mRNA_E-siliculosus-1a_F_contig15434.3152.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15434.3152.1
Unique NamemRNA_E-siliculosus-1a_F_contig15434.3152.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A2A4HJQ3_9GAMM (Redox-sensitive transcriptional activator SoxR n=3 Tax=Halomonas TaxID=2745 RepID=A0A2A4HJQ3_9GAMM)

HSP 1 Score: 233 bits (593), Expect = 6.240e-77
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 1
Query:    1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDPN 357
            RGMIKSRRNVSGHRRYARDVLRR+AIIKVAQRVGIPLEEIAEALS LHDG TPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAE GPGARLFDPN
Sbjct:   33 RGMIKSRRNVSGHRRYARDVLRRLAIIKVAQRVGIPLEEIAEALSTLHDGCTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEVGPGARLFDPN 151          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A1H8TDT0_9GAMM (Redox-sensitive transcriptional activator SoxR n=1 Tax=Aquisalimonas asiatica TaxID=406100 RepID=A0A1H8TDT0_9GAMM)

HSP 1 Score: 197 bits (502), Expect = 4.910e-63
Identity = 92/119 (77.31%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDPN 357
            RG+I+S RN SGHRRYARD LRRVA+IK AQR+GIPL+EIA+ALS L +G TP+ASDWRQLSDAWR  L +RIDKL KLRD+LD CIGCGCLSL+SCPLRNP+D+AA+AGPGARLFDP+
Sbjct:   35 RGLIRSTRNASGHRRYARDTLRRVAVIKAAQRIGIPLDEIADALSTLPEGRTPTASDWRQLSDAWRAQLDERIDKLCKLRDQLDDCIGCGCLSLESCPLRNPSDVAAQAGPGARLFDPD 153          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A1H8UJJ9_9GAMM (Redox-sensitive transcriptional activator SoxR n=1 Tax=Aquisalimonas asiatica TaxID=406100 RepID=A0A1H8UJJ9_9GAMM)

HSP 1 Score: 182 bits (461), Expect = 9.480e-57
Identity = 86/117 (73.50%), Postives = 101/117 (86.32%), Query Frame = 1
Query:    1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFD 351
            +G+I S RN  G RR+ R VLRRVA+IK AQR+GIPL EIAEAL+AL DG +P+A+DW++LSD WR NL++RIDKL KLRD+LDGCIGCGCLSL+SCPLRNP DIAAE GPGARLFD
Sbjct:   37 KGLISSWRNSGGQRRFPRSVLRRVAVIKAAQRIGIPLSEIAEALAALPDGRSPTAADWQRLSDRWRANLNERIDKLIKLRDDLDGCIGCGCLSLESCPLRNPGDIAAEGGPGARLFD 153          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: U2FTE4_9GAMM (Redox-sensitive transcriptional activator SoxR n=1 Tax=Salinisphaera shabanensis E1L3A TaxID=1033802 RepID=U2FTE4_9GAMM)

HSP 1 Score: 173 bits (439), Expect = 2.560e-53
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDPN 357
            +G+I SRRN    RRY RDVLR V++IKVAQRVGIPL EI EAL+ L +   PSA DWR+LSD W+  L +RID L KLRD+LDGCIGCGCLSL++CPLRNP DIAA+AGPGARLFDP+
Sbjct:   35 KGLISSRRNTGNQRRYTRDVLRVVSLIKVAQRVGIPLAEIGEALATLPERRAPSADDWRRLSDHWKNRLEERIDHLVKLRDQLDGCIGCGCLSLEACPLRNPDDIAAQAGPGARLFDPH 153          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A2E9AP16_9GAMM (Redox-sensitive transcriptional activator SoxR n=1 Tax=Salinisphaera sp. TaxID=1914330 RepID=A0A2E9AP16_9GAMM)

HSP 1 Score: 173 bits (439), Expect = 2.560e-53
Identity = 81/117 (69.23%), Postives = 98/117 (83.76%), Query Frame = 1
Query:    1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFD 351
            +G+I+SRRN    RRY+RDVLR VA+IK AQRVGIPL +I +AL+ L DG  PSA DWR+LSD W+  L +RI +L+KLRD+LDGCIGCGCLSL++CPLRNP DIAA+AGPGARLFD
Sbjct:   35 KGLIRSRRNAGNQRRYSRDVLRVVALIKAAQRVGIPLADIGQALATLPDGRAPSAEDWRRLSDGWKNQLEERIAQLTKLRDQLDGCIGCGCLSLQACPLRNPDDIAAQAGPGARLFD 151          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: W1N1X6_9GAMM (Redox-sensitive transcriptional activator SoxR n=2 Tax=Halomonas TaxID=2745 RepID=W1N1X6_9GAMM)

HSP 1 Score: 169 bits (429), Expect = 6.390e-52
Identity = 79/118 (66.95%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDP 354
            RG+I S RN    RRY+RDVLRRVA+IK+AQR+GIPL EI +AL+ L +   PSA +W Q+SD W+ +L++RIDKL+KLRD+LDGCIGCGCLSL SCPLRNP DIA+E GPG R+FDP
Sbjct:   35 RGLIHSWRNAGNQRRYSRDVLRRVAVIKIAQRLGIPLAEIHDALAVLPEKRAPSAGEWHQISDRWKDDLNERIDKLTKLRDQLDGCIGCGCLSLSSCPLRNPDDIASEDGPGPRMFDP 152          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A7V7KTY4_9PSED (Redox-sensitive transcriptional activator SoxR n=1 Tax=Pseudomonas laoshanensis TaxID=2268758 RepID=A0A7V7KTY4_9PSED)

HSP 1 Score: 166 bits (420), Expect = 1.450e-50
Identity = 80/117 (68.38%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFD 351
            +G+IKS RN  G R Y RD LRRVAIIK AQR+GIPL +IA+ALSAL D  TP+A+DWR+LS  W+  L++RI++L KLRD LDGCIGCGCLS+ +CPLRNP D AA AGPGARLFD
Sbjct:   35 KGLIKSMRNAGGQRLYRRDELRRVAIIKAAQRLGIPLTDIAQALSALPDNRTPTAADWRKLSSRWQQQLNERIEQLLKLRDALDGCIGCGCLSMTACPLRNPGDEAATAGPGARLFD 151          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: S2L682_HALAF (Redox-sensitive transcriptional activator SoxR n=2 Tax=Halomonas TaxID=2745 RepID=S2L682_HALAF)

HSP 1 Score: 162 bits (410), Expect = 4.970e-49
Identity = 78/118 (66.10%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDP 354
            +G+IKSRRN    RRY RDVLRRVAIIKVAQR GIPL  I EAL  L DG TP++ DWR LS  W+  L DRI++L+KLR++L GCIGCGCLSL  CPLRNP D  +E GPG RL DP
Sbjct:   35 KGLIKSRRNAGNQRRYTRDVLRRVAIIKVAQRTGIPLASIREALHTLPDGRTPNSEDWRHLSAQWKAELDDRIERLTKLRNQLSGCIGCGCLSLDDCPLRNPWDELSEEGPGPRLLDP 152          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: UPI00193BC90B (Redox-sensitive transcriptional activator SoxR n=2 Tax=Archangium violaceum TaxID=83451 RepID=UPI00193BC90B)

HSP 1 Score: 162 bits (409), Expect = 7.500e-49
Identity = 78/118 (66.10%), Postives = 91/118 (77.12%), Query Frame = 1
Query:    4 GMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDPN 357
            G+I   RN   HRRYARDVLRRVAIIKVAQR GIPL  I EALS+L DG TP+A DW +LS +WR  L  RI +L++LRD+LDGCIGCGCLSL +CPLRNP D  ++ GPG RL DP+
Sbjct:   36 GLISGWRNSGNHRRYARDVLRRVAIIKVAQRAGIPLATIREALSSLPDGRTPTAEDWARLSASWRAELDGRIQRLTRLRDQLDGCIGCGCLSLNACPLRNPWDELSDEGPGPRLLDPD 153          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A7W5J7U1_9GAMM (Redox-sensitive transcriptional activator SoxR n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A7W5J7U1_9GAMM)

HSP 1 Score: 161 bits (407), Expect = 1.710e-48
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1
Query:    1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDP 354
            +G+I S RN    RRY R+VLRRVAIIKVAQR GIPL EI EALS+L +G TP+A+DWR+LS  W+ +L DRI++L++LRD +D CIGCGCLSLK CPLRNP D  A+ GPG RL DP
Sbjct:   42 KGLIHSWRNAGNQRRYPREVLRRVAIIKVAQRTGIPLAEIREALSSLPEGRTPTAADWRKLSARWQADLDDRIERLTRLRDHMDSCIGCGCLSLKVCPLRNPLDELADEGPGPRLLDP 159          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A4HJQ3_9GAMM6.240e-7796.64Redox-sensitive transcriptional activator SoxR n=3... [more]
A0A1H8TDT0_9GAMM4.910e-6377.31Redox-sensitive transcriptional activator SoxR n=1... [more]
A0A1H8UJJ9_9GAMM9.480e-5773.50Redox-sensitive transcriptional activator SoxR n=1... [more]
U2FTE4_9GAMM2.560e-5369.75Redox-sensitive transcriptional activator SoxR n=1... [more]
A0A2E9AP16_9GAMM2.560e-5369.23Redox-sensitive transcriptional activator SoxR n=1... [more]
W1N1X6_9GAMM6.390e-5266.95Redox-sensitive transcriptional activator SoxR n=2... [more]
A0A7V7KTY4_9PSED1.450e-5068.38Redox-sensitive transcriptional activator SoxR n=1... [more]
S2L682_HALAF4.970e-4966.10Redox-sensitive transcriptional activator SoxR n=2... [more]
UPI00193BC90B7.500e-4966.10Redox-sensitive transcriptional activator SoxR n=2... [more]
A0A7W5J7U1_9GAMM1.710e-4865.25Redox-sensitive transcriptional activator SoxR n=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15434contigE-siliculosus-1a_F_contig15434:608..967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size354
Model size360
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03000
Best eggNOG OGNA|NA|NA
Best tax levelGammaproteobacteria
COG Functional cat.K
EggNOG OGs1RH2U@1224,1S6M0@1236,COG0789@1,COG0789@2
EggNOG free text desc.redox-sensitive transcriptional activator SoxR
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0044424,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051537,GO:0051540
KEGG koko:K13639
Preferred namesoxR
Seed eggNOG ortholog1033802.SSPSH_003524
Seed ortholog evalue2.5e-40
Seed ortholog score171.4
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928052.6332204-CDS-E-siliculosus-1a_F_contig15434:607..9611622928052.6332204-CDS-E-siliculosus-1a_F_contig15434:607..961Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15434 608..961 -
1696318788.7477796-CDS-E-siliculosus-1a_F_contig15434:607..9611696318788.7477796-CDS-E-siliculosus-1a_F_contig15434:607..961Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15434 608..961 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928052.647583-UTR-E-siliculosus-1a_F_contig15434:961..9671622928052.647583-UTR-E-siliculosus-1a_F_contig15434:961..967Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15434 962..967 -
1696318788.7599552-UTR-E-siliculosus-1a_F_contig15434:961..9671696318788.7599552-UTR-E-siliculosus-1a_F_contig15434:961..967Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15434 962..967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15434.3152.1prot_E-siliculosus-1a_F_contig15434.3152.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15434 608..961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15434.3152.1

>prot_E-siliculosus-1a_F_contig15434.3152.1 ID=prot_E-siliculosus-1a_F_contig15434.3152.1|Name=mRNA_E-siliculosus-1a_F_contig15434.3152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
MIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGT
PSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNP
ADIAAEAGPGARLFDPN*
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mRNA from alignment at E-siliculosus-1a_F_contig15434:608..967-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15434.3152.1 ID=mRNA_E-siliculosus-1a_F_contig15434.3152.1|Name=mRNA_E-siliculosus-1a_F_contig15434.3152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15434:608..967- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGGGATGATCAAGAGCCGCCGTAACGTCAGCGGGCATCGGCGCTATGC GCGGGACGTACTCAGAAGAGTGGCTATCATCAAGGTGGCCCAGCGAGTCG GCATCCCTCTGGAGGAAATCGCTGAGGCACTGTCGGCGTTACATGATGGC GGCACACCCAGCGCATCCGACTGGCGGCAGCTGTCGGATGCGTGGCGCAC GAACCTGAGCGACCGCATTGACAAGCTGAGCAAGCTCCGCGACGAGCTTG ATGGCTGCATTGGGTGTGGCTGCCTGTCGCTGAAGAGCTGCCCTTTGCGC AACCCCGCCGACATTGCAGCAGAAGCCGGCCCAGGAGCGCGGCTGTTCGA CCCAAACTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15434:608..967-

>mRNA_E-siliculosus-1a_F_contig15434.3152.1 ID=mRNA_E-siliculosus-1a_F_contig15434.3152.1|Name=mRNA_E-siliculosus-1a_F_contig15434.3152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15434:608..967- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCAAGAGCCGCCGTAACGTCAGCGGGCATCGGCGCTATGCGCGGGA
CGTACTCAGAAGAGTGGCTATCATCAAGGTGGCCCAGCGAGTCGGCATCC
CTCTGGAGGAAATCGCTGAGGCACTGTCGGCGTTACATGATGGCGGCACA
CCCAGCGCATCCGACTGGCGGCAGCTGTCGGATGCGTGGCGCACGAACCT
GAGCGACCGCATTGACAAGCTGAGCAAGCTCCGCGACGAGCTTGATGGCT
GCATTGGGTGTGGCTGCCTGTCGCTGAAGAGCTGCCCTTTGCGCAACCCC
GCCGACATTGCAGCAGAAGCCGGCCCAGGAGCGCGGCTGTTCGACCCAAA
CTGAATGATCAAGAGCCGCCGTAACGTCAGCGGGCATCGGCGCTATGCGC
GGGACGTACTCAGAAGAGTGGCTATCATCAAGGTGGCCCAGCGAGTCGGC
ATCCCTCTGGAGGAAATCGCTGAGGCACTGTCGGCGTTACATGATGGCGG
CACACCCAGCGCATCCGACTGGCGGCAGCTGTCGGATGCGTGGCGCACGA
ACCTGAGCGACCGCATTGACAAGCTGAGCAAGCTCCGCGACGAGCTTGAT
GGCTGCATTGGGTGTGGCTGCCTGTCGCTGAAGAGCTGCCCTTTGCGCAA
CCCCGCCGACATTGCAGCAGAAGCCGGCCCAGGAGCGCGGCTGTTCGACC
CAAACTGA
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