mRNA_E-siliculosus-1a_F_contig15513.3191.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15513.3191.1
Unique NamemRNA_E-siliculosus-1a_F_contig15513.3191.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A653PZM6_9GAMM (Uncharacterized protein n=1 Tax=Halomonas titanicae TaxID=664683 RepID=A0A653PZM6_9GAMM)

HSP 1 Score: 148 bits (374), Expect = 1.130e-44
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 2
Query:  113 LGPYLVLLRVGFTMPRTVTRRAVRSYRTLSPLPAPRGLGGLLSAALSVGSRRPGVTWHSALWSPDFPPPTPFEGH 337
            + PYLVLLRVGFTMPRTVTRRAVRSYRTLSPLPAP+GLGGLLSAALSVGSRRPGVTWHSALWSPDFPPPTPF+G+
Sbjct:    1 MDPYLVLLRVGFTMPRTVTRRAVRSYRTLSPLPAPKGLGGLLSAALSVGSRRPGVTWHSALWSPDFPPPTPFKGY 75          
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A5P9EH44_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter sp. THAF39 TaxID=2587857 RepID=A0A5P9EH44_9GAMM)

HSP 1 Score: 131 bits (329), Expect = 9.340e-37
Identity = 71/108 (65.74%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    1 EWGSRPISRVLSWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPF-TLTGPEGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSPN 321
            +  S PISRVLSWT I LG A PQ SSNLP  SAGHAIG LFGLAP GVYH      A    L  PF     P+ LRR T CCTFRRLAPPRRYLA CP EPGLSSP+
Sbjct:    8 KMASSPISRVLSWTVIHLGPASPQASSNLPESSAGHAIGFLFGLAPGGVYHRRGLLPATRCALTAPFHPYRRPKALRRYTFCCTFRRLAPPRRYLAPCPAEPGLSSPD 115          
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A1I1XHZ6_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter sp. DSM 26671 TaxID=1761793 RepID=A0A1I1XHZ6_9GAMM)

HSP 1 Score: 131 bits (330), Expect = 1.520e-36
Identity = 71/105 (67.62%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   10 SRPISRVLSWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPF-TLTGPEGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSPN 321
            S PISRVLSWT I LG+A PQ SSNLP  SAGHAIG LFGLAP GVYH      A    L  PF     P  LRR T CCTFRRLAPPRRYLA CP+EPGLSSP 
Sbjct:    9 SSPISRVLSWTVIHLGSASPQTSSNLPESSAGHAIGFLFGLAPGGVYHRRGLLPATRCALTAPFHPYRRPRALRRYTFCCTFRRLAPPRRYLAPCPVEPGLSSPG 113          
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A009NBC4_9GAMM (Uncharacterized protein n=1 Tax=Acinetobacter sp. 1475718 TaxID=1310652 RepID=A0A009NBC4_9GAMM)

HSP 1 Score: 129 bits (323), Expect = 2.240e-36
Identity = 68/100 (68.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   46 IPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPFTLTGPEGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSPNTF*GASAA 345
            IPLGA    RSS+LP  S G   G LFGLA  GVYHA +CYQ RGALLPHPFTLT    +RRSTLCCTFRRL+PPRRYLA CPM+PGLSSP +    S A
Sbjct:    3 IPLGAQSLIRSSDLPESSTGRTSGFLFGLASGGVYHAVNCYQTRGALLPHPFTLT--SRMRRSTLCCTFRRLSPPRRYLAPCPMKPGLSSPASVTKTSTA 100          
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A0U5F8Q8_XANCI (Uncharacterized protein n=1 Tax=Xanthomonas citri pv. citri TaxID=611301 RepID=A0A0U5F8Q8_XANCI)

HSP 1 Score: 130 bits (327), Expect = 7.770e-36
Identity = 73/128 (57.03%), Postives = 79/128 (61.72%), Query Frame = 3
Query:    9 ESADKPGSVVDSHSSRRCVTTALKQPTRTQRGPRHWVPIWSCSEWGLPCHAL-------------LPGARCALTAPFHPYRPRGA*AVYS-------------LLHFPSARAAQALPGTLPYGARTFL 314
            E ADKPGSVVDSHSSRR VT ALKQPTR QRGPR W+PIWSCS WGLPC ++             LP  R    A    +R   + A +S             LLHFPSA AAQALPGTLPYGARTFL
Sbjct:   44 EPADKPGSVVDSHSSRRYVTAALKQPTRIQRGPRQWIPIWSCSRWGLPCRSVTGLAVRSYRTISPLPAPRHPFAASERAWRCEASLARFSGGKGVTRDVGGIFLLHFPSACAAQALPGTLPYGARTFL 171          
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A7Z7J2H9_XANCH (Uncharacterized protein n=1 Tax=Xanthomonas campestris pv. phaseoli TaxID=317013 RepID=A0A7Z7J2H9_XANCH)

HSP 1 Score: 129 bits (324), Expect = 4.390e-35
Identity = 74/128 (57.81%), Postives = 79/128 (61.72%), Query Frame = 3
Query:    9 ESADKPGSVVDSHSSRRCVTTALKQPTRTQRGPRHWVPIWSCSEWGLPCHAL-------------LPGARCALTAPFHPYRPRGA*AVYS-------------LLHFPSARAAQALPGTLPYGARTFL 314
            E ADKPGSVVDSHSSRR VT ALKQPTR QRGPR W+PIWSCS WGLPC ++             LP  R  L A    +R   + A  S             LLHFPSA AAQALPGTLPYGARTFL
Sbjct:   33 EPADKPGSVVDSHSSRRYVTAALKQPTRIQRGPRQWIPIWSCSRWGLPCRSVTGLAVRSYRTISPLPAPRHPLAASGRTWRCDASLARSSGGKGVTRDVGGIFLLHFPSACAAQALPGTLPYGARTFL 160          
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A1T4TX09_9GAMM (Uncharacterized protein n=1 Tax=Enterovibrio nigricans DSM 22720 TaxID=1121868 RepID=A0A1T4TX09_9GAMM)

HSP 1 Score: 123 bits (308), Expect = 7.750e-34
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 1
Query:   10 SRPISRVL---SWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPFTLT-GP------EGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSP 318
            S P+SRVL   +   I LG      SSNLP P+AG A   LFGLAP GVY AT+CYQ+RGALLPHPFTLT  P       G RR  LCCT RRLAPPRRYLA CP+EPGLSSP
Sbjct:    2 SWPVSRVLYRKTAVTIRLGLQSLTGSSNLPVPNAGRANRDLFGLAPGGVYRATNCYQSRGALLPHPFTLTCAPYLLAEHRGHRRFALCCTGRRLAPPRRYLAPCPVEPGLSSP 114          
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A1T4N154_VIBCI (Uncharacterized protein n=1 Tax=Vibrio cincinnatiensis DSM 19608 TaxID=1123491 RepID=A0A1T4N154_VIBCI)

HSP 1 Score: 106 bits (265), Expect = 4.410e-28
Identity = 54/67 (80.60%), Postives = 57/67 (85.07%), Query Frame = 2
Query:  122 YLVLLRVGFTMPRTVTRRAVRSYRTLSPLPAPRG-LGGLLSAALSVGSRRPGVTWHSALWSPDFPPP 319
            YLVLLRV FT+ RTV RR VRSYRTLSPLP P+G +GGLLSAAL VG R PGVTWH ALWSPDFPPP
Sbjct:    4 YLVLLRVEFTLLRTVARRTVRSYRTLSPLPDPQGAIGGLLSAALVVGLRPPGVTWHPALWSPDFPPP 70          
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: A0A2U1D0A6_9GAMM (Uncharacterized protein n=1 Tax=Tamilnaduibacter salinus TaxID=1484056 RepID=A0A2U1D0A6_9GAMM)

HSP 1 Score: 110 bits (275), Expect = 1.600e-27
Identity = 63/106 (59.43%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   10 SRPISRVLSWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLP---HPFTLTGPEGLRRSTLCCTFRRLAPPRRYLALCPMEPGLSSP 318
            S P+SRVLS   I LG ALPQ SS+LP  SAG  +G LFGLAP GV H      A    L    HP+ +T   G  R   CCTFRRLAPPRRYLA CPMEPGLSSP
Sbjct:  115 SSPVSRVLSGATIHLGPALPQASSDLPESSAGRTVGLLFGLAPGGVCHRRGLLPATRCALTAPFHPYPITAVTG--RYPFCCTFRRLAPPRRYLAPCPMEPGLSSP 218          
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Match: UPI0019A348F6 (Uncharacterized protein n=1 Tax=Kushneria pakistanensis TaxID=1508770 RepID=UPI0019A348F6)

HSP 1 Score: 105 bits (263), Expect = 6.310e-27
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    7 GSRPISRVLSWTAIPLGAALPQRSSNLPGPSAGHAIGSLFGLAPSGVYHATHCYQARGALLPHPFTLT-GPEGL 225
            GSRP+SRVLS T IPLG + P  SSNLP P+AGH  G LFGLAP GVYHAT CYQARGALLPHPFTL  G E +
Sbjct:    8 GSRPVSRVLSRTVIPLGRSSPNASSNLPEPNAGHVNGFLFGLAPDGVYHATTCYQARGALLPHPFTLAVGTESI 81          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15513.3191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A653PZM6_9GAMM1.130e-4493.33Uncharacterized protein n=1 Tax=Halomonas titanica... [more]
A0A5P9EH44_9GAMM9.340e-3765.74Uncharacterized protein n=1 Tax=Marinobacter sp. T... [more]
A0A1I1XHZ6_9GAMM1.520e-3667.62Uncharacterized protein n=1 Tax=Marinobacter sp. D... [more]
A0A009NBC4_9GAMM2.240e-3668.00Uncharacterized protein n=1 Tax=Acinetobacter sp. ... [more]
A0A0U5F8Q8_XANCI7.770e-3657.03Uncharacterized protein n=1 Tax=Xanthomonas citri ... [more]
A0A7Z7J2H9_XANCH4.390e-3557.81Uncharacterized protein n=1 Tax=Xanthomonas campes... [more]
A0A1T4TX09_9GAMM7.750e-3463.72Uncharacterized protein n=1 Tax=Enterovibrio nigri... [more]
A0A1T4N154_VIBCI4.410e-2880.60Uncharacterized protein n=1 Tax=Vibrio cincinnatie... [more]
A0A2U1D0A6_9GAMM1.600e-2759.43Uncharacterized protein n=1 Tax=Tamilnaduibacter s... [more]
UPI0019A348F66.310e-2772.97Uncharacterized protein n=1 Tax=Kushneria pakistan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15513contigE-siliculosus-1a_F_contig15513:55..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size225
Model size347
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelGammaproteobacteria
EggNOG OGs1N4TE@1224,1S9K6@1236,2DMTH@1,32TKP@2
Seed eggNOG ortholog314287.GB2207_11628
Seed ortholog evalue7.5e-14
Seed ortholog score82.8
Taxonomic scopeBacteria
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15513.3191.1prot_E-siliculosus-1a_F_contig15513.3191.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15513 57..281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.635953-UTR-E-siliculosus-1a_F_contig15513:54..561622928064.635953-UTR-E-siliculosus-1a_F_contig15513:54..56Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15513 55..56 +
1696318792.527041-UTR-E-siliculosus-1a_F_contig15513:54..561696318792.527041-UTR-E-siliculosus-1a_F_contig15513:54..56Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15513 55..56 +
1622928064.6571045-UTR-E-siliculosus-1a_F_contig15513:281..4011622928064.6571045-UTR-E-siliculosus-1a_F_contig15513:281..401Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15513 282..401 +
1696318792.548456-UTR-E-siliculosus-1a_F_contig15513:281..4011696318792.548456-UTR-E-siliculosus-1a_F_contig15513:281..401Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15513 282..401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.6468635-CDS-E-siliculosus-1a_F_contig15513:56..2811622928064.6468635-CDS-E-siliculosus-1a_F_contig15513:56..281Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15513 57..281 +
1696318792.5397758-CDS-E-siliculosus-1a_F_contig15513:56..2811696318792.5397758-CDS-E-siliculosus-1a_F_contig15513:56..281Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15513 57..281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15513.3191.1

>prot_E-siliculosus-1a_F_contig15513.3191.1 ID=prot_E-siliculosus-1a_F_contig15513.3191.1|Name=mRNA_E-siliculosus-1a_F_contig15513.3191.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp
MGESADKPGSVVDSHSSRRCVTTALKQPTRTQRGPRHWVPIWSCSEWGLP
CHALLPGARCALTAPFHPYRPRGA*
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mRNA from alignment at E-siliculosus-1a_F_contig15513:55..401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15513.3191.1 ID=mRNA_E-siliculosus-1a_F_contig15513.3191.1|Name=mRNA_E-siliculosus-1a_F_contig15513.3191.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=347bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15513:55..401+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAATGGGGGAGTCGGCCGATAAGCCGGGTTCTGTCGTGGACAGCCATTCC TCTAGGCGCTGCGTTACCACAGCGCTCAAGCAACCTACCCGGACCCAGCG CGGGCCACGCCATTGGGTCCCTATTTGGTCTTGCTCCGAGTGGGGTTTAC CATGCCACGCACTGTTACCAGGCGCGCGGTGCGCTCTTACCGCACCCTTT CACCCTTACCGGCCCCGAGGGGCTTAGGCGGTCTACTCTCTGCTGCACTT TCCGTCGGCTCGCGCCGCCCAGGCGTTACCTGGCACTCTGCCCTATGGAG CCCGGACTTTCCTCCCCCAACACCTTTTGAGGGGCATCAGCGGCGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15513:55..401+

>mRNA_E-siliculosus-1a_F_contig15513.3191.1 ID=mRNA_E-siliculosus-1a_F_contig15513.3191.1|Name=mRNA_E-siliculosus-1a_F_contig15513.3191.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15513:55..401+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGGAGTCGGCCGATAAGCCGGGTTCTGTCGTGGACAGCCATTCCTC
TAGGCGCTGCGTTACCACAGCGCTCAAGCAACCTACCCGGACCCAGCGCG
GGCCACGCCATTGGGTCCCTATTTGGTCTTGCTCCGAGTGGGGTTTACCA
TGCCACGCACTGTTACCAGGCGCGCGGTGCGCTCTTACCGCACCCTTTCA
CCCTTACCGGCCCCGAGGGGCTTAGATGGGGGAGTCGGCCGATAAGCCGG
GTTCTGTCGTGGACAGCCATTCCTCTAGGCGCTGCGTTACCACAGCGCTC
AAGCAACCTACCCGGACCCAGCGCGGGCCACGCCATTGGGTCCCTATTTG
GTCTTGCTCCGAGTGGGGTTTACCATGCCACGCACTGTTACCAGGCGCGC
GGTGCGCTCTTACCGCACCCTTTCACCCTTACCGGCCCCGAGGGGCTTAG
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