mRNA_E-siliculosus-1a_F_contig15513.3192.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: G4F8S3_9GAMM (Ribosomal RNA small subunit methyltransferase I n=36 Tax=root TaxID=1 RepID=G4F8S3_9GAMM) HSP 1 Score: 305 bits (782), Expect = 7.280e-103 Identity = 155/169 (91.72%), Postives = 160/169 (94.67%), Query Frame = 1
Query: 1 PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
PCALITALSGAGLPTDRFVF GFLPAKPGARRQAL+ WKTREETLVFYESPHRI+ TLEALQEQMAGRDVVLARELTKTFETFLHGTP SLLEQLAADPNQARGEFV+IVAGA PV QSEHQ+ISA+ LLEALLAEGVGVKQGAAIASRMLGGRKQ WYARLQAIKG H
Sbjct: 117 PCALITALSGAGLPTDRFVFAGFLPAKPGARRQALEGWKTREETLVFYESPHRIVHTLEALQEQMAGRDVVLARELTKTFETFLHGTPESLLEQLAADPNQARGEFVIIVAGAPPVEQSEHQNISAEALLEALLAEGVGVKQGAAIASRMLGGRKQAWYARLQAIKGEH 285
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: A0A0P8BC03_9GAMM (Ribosomal RNA small subunit methyltransferase I n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A0P8BC03_9GAMM) HSP 1 Score: 290 bits (743), Expect = 6.190e-97 Identity = 146/169 (86.39%), Postives = 153/169 (90.53%), Query Frame = 1
Query: 1 PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALD WKTREETLVFYESPHRI+ TLEAL EQ+A RDVVLARELTKTFETFLHGTPASLL QLA DPNQARGEFVVIVAGA P +QSE Q I ADTLLEALLAEGVGVKQ A +A+R+ GRKQTWYARLQA+KG H
Sbjct: 117 PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALDGWKTREETLVFYESPHRIVHTLEALNEQLAERDVVLARELTKTFETFLHGTPASLLSQLADDPNQARGEFVVIVAGAPPAVQSEQQSIDADTLLEALLAEGVGVKQAAGVAARLFSGRKQTWYARLQAMKGDH 285
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: A0A1G9ZJU2_9GAMM (Ribosomal RNA small subunit methyltransferase I n=2 Tax=Halomonas TaxID=2745 RepID=A0A1G9ZJU2_9GAMM) HSP 1 Score: 289 bits (740), Expect = 1.770e-96 Identity = 146/169 (86.39%), Postives = 153/169 (90.53%), Query Frame = 1
Query: 1 PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
PCALITALSGAGLPTDRFVF GFLPAKPGARRQALDAWKTREETLVFYESPHRI+ TLEAL EQMAGRDVVLARELTKTFETFLHGTPASLLEQL ADPNQARGEFVV+VAGA PV QSEHQ ISAD LL LLAEG+GVKQ A+IA+ + GGRKQTWYARLQ +K H
Sbjct: 117 PCALITALSGAGLPTDRFVFAGFLPAKPGARRQALDAWKTREETLVFYESPHRIVHTLEALNEQMAGRDVVLARELTKTFETFLHGTPASLLEQLVADPNQARGEFVVMVAGAPPVEQSEHQTISADALLTTLLAEGIGVKQAASIAAGIFGGRKQTWYARLQTMKSEH 285
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: A0A1A0F056_9GAMM (Ribosomal RNA small subunit methyltransferase I n=6 Tax=Halomonas TaxID=2745 RepID=A0A1A0F056_9GAMM) HSP 1 Score: 282 bits (722), Expect = 9.630e-94 Identity = 141/169 (83.43%), Postives = 152/169 (89.94%), Query Frame = 1
Query: 1 PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
PCALITALS AGLPTDRFVFGGFLPAKPGARRQAL+AWK REETLVFYESPHRI+ TLEAL EQ+ GR+VVLARELTKTFETFLHGTPA+LL QL+ DPNQARGEFVVIVAGA PV QSE Q I ADTLLEALL EGVGVKQ A++A+R+ GGRKQTWYARLQ +KG H
Sbjct: 117 PCALITALSAAGLPTDRFVFGGFLPAKPGARRQALEAWKVREETLVFYESPHRIVHTLEALHEQLEGREVVLARELTKTFETFLHGTPAALLAQLSNDPNQARGEFVVIVAGAPPVAQSEQQAIDADTLLEALLGEGVGVKQAASVAARLFGGRKQTWYARLQGMKGEH 285
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: A0A0D7V195_9GAMM (Ribosomal RNA small subunit methyltransferase I n=15 Tax=Halomonas TaxID=2745 RepID=A0A0D7V195_9GAMM) HSP 1 Score: 264 bits (675), Expect = 1.330e-86 Identity = 130/169 (76.92%), Postives = 149/169 (88.17%), Query Frame = 1
Query: 1 PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
PCAL+TALSGAGLPTDRF FGGFLPAKP ARRQAL+ W++REETLVFYESPHRI+ TLEAL EQM R VVLARELTKTFETFL G+PA+L +QLA DPNQ+RGEFV+I++GA P +Q + Q I+A+ LL ALLAEGVGVKQGA+IA+RMLGGRKQ WYARLQA+KG H
Sbjct: 117 PCALVTALSGAGLPTDRFTFGGFLPAKPSARRQALEKWQSREETLVFYESPHRIVHTLEALCEQMTERTVVLARELTKTFETFLQGSPAALRDQLAEDPNQSRGEFVIIISGAPPAVQGDEQSINANELLAALLAEGVGVKQGASIAARMLGGRKQEWYARLQAMKGQH 285
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: H0J452_9GAMM (Ribosomal RNA small subunit methyltransferase I n=3 Tax=Halomonas TaxID=2745 RepID=H0J452_9GAMM) HSP 1 Score: 263 bits (673), Expect = 2.670e-86 Identity = 131/168 (77.98%), Postives = 146/168 (86.90%), Query Frame = 1
Query: 4 CALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
CAL+ ALSGAGLPTDRF FGGFLPAKPGARRQAL+ W+ REETLVFYESPHRIL TLEAL+EQM R+VVLARELTKTFETFLHG+P L++ L DPNQARGEFVVI++GA V +HQ I AD LL++LLAEGVGVKQGAA+A+RMLGGRKQ WYARLQAIKG H
Sbjct: 118 CALVAALSGAGLPTDRFTFGGFLPAKPGARRQALEQWEAREETLVFYESPHRILHTLEALREQMPARNVVLARELTKTFETFLHGSPEELIQCLTDDPNQARGEFVVIISGAPAVALGDHQAIHADELLKSLLAEGVGVKQGAAVAARMLGGRKQEWYARLQAIKGEH 285
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: UPI00201EFF90 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201EFF90) HSP 1 Score: 263 bits (671), Expect = 5.380e-86 Identity = 134/169 (79.29%), Postives = 144/169 (85.21%), Query Frame = 1
Query: 1 PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
PCALITALSGAGLPTDRF FGGFLPAKPGARRQ L+ W REETLVFYESPHRI+ TLEAL+EQM R VVLARELTKTFETFL G+ LL+ LA DPNQARGEFVVIVAGA V Q +HQ + AD LL+ LLAEGVGVKQGAAIA+RMLGGRKQ WYARLQA+KG H
Sbjct: 117 PCALITALSGAGLPTDRFTFGGFLPAKPGARRQVLEQWLAREETLVFYESPHRIVHTLEALREQMPERTVVLARELTKTFETFLQGSADELLDLLAGDPNQARGEFVVIVAGAPKVAQGDHQAVHADELLKTLLAEGVGVKQGAAIAARMLGGRKQEWYARLQAMKGEH 285
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: A0A2T0V7F3_9GAMM (Ribosomal RNA small subunit methyltransferase I n=5 Tax=Halomonas TaxID=2745 RepID=A0A2T0V7F3_9GAMM) HSP 1 Score: 261 bits (668), Expect = 1.530e-85 Identity = 132/168 (78.57%), Postives = 143/168 (85.12%), Query Frame = 1
Query: 4 CALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
CALI ALSGAGLPTDRFVFGGFLPAKPGARRQ L+ W TREETLVFYESPHRI+ TL+AL+E R VVLARELTKTFETFL GTP +L+ QL DPNQARGEFVV+VAGA PV + EHQDISAD L++ LL EGVGVKQGAAI +RMLGGRKQ WYARLQAIK H
