mRNA_E-siliculosus-1a_F_contig155.3183.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig155.3183.1
Unique NamemRNA_E-siliculosus-1a_F_contig155.3183.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: A0A7S1NPW1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NPW1_9EUGL)

HSP 1 Score: 174 bits (441), Expect = 3.330e-51
Identity = 76/105 (72.38%), Postives = 88/105 (83.81%), Query Frame = 1
Query:  262 KAPRPKRNQQGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYR-DQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIK 573
            + P PKRN  GELVFPD+P+FRPNL+PK+VL+MGSFGGTYFR IKS VTGKTY  DQWKEFPADWFEGL++  ++ S TY   VNTY V+CGGDL+MWESSGWI 
Sbjct:   60 RMPIPKRNANGELVFPDYPEFRPNLTPKEVLQMGSFGGTYFRSIKSGVTGKTYAADQWKEFPADWFEGLNINAKITSQTYREQVNTYKVNCGGDLYMWESSGWIN 164          
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: D8LR27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR27_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 6.290e-49
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1
Query:  358 MGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIK 573
            MGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLN+VNTYGVHCGGDLHMWESSGWIK
Sbjct:    1 MGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNAVNTYGVHCGGDLHMWESSGWIK 72          
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: W5NBZ2_LEPOC (Uncharacterized LOC102683593 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5NBZ2_LEPOC)

HSP 1 Score: 159 bits (402), Expect = 1.610e-46
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 1
Query:  241 EGTSASGKAPRPKRNQQGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWI 570
            E    S  A  P++N +G+LVF DFP F PN++PK+VL+ GSFGGTYFRPI SS+T ++Y+D WKE P DW EGLD+ +QVASPTY  +VNTY V CGG L MWESSGWI
Sbjct:   40 EARGCSSNALLPEKNNKGQLVFKDFPTFGPNMTPKEVLQAGSFGGTYFRPIYSSITKQSYKDVWKELPVDWLEGLDIPKQVASPTYRENVNTYKVKCGGSLEMWESSGWI 149          
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: UPI001E1DF070 (uncharacterized protein LOC123552860 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF070)

HSP 1 Score: 162 bits (409), Expect = 3.830e-46
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 1
Query:  268 PRPKRNQQGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWI 570
            P PKRN +G+LVFPD P+ RPN++PK+VL+ GSFGGTYFRPIKSSVTGK+Y   WKE P DW EGL++ +QV+S TY   VNTYGV CGG L MWE SGWI
Sbjct:   81 PLPKRNAKGQLVFPDHPELRPNMTPKEVLQAGSFGGTYFRPIKSSVTGKSYTQVWKELPKDWLEGLNIGKQVSSSTYDEKVNTYGVKCGGSLEMWEESGWI 181          
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: A0A7M7T340_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7T340_STRPU)

HSP 1 Score: 161 bits (407), Expect = 6.680e-46
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 1
Query:  268 PRPKRNQQGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWI 570
            P PKRN +GELVF D+P+ RPN+SPK+VL+ GSFGGTYFRPIKSSVTG+ Y   WKE P +W EGLD+ RQVAS  YL  VNTY V CGG L MWESSGWI
Sbjct:   81 PLPKRNAKGELVFSDYPEMRPNMSPKEVLQAGSFGGTYFRPIKSSVTGEKYSGVWKELPKNWLEGLDIPRQVASSPYLAEVNTYKVKCGGSLEMWESSGWI 181          
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: A0A6P8ISI2_ACTTE (uncharacterized protein LOC116304540 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8ISI2_ACTTE)

HSP 1 Score: 160 bits (405), Expect = 8.830e-46
Identity = 66/98 (67.35%), Postives = 83/98 (84.69%), Query Frame = 1
Query:  277 KRNQQGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWI 570
            KR++ G+LVFPD+P+F+PNL+PK+VL+ GSFGGTY+RPIKSSVTG+ Y  +WKEFP+DWF+GL + +QV+S TY   VNTY V CGG L MWESSGWI
Sbjct:   67 KRDKHGKLVFPDYPEFKPNLTPKEVLQAGSFGGTYYRPIKSSVTGEKYSGEWKEFPSDWFDGLSINKQVSSSTYHIDVNTYNVKCGGSLEMWESSGWI 164          
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: A0A2G8KVN9_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KVN9_STIJA)

HSP 1 Score: 160 bits (404), Expect = 1.320e-45
Identity = 70/103 (67.96%), Postives = 79/103 (76.70%), Query Frame = 1
Query:  265 APRPKRNQQGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIK 573
            AP PKRN +GELVFPD P+  PNL+P++VL+ GSFGGTYFRPIKS VTG+ Y   WKE P DW EGL + +QVAS TY   VNTYGV CGG L MWESSGWI 
Sbjct:   67 APLPKRNAKGELVFPDAPEMSPNLTPREVLQAGSFGGTYFRPIKSGVTGEKYSGVWKELPKDWLEGLSIPKQVASSTYHADVNTYGVKCGGSLEMWESSGWIN 169          
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: A0A1W0E686_9MICR (Uncharacterized protein n=1 Tax=Enterocytozoon hepatopenaei TaxID=646526 RepID=A0A1W0E686_9MICR)

HSP 1 Score: 159 bits (401), Expect = 2.190e-45
Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = 1
Query:  280 RNQQGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIK 573
            R++ G++VF D+P F+PNL+PK+VL++GSFGGTYFRPI+SS+T K+YRD WKEFP+DWFEGL++ ++V S TY N VN Y V CGG L MWE SGWIK
Sbjct:   51 RDKDGKIVFDDYPDFKPNLTPKEVLQLGSFGGTYFRPIESSITNKSYRDVWKEFPSDWFEGLNITKEVTSLTYYNDVNKYKVKCGGSLQMWEESGWIK 148          
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: UPI0010A44F60 (uncharacterized protein LOC114791975 isoform X3 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=UPI0010A44F60)

HSP 1 Score: 158 bits (400), Expect = 3.770e-45
Identity = 67/104 (64.42%), Postives = 82/104 (78.85%), Query Frame = 1
Query:  259 GKAPRPKRNQQGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWI 570
            G++   K+N++G+LVF DFP F+PN++PK+VL+ GSFGGTYFRPI SS+T + Y+  WKE P DW EGLD+ RQVASPTY   VNTY V CGG L MWESSGWI
Sbjct:   83 GRSSAVKKNEKGQLVFKDFPDFKPNMTPKEVLQAGSFGGTYFRPIYSSITKQQYKGVWKELPEDWLEGLDINRQVASPTYREGVNTYKVKCGGSLQMWESSGWI 186          
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Match: A0A8C4B3D7_9TELE (Uncharacterized LOC114791975 n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4B3D7_9TELE)

HSP 1 Score: 158 bits (400), Expect = 9.070e-45
Identity = 67/104 (64.42%), Postives = 82/104 (78.85%), Query Frame = 1
Query:  259 GKAPRPKRNQQGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWI 570
            G++   K+N++G+LVF DFP F+PN++PK+VL+ GSFGGTYFRPI SS+T + Y+  WKE P DW EGLD+ RQVASPTY   VNTY V CGG L MWESSGWI
Sbjct:   83 GRSSAVKKNEKGQLVFKDFPDFKPNMTPKEVLQAGSFGGTYFRPIYSSITKQQYKGVWKELPEDWLEGLDINRQVASPTYREGVNTYKVKCGGSLQMWESSGWI 186          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig155.3183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1NPW1_9EUGL3.330e-5172.38Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
D8LR27_ECTSI6.290e-4998.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W5NBZ2_LEPOC1.610e-4662.73Uncharacterized LOC102683593 n=2 Tax=Lepisosteus o... [more]
UPI001E1DF0703.830e-4668.32uncharacterized protein LOC123552860 n=1 Tax=Merce... [more]
A0A7M7T340_STRPU6.680e-4670.30Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A6P8ISI2_ACTTE8.830e-4667.35uncharacterized protein LOC116304540 n=2 Tax=Actin... [more]
A0A2G8KVN9_STIJA1.320e-4567.96Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A1W0E686_9MICR2.190e-4565.31Uncharacterized protein n=1 Tax=Enterocytozoon hep... [more]
UPI0010A44F603.770e-4564.42uncharacterized protein LOC114791975 isoform X3 n=... [more]
A0A8C4B3D7_9TELE9.070e-4564.42Uncharacterized LOC114791975 n=2 Tax=Denticeps clu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig155contigE-siliculosus-1a_F_contig155:77703..78497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size576
Model size576
Exons2
Ec32 orthologEc-06_004600.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2AUXR@1,2RZV2@2759
Seed eggNOG ortholog2880.D8LR27
Seed ortholog evalue8.5e-38
Seed ortholog score163.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928063.48165-CDS-E-siliculosus-1a_F_contig155:77702..781501622928063.48165-CDS-E-siliculosus-1a_F_contig155:77702..78150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig155 77703..78150 +
1696318791.9490776-CDS-E-siliculosus-1a_F_contig155:77702..781501696318791.9490776-CDS-E-siliculosus-1a_F_contig155:77702..78150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig155 77703..78150 +
1622928063.4979384-CDS-E-siliculosus-1a_F_contig155:78369..784971622928063.4979384-CDS-E-siliculosus-1a_F_contig155:78369..78497Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig155 78370..78497 +
1696318791.9595585-CDS-E-siliculosus-1a_F_contig155:78369..784971696318791.9595585-CDS-E-siliculosus-1a_F_contig155:78369..78497Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig155 78370..78497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig155.3183.1prot_E-siliculosus-1a_F_contig155.3183.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig155 77703..78497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig155.3183.1

>prot_E-siliculosus-1a_F_contig155.3183.1 ID=prot_E-siliculosus-1a_F_contig155.3183.1|Name=mRNA_E-siliculosus-1a_F_contig155.3183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=192bp
MPPKRRKADEAATAAAATASKKPRKTLSSGSSRSSGGTSKSAAGKAKAGA
KGKAKPAKKPDADRKASSPTTSSAGTNDKGEGTSASGKAPRPKRNQQGEL
VFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPAD
WFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIK*
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mRNA from alignment at E-siliculosus-1a_F_contig155:77703..78497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig155.3183.1 ID=mRNA_E-siliculosus-1a_F_contig155.3183.1|Name=mRNA_E-siliculosus-1a_F_contig155.3183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=795bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig155:77703..78497+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTCCAAAGCGGAGAAAAGCGGACGAAGCAGCAACAGCAGCAGCAGC AACAGCCTCGAAGAAGCCTCGAAAAACGTTGAGCAGCGGCAGCAGCAGGA GCAGCGGTGGTACCTCAAAGAGTGCCGCAGGGAAGGCAAAAGCAGGGGCC AAAGGAAAGGCGAAGCCTGCCAAAAAGCCTGATGCTGACCGCAAAGCGTC GTCTCCCACAACATCTTCGGCTGGTACTAATGACAAAGGTGAAGGTACGA GTGCTTCTGGGAAGGCCCCGCGCCCGAAGAGAAACCAACAAGGGGAGCTG GTCTTTCCTGATTTCCCCAAGTTTCGACCGAACTTGTCGCCCAAGCAAGT TCTTCGCATGGGGTCTTTCGGCGGAACGTACTTCAGGCCGATCAAGTCTT CGGTAACTGGAAAGACGTACCGCGACCAGTGGAAGGAGTTTCCCGCGGGT AAGTTGCCGCAGCATCCACGGCGAGTGAGACTCCTTGAAGAGACAAACAA GATAATTTGTTACTGTGACGTACTGACCGCACACTACCGATCTGAATCAG AGCTGTGTAGCCGTGGTGTTCGCAAGTCTTGCAGTTTTCACAACAAGATT ACGTGCAATCCAAGTGTTCCCTTTTCGATCGCGCGTGTCTCGATGACCTT CGGATGTGCTACCATAGACTGGTTCGAGGGATTGGACGTCAAGAGGCAGG TGGCCAGTCCCACCTACTTGAACTCTGTCAACACGTACGGCGTCCACTGT GGTGGGGACTTGCACATGTGGGAGTCGAGCGGATGGATAAAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig155:77703..78497+

>mRNA_E-siliculosus-1a_F_contig155.3183.1 ID=mRNA_E-siliculosus-1a_F_contig155.3183.1|Name=mRNA_E-siliculosus-1a_F_contig155.3183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig155:77703..78497+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTCCAAAGCGGAGAAAAGCGGACGAAGCAGCAACAGCAGCAGCAGC
AACAGCCTCGAAGAAGCCTCGAAAAACGTTGAGCAGCGGCAGCAGCAGGA
GCAGCGGTGGTACCTCAAAGAGTGCCGCAGGGAAGGCAAAAGCAGGGGCC
AAAGGAAAGGCGAAGCCTGCCAAAAAGCCTGATGCTGACCGCAAAGCGTC
GTCTCCCACAACATCTTCGGCTGGTACTAATGACAAAGGTGAAGGTACGA
GTGCTTCTGGGAAGGCCCCGCGCCCGAAGAGAAACCAACAAGGGGAGCTG
GTCTTTCCTGATTTCCCCAAGTTTCGACCGAACTTGTCGCCCAAGCAAGT
TCTTCGCATGGGGTCTTTCGGCGGAACGTACTTCAGGCCGATCAAGTCTT
CGGTAACTGGAAAGACGTACCGCGACCAGTGGAAGGAGTTTCCCGCGGAT
GCCTCCAAAGCGGAGAAAAGCGGACGAAGCAGCAACAGCAGCAGCAGCAA
CAGCCTCGAAGAAGCCTCGAAAAACGTTGAGCAGCGGCAGCAGCAGGAGC
AGCGGTGGTACCTCAAAGAGTGCCGCAGGGAAGGCAAAAGCAGGGGCCAA
AGGAAAGGCGAAGCCTGCCAAAAAGCCTGATGCTGACCGCAAAGCGTCGT
CTCCCACAACATCTTCGGCTGGTACTAATGACAAAGGTGAAGGTACGAGT
GCTTCTGGGAAGGCCCCGCGCCCGAAGAGAAACCAACAAGGGGAGCTGGT
CTTTCCTGATTTCCCCAAGTTTCGACCGAACTTGTCGCCCAAGCAAGTTC
TTCGCATGGGGTCTTTCGGCGGAACGTACTTCAGGCCGATCAAGTCTTCG
GTAACTGGAAAGACGTACCGCGACCAGTGGAAGGAGTTTCCCGCGGACTG
GTTCGAGGGATTGGACGTCAAGAGGCAGGTGGCCAGTCCCACCTACTTGA
ACTCTGTCAACACGTACGGCGTCCACTGTGGTGGGGACTTGCACATGTGG
GAGTCGAGCGGATGGATAAAGTGAACTGGTTCGAGGGATTGGACGTCAAG
AGGCAGGTGGCCAGTCCCACCTACTTGAACTCTGTCAACACGTACGGCGT
CCACTGTGGTGGGGACTTGCACATGTGGGAGTCGAGCGGATGGATAAAGT
GA
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