRLQEQRMHRYPMLKELFRGNLERLNVDDDELVERLHSVLIEEGSPCLGKTLSCYDFDALEITVTALVRNGERIRYPDRETSLLNKDVLVLLGTPEALEKAERQLNGALEY 660          
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: UPI00201F1D7F (cation:proton antiporter n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201F1D7F)

HSP 1 Score: 157 bits (397), Expect = 1.660e-42
Identity = 82/117 (70.09%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 MHSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELVERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAE 351
            MHSLL LNVP+WRVTQRLQEQRI RYPMLKELFR SLERLN + +   ERLH+V I+  SPCLGKTL  YD  +  +TVTALVR+ +R RYP  ETVL   DVVVLLGTP+ALE AE
Sbjct:  535 MHSLLTLNVPLWRVTQRLQEQRIKRYPMLKELFRSSLERLNEEHDGKTERLHAVQIDAKSPCLGKTLGSYDLPSHAVTVTALVRDNQRTRYPAQETVLEAGDVVVLLGTPDALETAE 651          
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: A0A1U9R808_9GAMM (Sodium:proton exchanger n=2 Tax=Halomonas TaxID=2745 RepID=A0A1U9R808_9GAMM)

HSP 1 Score: 153 bits (387), Expect = 4.260e-41
Identity = 81/121 (66.94%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    1 MHSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELVERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAERELN 363
            MHSLL LNVPMWRVTQRLQEQRI RYPMLKELFR S+E L+ + +   ERLHSV +E  S CLG TL  YDF +  +TVTALVR+ ERFRYP+ E  L   DV+VLLGT EALE+AER L+
Sbjct:  535 MHSLLTLNVPMWRVTQRLQEQRIKRYPMLKELFRSSVELLDEESDGKTERLHSVLLEPESACLGSTLGSYDFPSHSVTVTALVRDQERFRYPDTEIKLKAGDVLVLLGTSEALEEAERRLS 655          
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: UPI00054AA3B7 (monovalent cation:proton antiporter family protein n=4 Tax=Halomonas TaxID=2745 RepID=UPI00054AA3B7)

HSP 1 Score: 147 bits (371), Expect = 7.360e-39
Identity = 77/123 (62.60%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    1 MHSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELVERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAERELNGA 369
            MHSLL LNVPMWRVTQRLQEQRI+RYPMLKELFRGSLERLN + ++ +ERLHS+ ++  S  +G+ L     +A  + VTALVR  ER RYP   T L   DV+VLLGTPEALE+A+  LN A
Sbjct:  535 MHSLLTLNVPMWRVTQRLQEQRINRYPMLKELFRGSLERLNEEHDDRIERLHSLVLDADSRYVGQPLGNCPLQAPRVVVTALVRGQERIRYPEPATTLQPGDVLVLLGTPEALEEADAALNPA 657          
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: UPI001F16BCB1 (cation:proton antiporter n=1 Tax=Halomonas zhangzhouensis TaxID=2733481 RepID=UPI001F16BCB1)

HSP 1 Score: 132 bits (332), Expect = 1.930e-33
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    4 HSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELVERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAERELN 363
            HSLLAL VP++RVT+ LQEQR  RYPML+ELFRG+L+ +   D+  VERLH++ +  GSP +G TL Q   E  E+ VTALVR  +R+RYP  +T L +EDVVVLLG P+ L +AER L 
Sbjct:  538 HSLLALQVPLYRVTRYLQEQRASRYPMLRELFRGTLDAMATPDDADVERLHAIKLSAGSPAVGHTLKQLASEMQEVMVTALVRGQQRYRYPAEDTELQEEDVVVLLGLPDDLRQAERSLT 657          
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: A0A6M4FP24_9GAMM (Sodium:proton exchanger n=1 Tax=Halomonas sp. PA5 TaxID=2730357 RepID=A0A6M4FP24_9GAMM)

HSP 1 Score: 127 bits (319), Expect = 1.190e-31
Identity = 67/122 (54.92%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    4 HSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELVERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAERELNGA 369
            HSLLAL+VP +++TQ LQEQR  RYPMLKELFRG  + LN +D E  ERLHS+ + EGSP L + L   D E  ++ VTALVRN  R RYP+  T ++  DV+V+LG PE L++ ER L G+
Sbjct:  538 HSLLALSVPQYKITQYLQEQRTSRYPMLKELFRGDHDALNTED-EKAERLHSIVMHEGSPVLEEELGALDLEDDQVMVTALVRNDRRQRYPDKRTRIMAGDVLVMLGAPEDLKRVERRLTGS 658          
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: W7Q337_9GAMM (Uncharacterized protein n=2 Tax=Halomonas sp. BC04 TaxID=1403540 RepID=W7Q337_9GAMM)

HSP 1 Score: 117 bits (294), Expect = 3.580e-30
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    4 HSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELVERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAERELNG 366
            H+L +L VP++RV Q+LQEQR   Y ML+ELFRG+L+ +  ++ E  E LHSV + EG P +G +LS+ D E  +++VTA+VRN ER RYP G T +  +DV+VLLG+ + LE+ ER L G
Sbjct:  127 HALQSLGVPLFRVAQQLQEQRSSHYRMLRELFRGTLDSIKPEETEK-ESLHSVILHEGCPAIGHSLSELDTEQDQVSVTAIVRNNERERYPAGSTEVQADDVLVLLGSQDNLERVERRLTG 246          
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: UPI0017469166 (monovalent cation:proton antiporter family protein n=2 Tax=Halomonas TaxID=2745 RepID=UPI0017469166)

HSP 1 Score: 122 bits (306), Expect = 7.240e-30
Identity = 67/125 (53.60%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    4 HSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELV---ERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAERELNGA 369
            H+L AL VP++RVT+ LQEQR  RY ML+ELFRGSL+  ++ D       ERLHSV + EGSP +G+TL+Q D E  +++VTALVR  +R RYP   T ++ +DV+VLLG+ + LEK ER L GA
Sbjct:  535 HALQALGVPLYRVTRHLQEQRTSRYQMLRELFRGSLD--SIQDPRPAGEQERLHSVVLSEGSPAIGQTLAQLDTEQDQVSVTALVREDQRRRYPEKSTQVVADDVLVLLGSQDNLEKVERRLTGA 657          
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: A0A101D000_9GAMM (Sodium/hydrogen exchanger n=1 Tax=Halomonas sp. 54_146 TaxID=1635257 RepID=A0A101D000_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 1.840e-29
Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    4 HSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERL-NVDDNELVERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAERELNG 366
            H+L AL VP++RVT+ LQEQR   Y ML+ELFRGSL+ L N+      ERLH+V + EGSP +G++L+Q D E  +++VTA+VR  +R RYP G T +  +DV+VLLGT + LEK ER L G
Sbjct:  533 HALQALGVPLYRVTRHLQEQRASHYRMLRELFRGSLDSLDNLRPPGETERLHAVVLHEGSPAIGQSLAQLDTEKDQVSVTAMVREEQRNRYPPGNTEVQADDVLVLLGTQDNLEKVERRLTG 654          
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Match: UPI001BD2E0F8 (cation:proton antiporter n=1 Tax=Halomonas sp. TRM85114 TaxID=2810616 RepID=UPI001BD2E0F8)

HSP 1 Score: 115 bits (287), Expect = 2.790e-27
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    4 HSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELV---ERLHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLDEDVVVLLGTPEALEKAERELNG 366
            H+L  L VP++RVT+ LQEQR   Y ML+ELFRGSL+  N+ D+      ERLHSV + EG P +G+ L+Q   E  +++VTALVR+G+R RYP  +T +  +DV+VLLGT + LEK ER L G
Sbjct:  533 HALQTLGVPLYRVTRHLQEQRASHYSMLRELFRGSLD--NIQDHRPEGESERLHSVVLHEGCPAIGQRLAQLYTENDQVSVTALVRDGQRNRYPAEDTEVQADDVLVLLGTQDNLEKVERRLTG 654          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15519.3195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9VM77_9ZZZZ3.650e-6788.89Uncharacterized protein n=1 Tax=marine sediment me... [more]
UPI00201F1D7F1.660e-4270.09cation:proton antiporter n=1 Tax=Halomonas olivari... [more]
A0A1U9R808_9GAMM4.260e-4166.94Sodium:proton exchanger n=2 Tax=Halomonas TaxID=27... [more]
UPI00054AA3B77.360e-3962.60monovalent cation:proton antiporter family protein... [more]
UPI001F16BCB11.930e-3356.67cation:proton antiporter n=1 Tax=Halomonas zhangzh... [more]
A0A6M4FP24_9GAMM1.190e-3154.92Sodium:proton exchanger n=1 Tax=Halomonas sp. PA5 ... [more]
W7Q337_9GAMM3.580e-3050.41Uncharacterized protein n=2 Tax=Halomonas sp. BC04... [more]
UPI00174691667.240e-3053.60monovalent cation:proton antiporter family protein... [more]
A0A101D000_9GAMM1.840e-2953.28Sodium/hydrogen exchanger n=1 Tax=Halomonas sp. 54... [more]
UPI001BD2E0F82.790e-2751.61cation:proton antiporter n=1 Tax=Halomonas sp. TRM... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15519contigE-siliculosus-1a_F_contig15519:573..953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size381
Model size381
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelThiotrichales
COG Functional cat.P
EggNOG OGs1MV34@1224,1RNVR@1236,4607H@72273,COG0475@1,COG0475@2,COG0490@1,COG0490@2,COG1226@1,COG1226@2
EggNOG free text desc.Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
KEGG TC2.A.37
KEGG koko:K03455
Preferred namekefB
Seed eggNOG ortholog717773.Thicy_1090
Seed ortholog evalue7.7e-19
Seed ortholog score100.1
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.7991095-CDS-E-siliculosus-1a_F_contig15519:572..9531622928064.7991095-CDS-E-siliculosus-1a_F_contig15519:572..953Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15519 573..953 -
1696318792.5981243-CDS-E-siliculosus-1a_F_contig15519:572..9531696318792.5981243-CDS-E-siliculosus-1a_F_contig15519:572..953Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15519 573..953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15519.3195.1prot_E-siliculosus-1a_F_contig15519.3195.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15519 573..953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15519.3195.1

>prot_E-siliculosus-1a_F_contig15519.3195.1 ID=prot_E-siliculosus-1a_F_contig15519.3195.1|Name=mRNA_E-siliculosus-1a_F_contig15519.3195.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=127bp
MHSLLALNVPMWRVTQRLQEQRIHRYPMLKELFRGSLERLNVDDNELVER
LHSVPIEEGSPCLGKTLSQYDFEALEITVTALVRNGERFRYPNGETVLLD
EDVVVLLGTPEALEKAERELNGALEY*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig15519:573..953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15519.3195.1 ID=mRNA_E-siliculosus-1a_F_contig15519.3195.1|Name=mRNA_E-siliculosus-1a_F_contig15519.3195.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=381bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15519:573..953- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATTCGCTGCTTGCTTTGAATGTCCCAATGTGGCGTGTAACACAGCG TTTACAAGAGCAACGAATCCATCGCTACCCTATGCTTAAAGAGCTTTTTC GCGGCAGTTTAGAAAGGCTCAATGTGGATGATAATGAATTGGTGGAACGG CTACACTCCGTTCCTATTGAAGAGGGCAGCCCCTGCCTTGGTAAAACATT AAGCCAATACGATTTCGAAGCGCTTGAAATCACCGTTACTGCATTAGTGA GAAACGGTGAACGGTTTCGCTACCCTAACGGTGAAACGGTGTTATTAGAT GAGGATGTTGTGGTGCTATTAGGCACGCCAGAAGCGCTTGAGAAAGCTGA AAGAGAACTTAATGGAGCCCTGGAATATTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15519:573..953-

>mRNA_E-siliculosus-1a_F_contig15519.3195.1 ID=mRNA_E-siliculosus-1a_F_contig15519.3195.1|Name=mRNA_E-siliculosus-1a_F_contig15519.3195.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15519:573..953- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATTCGCTGCTTGCTTTGAATGTCCCAATGTGGCGTGTAACACAGCG
TTTACAAGAGCAACGAATCCATCGCTACCCTATGCTTAAAGAGCTTTTTC
GCGGCAGTTTAGAAAGGCTCAATGTGGATGATAATGAATTGGTGGAACGG
CTACACTCCGTTCCTATTGAAGAGGGCAGCCCCTGCCTTGGTAAAACATT
AAGCCAATACGATTTCGAAGCGCTTGAAATCACCGTTACTGCATTAGTGA
GAAACGGTGAACGGTTTCGCTACCCTAACGGTGAAACGGTGTTATTAGAT
GAGGATGTTGTGGTGCTATTAGGCACGCCAGAAGCGCTTGAGAAAGCTGA
AAGAGAACTTAATGGAGCCCTGGAATATTAAATGCATTCGCTGCTTGCTT
TGAATGTCCCAATGTGGCGTGTAACACAGCGTTTACAAGAGCAACGAATC
CATCGCTACCCTATGCTTAAAGAGCTTTTTCGCGGCAGTTTAGAAAGGCT
CAATGTGGATGATAATGAATTGGTGGAACGGCTACACTCCGTTCCTATTG
AAGAGGGCAGCCCCTGCCTTGGTAAAACATTAAGCCAATACGATTTCGAA
GCGCTTGAAATCACCGTTACTGCATTAGTGAGAAACGGTGAACGGTTTCG
CTACCCTAACGGTGAAACGGTGTTATTAGATGAGGATGTTGTGGTGCTAT
TAGGCACGCCAGAAGCGCTTGAGAAAGCTGAAAGAGAACTTAATGGAGCC
CTGGAATATTAA
back to top