Sbjct: 118 CALIAALSGAGLPTDRFVFGGFLPAKPGARRQVLEDWSTREETLVFYESPHRIMHTLDALKESFPERAVVLARELTKTFETFLQGTPEALITQLTEDPNQARGEFVVMVAGAPPVTEREHQDISADELMKTLLDEGVGVKQGAAIVARMLGGRKQEWYARLQAIKTEH 285
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: A0A3D4KNR1_HALSX (Ribosomal RNA small subunit methyltransferase I n=5 Tax=Halomonas TaxID=2745 RepID=A0A3D4KNR1_HALSX) HSP 1 Score: 261 bits (668), Expect = 1.530e-85 Identity = 131/169 (77.51%), Postives = 144/169 (85.21%), Query Frame = 1
Query: 1 PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
PCA +TALSGAGLPTDRF F GFLPAKPG RRQAL+ W+ REETLVFYESPHRI+ TLEAL++QM R VVLARELTKTFETFL GTP +LL QL DPNQARGEFVV++AGA PV QSEHQ+I AD L++ LL EGVGVKQGAAI +RMLGGRKQ WYARLQAIK H
Sbjct: 117 PCAFVTALSGAGLPTDRFTFCGFLPAKPGPRRQALEQWQAREETLVFYESPHRIVHTLEALRDQMPERSVVLARELTKTFETFLQGTPEALLAQLTEDPNQARGEFVVMMAGAPPVTQSEHQNIGADALMKVLLDEGVGVKQGAAIVARMLGGRKQEWYARLQAIKTEH 285
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Match: UPI001CC74715 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Halomonas aquamarina TaxID=77097 RepID=UPI001CC74715) HSP 1 Score: 261 bits (667), Expect = 2.180e-85 Identity = 131/168 (77.98%), Postives = 144/168 (85.71%), Query Frame = 1
Query: 4 CALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESPHRILRTLEALQEQMAGRDVVLARELTKTFETFLHGTPASLLEQLAADPNQARGEFVVIVAGAAPVIQSEHQDISADTLLEALLAEGVGVKQGAAIASRMLGGRKQTWYARLQAIKGAH 507
CAL+ AL AGLPTDRFVFGGFLPAKPGARRQAL+AW TREETLVFYESPHRI+ TL+AL E R VVLARELTKTFETFL GTP +L+ QL DPNQARGEFVV+VAGAAPV + EHQDISAD L++ALL EGVGVKQGAA+ +RMLGGRKQ WYARLQA+K H
Sbjct: 118 CALVAALCSAGLPTDRFVFGGFLPAKPGARRQALEAWSTREETLVFYESPHRIMHTLDALNECFPERAVVLARELTKTFETFLQGTPDALIAQLTQDPNQARGEFVVMVAGAAPVTEREHQDISADELMKALLDEGVGVKQGAAVVARMLGGRKQEWYARLQALKTEH 285 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig15513.3192.1 >prot_E-siliculosus-1a_F_contig15513.3192.1 ID=prot_E-siliculosus-1a_F_contig15513.3192.1|Name=mRNA_E-siliculosus-1a_F_contig15513.3192.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=170bp PCALITALSGAGLPTDRFVFGGFLPAKPGARRQALDAWKTREETLVFYESback to top mRNA from alignment at E-siliculosus-1a_F_contig15513:449..958- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig15513.3192.1 ID=mRNA_E-siliculosus-1a_F_contig15513.3192.1|Name=mRNA_E-siliculosus-1a_F_contig15513.3192.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=510bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15513:449..958- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15513:449..958- >mRNA_E-siliculosus-1a_F_contig15513.3192.1 ID=mRNA_E-siliculosus-1a_F_contig15513.3192.1|Name=mRNA_E-siliculosus-1a_F_contig15513.3192.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15513:449..958- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |