mRNA_E-siliculosus-1a_F_contig15513.3191.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A653PZM6_9GAMM (Uncharacterized protein n=1 Tax=Halomonas titanicae TaxID=664683 RepID=A0A653PZM6_9GAMM) HSP 1 Score: 148 bits (374), Expect = 1.130e-44 Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 2
Query: 113 LGPYLVLLRVGFTMPRTVTRRAVRSYRTLSPLPAPRGLGGLLSAALSVGSRRPGVTWHSALWSPDFPPPTPFEGH 337
+ PYLVLLRVGFTMPRTVTRRAVRSYRTLSPLPAP+GLGGLLSAALSVGSRRPGVTWHSALWSPDFPPPTPF+G+
Sbjct: 1 MDPYLVLLRVGFTMPRTVTRRAVRSYRTLSPLPAPKGLGGLLSAALSVGSRRPGVTWHSALWSPDFPPPTPFKGY 75
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A5P9EH44_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter sp. THAF39 TaxID=2587857 RepID=A0A5P9EH44_9GAMM) HSP 1 Score: 131 bits (329), Expect = 9.340e-37 Identity = 71/108 (65.74%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 1 EWGSRPISRVLSWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPF-TLTGPEGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSPN 321
+ S PISRVLSWT I LG A PQ SSNLP SAGHAIG LFGLAP GVYH A L PF P+ LRR T CCTFRRLAPPRRYLA CP EPGLSSP+
Sbjct: 8 KMASSPISRVLSWTVIHLGPASPQASSNLPESSAGHAIGFLFGLAPGGVYHRRGLLPATRCALTAPFHPYRRPKALRRYTFCCTFRRLAPPRRYLAPCPAEPGLSSPD 115
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A1I1XHZ6_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter sp. DSM 26671 TaxID=1761793 RepID=A0A1I1XHZ6_9GAMM) HSP 1 Score: 131 bits (330), Expect = 1.520e-36 Identity = 71/105 (67.62%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 10 SRPISRVLSWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPF-TLTGPEGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSPN 321
S PISRVLSWT I LG+A PQ SSNLP SAGHAIG LFGLAP GVYH A L PF P LRR T CCTFRRLAPPRRYLA CP+EPGLSSP
Sbjct: 9 SSPISRVLSWTVIHLGSASPQTSSNLPESSAGHAIGFLFGLAPGGVYHRRGLLPATRCALTAPFHPYRRPRALRRYTFCCTFRRLAPPRRYLAPCPVEPGLSSPG 113
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A009NBC4_9GAMM (Uncharacterized protein n=1 Tax=Acinetobacter sp. 1475718 TaxID=1310652 RepID=A0A009NBC4_9GAMM) HSP 1 Score: 129 bits (323), Expect = 2.240e-36 Identity = 68/100 (68.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query: 46 IPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPFTLTGPEGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSPNTF*GASAA 345
IPLGA RSS+LP S G G LFGLA GVYHA +CYQ RGALLPHPFTLT +RRSTLCCTFRRL+PPRRYLA CPM+PGLSSP + S A
Sbjct: 3 IPLGAQSLIRSSDLPESSTGRTSGFLFGLASGGVYHAVNCYQTRGALLPHPFTLT--SRMRRSTLCCTFRRLSPPRRYLAPCPMKPGLSSPASVTKTSTA 100
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A0U5F8Q8_XANCI (Uncharacterized protein n=1 Tax=Xanthomonas citri pv. citri TaxID=611301 RepID=A0A0U5F8Q8_XANCI) HSP 1 Score: 130 bits (327), Expect = 7.770e-36 Identity = 73/128 (57.03%), Postives = 79/128 (61.72%), Query Frame = 3
Query: 9 ESADKPGSVVDSHSSRRCVTTALKQPTRTQRGPRHWVPIWSCSEWGLPCHAL-------------LPGARCALTAPFHPYRPRGA*AVYS-------------LLHFPSARAAQALPGTLPYGARTFL 314
E ADKPGSVVDSHSSRR VT ALKQPTR QRGPR W+PIWSCS WGLPC ++ LP R A +R + A +S LLHFPSA AAQALPGTLPYGARTFL
Sbjct: 44 EPADKPGSVVDSHSSRRYVTAALKQPTRIQRGPRQWIPIWSCSRWGLPCRSVTGLAVRSYRTISPLPAPRHPFAASERAWRCEASLARFSGGKGVTRDVGGIFLLHFPSACAAQALPGTLPYGARTFL 171
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A7Z7J2H9_XANCH (Uncharacterized protein n=1 Tax=Xanthomonas campestris pv. phaseoli TaxID=317013 RepID=A0A7Z7J2H9_XANCH) HSP 1 Score: 129 bits (324), Expect = 4.390e-35 Identity = 74/128 (57.81%), Postives = 79/128 (61.72%), Query Frame = 3
Query: 9 ESADKPGSVVDSHSSRRCVTTALKQPTRTQRGPRHWVPIWSCSEWGLPCHAL-------------LPGARCALTAPFHPYRPRGA*AVYS-------------LLHFPSARAAQALPGTLPYGARTFL 314
E ADKPGSVVDSHSSRR VT ALKQPTR QRGPR W+PIWSCS WGLPC ++ LP R L A +R + A S LLHFPSA AAQALPGTLPYGARTFL
Sbjct: 33 EPADKPGSVVDSHSSRRYVTAALKQPTRIQRGPRQWIPIWSCSRWGLPCRSVTGLAVRSYRTISPLPAPRHPLAASGRTWRCDASLARSSGGKGVTRDVGGIFLLHFPSACAAQALPGTLPYGARTFL 160
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A1T4TX09_9GAMM (Uncharacterized protein n=1 Tax=Enterovibrio nigricans DSM 22720 TaxID=1121868 RepID=A0A1T4TX09_9GAMM) HSP 1 Score: 123 bits (308), Expect = 7.750e-34 Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 10 SRPISRVL---SWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPFTLT-GP------EGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSP 318
S P+SRVL + I LG SSNLP P+AG A LFGLAP GVY AT+CYQ+RGALLPHPFTLT P G RR LCCT RRLAPPRRYLA CP+EPGLSSP
Sbjct: 2 SWPVSRVLYRKTAVTIRLGLQSLTGSSNLPVPNAGRANRDLFGLAPGGVYRATNCYQSRGALLPHPFTLTCAPYLLAEHRGHRRFALCCTGRRLAPPRRYLAPCPVEPGLSSP 114
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A1T4N154_VIBCI (Uncharacterized protein n=1 Tax=Vibrio cincinnatiensis DSM 19608 TaxID=1123491 RepID=A0A1T4N154_VIBCI) HSP 1 Score: 106 bits (265), Expect = 4.410e-28 Identity = 54/67 (80.60%), Postives = 57/67 (85.07%), Query Frame = 2
Query: 122 YLVLLRVGFTMPRTVTRRAVRSYRTLSPLPAPRG-LGGLLSAALSVGSRRPGVTWHSALWSPDFPPP 319
YLVLLRV FT+ RTV RR VRSYRTLSPLP P+G +GGLLSAAL VG R PGVTWH ALWSPDFPPP
Sbjct: 4 YLVLLRVEFTLLRTVARRTVRSYRTLSPLPDPQGAIGGLLSAALVVGLRPPGVTWHPALWSPDFPPP 70
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A2U1D0A6_9GAMM (Uncharacterized protein n=1 Tax=Tamilnaduibacter salinus TaxID=1484056 RepID=A0A2U1D0A6_9GAMM) HSP 1 Score: 110 bits (275), Expect = 1.600e-27 Identity = 63/106 (59.43%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 10 SRPISRVLSWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLP---HPFTLTGPEGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSP 318
S P+SRVLS I LG ALPQ SS+LP SAG +G LFGLAP GV H A L HP+ +T G R CCTFRRLAPPRRYLA CPMEPGLSSP
Sbjct: 115 SSPVSRVLSGATIHLGPALPQASSDLPESSAGRTVGLLFGLAPGGVCHRRGLLPATRCALTAPFHPYPITAVTG--RYPFCCTFRRLAPPRRYLAPCPMEPGLSSP 218
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: UPI0019A348F6 (Uncharacterized protein n=1 Tax=Kushneria pakistanensis TaxID=1508770 RepID=UPI0019A348F6) HSP 1 Score: 105 bits (263), Expect = 6.310e-27 Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 7 GSRPISRVLSWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPFTLT-GPEGL 225
GSRP+SRVLS T IPLG + P SSNLP P+AGH G LFGLAP GVYHAT CYQARGALLPHPFTL G E +
Sbjct: 8 GSRPVSRVLSRTVIPLGRSSPNASSNLPEPNAGHVNGFLFGLAPDGVYHATTCYQARGALLPHPFTLAVGTESI 81 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig15513.3191.1 >prot_E-siliculosus-1a_F_contig15513.3191.1 ID=prot_E-siliculosus-1a_F_contig15513.3191.1|Name=mRNA_E-siliculosus-1a_F_contig15513.3191.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp MGESADKPGSVVDSHSSRRCVTTALKQPTRTQRGPRHWVPIWSCSEWGLPback to top mRNA from alignment at E-siliculosus-1a_F_contig15513:55..401+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig15513.3191.1 ID=mRNA_E-siliculosus-1a_F_contig15513.3191.1|Name=mRNA_E-siliculosus-1a_F_contig15513.3191.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=347bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15513:55..401+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15513:55..401+ >mRNA_E-siliculosus-1a_F_contig15513.3191.1 ID=mRNA_E-siliculosus-1a_F_contig15513.3191.1|Name=mRNA_E-siliculosus-1a_F_contig15513.3191.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15513:55..401+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |