mRNA_E-siliculosus-1a_F_contig1550.3185.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1550.3185.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 1004 bits (2595), Expect = 0.000e+0 Identity = 537/606 (88.61%), Postives = 548/606 (90.43%), Query Frame = 2
Query: 335 MSITPEDSSPAARVHASLHSLAAGSEIARSQDELMDAIGVVPPDVVVVRNILSSMREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEDKEYMVNARTKGMQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVIRATDAHGMTILHHAVNGNGNEQAAARSSTAARSQTAPPQEPLPSAGAGPGGSTQTEPPATAGERLATVTEGGGPVEGRASEEVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRARRTAARYLLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMGGKKGKTTRAANRSNQLYGQDGDIASQRNFPSKPPPYRSFVNTNPRTTGTHTMDADQTPAIRPAPLRTADAGGSPTSQRSKSSKSPVGSIWGDDEDAEGVV 2152
MSITPED+SPAA V ASLHSLAAGSEIARSQDELMDAI VVPPD+V VRNILS+MREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGE KE MVNAR KGMQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVIRATD QTAPP+E LPSAGAG GGSTQTEPP TAGE LATVTEGGGP EG ASEEVPFVLDPRLPVIQA LEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFE +FNAFRRD+HDEKIDLLLDPGVETSHAQTSLRRA NSQEGTPMAQLV+EKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWG AMSVKRDPE TNTRAR+TAA+Y LAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLM KGK TRA +RSNQLYGQD DIASQRNF SKPPPYRSFVNT+PRTTGTHTMDADQTPAIRPAPLRTADAGGSP SQRSKSSKSPVGSIWGDD DA GVV
Sbjct: 1 MSITPEDTSPAAHVRASLHSLAAGSEIARSQDELMDAIAVVPPDLVAVRNILSTMREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEVKENMVNARMKGMQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVIRATDXXXXXXXXXXXXXXXXXXXXXXXXXXDPLQTAPPKERLPSAGAGRGGSTQTEPPPTAGESLATVTEGGGPAEGLASEEVPFVLDPRLPVIQAVLEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMSRTKGKITRATDRSNQLYGQDDDIASQRNFHSKPPPYRSFVNTDPRTTGTHTMDADQTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGDA-GVV 605
BLAST of mRNA_E-siliculosus-1a_F_contig1550.3185.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI) HSP 1 Score: 858 bits (2217), Expect = 1.460e-303 Identity = 452/488 (92.62%), Postives = 458/488 (93.85%), Query Frame = 2
Query: 689 MQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVIRATDAHGMTILHHAVNGNGNEQAAARSSTAARSQTAPPQEPLPSAGAGPGGSTQTEPPATAGERLATVTEGGGPVEGRASEEVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRARRTAARYLLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMGGKKGKTTRAANRSNQLYGQDGDIASQRNFPSKPPPYRSFVNTNPRTTGTHTMDADQTPAIRPAPLRTADAGGSPTSQRSKSSKSPVGSIWGDDEDAEGVV 2152
MQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFR+VIRATDAHGMTILHHAVNGNGNEQA RSS TAPPQE LPSAGAG GST TEPP+TAGERLATVTEGGGPVEG+ SE+VPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDV+KRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRA PAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMGGKKGKTTRAANRSNQLYGQD DI SQRNFPSKPPPYRSFVNTNPRT GTHTMDA+QTPAIRPAPLRTADAGGSP SQRSKSSKSPVGSIWGDD DA GVV
Sbjct: 1 MQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFRDVIRATDAHGMTILHHAVNGNGNEQATTRSSXXXXXXTAPPQERLPSAGAGREGSTPTEPPSTAGERLATVTEGGGPVEGQESEDVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRAS----------PAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMGGKKGKTTRAANRSNQLYGQDDDIVSQRNFPSKPPPYRSFVNTNPRTAGTHTMDANQTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGDA-GVV 477
BLAST of mRNA_E-siliculosus-1a_F_contig1550.3185.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 183 bits (465), Expect = 2.940e-45 Identity = 151/492 (30.69%), Postives = 230/492 (46.75%), Query Frame = 2
Query: 521 VLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFM-----EGEDKEYMVNARTKGMQK---------------------------QLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPS-----QFREVIRATDAHGMTILHHAVNGNGNEQAAARSSTAARSQTAPPQEPLPS--AGAGPGGSTQTEPPAT----AGERLATVTEGGGPVEGRASEEVPFVLDPRL------------------PVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVK-RDPETTNTRARRTAARYLLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARA 1810
VL PS +HK+RTPLMAAAATG + L A + E E + + N +GM L++ D + MTLLMHA S + +FQ + ++ + RE++ D+ G+ +L HA + A +S ++T PP +P S GP S++++ A+ G + G V G A+++ ++ + PV + A+ LW E + L+A D W RS++ HA++SG +FEA + A R + DE + +++ E T + A+ ++ T M +L + LK DV R ST+ AKI+ FIPG L+V+FQLLLP+ E L LL ++C +AP SV D + T +AR LL PAMFFWGVGTS + + W+ S SA ++A AT+ IPA+D++F+ R A A
Sbjct: 91 VLTTPSLLAKHKMRTPLMAAAATGDLATCTATLQALNQQYSNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNTEALATLELHDHKHMTLLMHAASNGPAPIFQEAQQAMRKAFGGDEDLREMMVERDSDGLNLLMHAAS------CCAPASALVPAET-PPVDPDSSHKKDGGPAESSRSKGTASKTALTGGGTSPADASSGAVAGDAAKDKKTAVEKTVEADTKEEKGVNKRDAVVVPVFKVAVRLVTRCLWTDEVLQQLKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETN-EGEREDTPMIDAL-ARGNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQ--LILLYIMCALAPLVKLATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASA 571
BLAST of mRNA_E-siliculosus-1a_F_contig1550.3185.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 164 bits (414), Expect = 4.210e-38 Identity = 145/511 (28.38%), Postives = 217/511 (42.47%), Query Frame = 2
Query: 524 LLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEDKEYMVNARTKGMQKQLDMVDVEGMTLLMHACSTSS-------------------------------------SAVF----------------------------------------------QALSKTVQPSQFREVIRATDAHGMTILHHAVNGNGNEQAAARSSTAARSQTAPPQEPLPSAGAGPGGSTQTEPPATAGERLATVTEGGGPVE--GRASEEVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRARRTAARYLLAIPAMFFWGVGTSKIA-PNSFNWAESASAAALAVATIVIPALDTYFSGR 1798
+L PS S H++RTPLMAAAATG + + VL A E + ++ R +KQL+ +D GMTLLM A + + SAVF A + + PS+ R++++ D+ G+T L HA++ A ++ G G + +VLDP + V+++AL E R+ L+A D W R+I HA+++ R ++F+AVF A R + D++I L+ G+ ++ MA V + LK ++ + ST+ +KIQ+FIPG LIVIFQLLLPE S L LL+++ IAP SW A + + P +T R R+ L+ PAMFFWG+GTS + + W +SA+AAALAVATI+IPA+D +F+ R
Sbjct: 99 VLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRMETNRISLR----KKQLEYMDESGMTLLMLAARSGNVGILEAVVERVRIAPEXXXXXXXXXXXXXXXXXXXXXSAVFTVILNELQRCYKDNVEEQLLASSADDRTILMHAARCGDQMGVLSVSHACQRFIMPSRLRKLVKQVDSEGVTFLMHAISATSFHTGAPTATXXXXXXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAPRDEWVLDPGMAVLKSALALVE------EVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALM--GINKEDKSDTVMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEVGSSDK--LTLLIIMSAIAPGLSWAAGLVAREKPGSTEKR--RSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSR 593
BLAST of mRNA_E-siliculosus-1a_F_contig1550.3185.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 7.470e-7 Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 2
Query: 524 LLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEDKEYMVNARTKGMQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVIRATDAHGMTILHHA 862
+L PS S H++RTPLMAAAATG + + VL A E + ++ R +KQL+ VD GMTLLM A + S + +A+ + V+ + E + D T+L HA
Sbjct: 56 VLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAIGEQRMETNRISLR----RKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLLDRDHSATTVLMHA 164 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1550.3185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1550.3185.1 >prot_E-siliculosus-1a_F_contig1550.3185.1 ID=prot_E-siliculosus-1a_F_contig1550.3185.1|Name=mRNA_E-siliculosus-1a_F_contig1550.3185.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=607bp MSITPEDSSPAARVHASLHSLAAGSEIARSQDELMDAIGVVPPDVVVVRNback to top mRNA from alignment at E-siliculosus-1a_F_contig1550:16282..29272- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1550.3185.1 ID=mRNA_E-siliculosus-1a_F_contig1550.3185.1|Name=mRNA_E-siliculosus-1a_F_contig1550.3185.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=12991bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1550:16282..29272- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1550:16282..29272- >mRNA_E-siliculosus-1a_F_contig1550.3185.1 ID=mRNA_E-siliculosus-1a_F_contig1550.3185.1|Name=mRNA_E-siliculosus-1a_F_contig1550.3185.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1550:16282..29272- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |