mRNA_E-siliculosus-1a_F_contig15434.3152.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A2A4HJQ3_9GAMM (Redox-sensitive transcriptional activator SoxR n=3 Tax=Halomonas TaxID=2745 RepID=A0A2A4HJQ3_9GAMM) HSP 1 Score: 233 bits (593), Expect = 6.240e-77 Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDPN 357
RGMIKSRRNVSGHRRYARDVLRR+AIIKVAQRVGIPLEEIAEALS LHDG TPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAE GPGARLFDPN
Sbjct: 33 RGMIKSRRNVSGHRRYARDVLRRLAIIKVAQRVGIPLEEIAEALSTLHDGCTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEVGPGARLFDPN 151
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A1H8TDT0_9GAMM (Redox-sensitive transcriptional activator SoxR n=1 Tax=Aquisalimonas asiatica TaxID=406100 RepID=A0A1H8TDT0_9GAMM) HSP 1 Score: 197 bits (502), Expect = 4.910e-63 Identity = 92/119 (77.31%), Postives = 107/119 (89.92%), Query Frame = 1
Query: 1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDPN 357
RG+I+S RN SGHRRYARD LRRVA+IK AQR+GIPL+EIA+ALS L +G TP+ASDWRQLSDAWR L +RIDKL KLRD+LD CIGCGCLSL+SCPLRNP+D+AA+AGPGARLFDP+
Sbjct: 35 RGLIRSTRNASGHRRYARDTLRRVAVIKAAQRIGIPLDEIADALSTLPEGRTPTASDWRQLSDAWRAQLDERIDKLCKLRDQLDDCIGCGCLSLESCPLRNPSDVAAQAGPGARLFDPD 153
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A1H8UJJ9_9GAMM (Redox-sensitive transcriptional activator SoxR n=1 Tax=Aquisalimonas asiatica TaxID=406100 RepID=A0A1H8UJJ9_9GAMM) HSP 1 Score: 182 bits (461), Expect = 9.480e-57 Identity = 86/117 (73.50%), Postives = 101/117 (86.32%), Query Frame = 1
Query: 1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFD 351
+G+I S RN G RR+ R VLRRVA+IK AQR+GIPL EIAEAL+AL DG +P+A+DW++LSD WR NL++RIDKL KLRD+LDGCIGCGCLSL+SCPLRNP DIAAE GPGARLFD
Sbjct: 37 KGLISSWRNSGGQRRFPRSVLRRVAVIKAAQRIGIPLSEIAEALAALPDGRSPTAADWQRLSDRWRANLNERIDKLIKLRDDLDGCIGCGCLSLESCPLRNPGDIAAEGGPGARLFD 153
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: U2FTE4_9GAMM (Redox-sensitive transcriptional activator SoxR n=1 Tax=Salinisphaera shabanensis E1L3A TaxID=1033802 RepID=U2FTE4_9GAMM) HSP 1 Score: 173 bits (439), Expect = 2.560e-53 Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 1
Query: 1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDPN 357
+G+I SRRN RRY RDVLR V++IKVAQRVGIPL EI EAL+ L + PSA DWR+LSD W+ L +RID L KLRD+LDGCIGCGCLSL++CPLRNP DIAA+AGPGARLFDP+
Sbjct: 35 KGLISSRRNTGNQRRYTRDVLRVVSLIKVAQRVGIPLAEIGEALATLPERRAPSADDWRRLSDHWKNRLEERIDHLVKLRDQLDGCIGCGCLSLEACPLRNPDDIAAQAGPGARLFDPH 153
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A2E9AP16_9GAMM (Redox-sensitive transcriptional activator SoxR n=1 Tax=Salinisphaera sp. TaxID=1914330 RepID=A0A2E9AP16_9GAMM) HSP 1 Score: 173 bits (439), Expect = 2.560e-53 Identity = 81/117 (69.23%), Postives = 98/117 (83.76%), Query Frame = 1
Query: 1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFD 351
+G+I+SRRN RRY+RDVLR VA+IK AQRVGIPL +I +AL+ L DG PSA DWR+LSD W+ L +RI +L+KLRD+LDGCIGCGCLSL++CPLRNP DIAA+AGPGARLFD
Sbjct: 35 KGLIRSRRNAGNQRRYSRDVLRVVALIKAAQRVGIPLADIGQALATLPDGRAPSAEDWRRLSDGWKNQLEERIAQLTKLRDQLDGCIGCGCLSLQACPLRNPDDIAAQAGPGARLFD 151
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: W1N1X6_9GAMM (Redox-sensitive transcriptional activator SoxR n=2 Tax=Halomonas TaxID=2745 RepID=W1N1X6_9GAMM) HSP 1 Score: 169 bits (429), Expect = 6.390e-52 Identity = 79/118 (66.95%), Postives = 97/118 (82.20%), Query Frame = 1
Query: 1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDP 354
RG+I S RN RRY+RDVLRRVA+IK+AQR+GIPL EI +AL+ L + PSA +W Q+SD W+ +L++RIDKL+KLRD+LDGCIGCGCLSL SCPLRNP DIA+E GPG R+FDP
Sbjct: 35 RGLIHSWRNAGNQRRYSRDVLRRVAVIKIAQRLGIPLAEIHDALAVLPEKRAPSAGEWHQISDRWKDDLNERIDKLTKLRDQLDGCIGCGCLSLSSCPLRNPDDIASEDGPGPRMFDP 152
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A7V7KTY4_9PSED (Redox-sensitive transcriptional activator SoxR n=1 Tax=Pseudomonas laoshanensis TaxID=2268758 RepID=A0A7V7KTY4_9PSED) HSP 1 Score: 166 bits (420), Expect = 1.450e-50 Identity = 80/117 (68.38%), Postives = 95/117 (81.20%), Query Frame = 1
Query: 1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFD 351
+G+IKS RN G R Y RD LRRVAIIK AQR+GIPL +IA+ALSAL D TP+A+DWR+LS W+ L++RI++L KLRD LDGCIGCGCLS+ +CPLRNP D AA AGPGARLFD
Sbjct: 35 KGLIKSMRNAGGQRLYRRDELRRVAIIKAAQRLGIPLTDIAQALSALPDNRTPTAADWRKLSSRWQQQLNERIEQLLKLRDALDGCIGCGCLSMTACPLRNPGDEAATAGPGARLFD 151
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: S2L682_HALAF (Redox-sensitive transcriptional activator SoxR n=2 Tax=Halomonas TaxID=2745 RepID=S2L682_HALAF) HSP 1 Score: 162 bits (410), Expect = 4.970e-49 Identity = 78/118 (66.10%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDP 354
+G+IKSRRN RRY RDVLRRVAIIKVAQR GIPL I EAL L DG TP++ DWR LS W+ L DRI++L+KLR++L GCIGCGCLSL CPLRNP D +E GPG RL DP
Sbjct: 35 KGLIKSRRNAGNQRRYTRDVLRRVAIIKVAQRTGIPLASIREALHTLPDGRTPNSEDWRHLSAQWKAELDDRIERLTKLRNQLSGCIGCGCLSLDDCPLRNPWDELSEEGPGPRLLDP 152
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: UPI00193BC90B (Redox-sensitive transcriptional activator SoxR n=2 Tax=Archangium violaceum TaxID=83451 RepID=UPI00193BC90B) HSP 1 Score: 162 bits (409), Expect = 7.500e-49 Identity = 78/118 (66.10%), Postives = 91/118 (77.12%), Query Frame = 1
Query: 4 GMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDPN 357
G+I RN HRRYARDVLRRVAIIKVAQR GIPL I EALS+L DG TP+A DW +LS +WR L RI +L++LRD+LDGCIGCGCLSL +CPLRNP D ++ GPG RL DP+
Sbjct: 36 GLISGWRNSGNHRRYARDVLRRVAIIKVAQRAGIPLATIREALSSLPDGRTPTAEDWARLSASWRAELDGRIQRLTRLRDQLDGCIGCGCLSLNACPLRNPWDELSDEGPGPRLLDPD 153
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Match: A0A7W5J7U1_9GAMM (Redox-sensitive transcriptional activator SoxR n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A7W5J7U1_9GAMM) HSP 1 Score: 161 bits (407), Expect = 1.710e-48 Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1
Query: 1 RGMIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTPSASDWRQLSDAWRTNLSDRIDKLSKLRDELDGCIGCGCLSLKSCPLRNPADIAAEAGPGARLFDP 354
+G+I S RN RRY R+VLRRVAIIKVAQR GIPL EI EALS+L +G TP+A+DWR+LS W+ +L DRI++L++LRD +D CIGCGCLSLK CPLRNP D A+ GPG RL DP
Sbjct: 42 KGLIHSWRNAGNQRRYPREVLRRVAIIKVAQRTGIPLAEIREALSSLPEGRTPTAADWRKLSARWQADLDDRIERLTRLRDHMDSCIGCGCLSLKVCPLRNPLDELADEGPGPRLLDP 159 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig15434.3152.1 >prot_E-siliculosus-1a_F_contig15434.3152.1 ID=prot_E-siliculosus-1a_F_contig15434.3152.1|Name=mRNA_E-siliculosus-1a_F_contig15434.3152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp MIKSRRNVSGHRRYARDVLRRVAIIKVAQRVGIPLEEIAEALSALHDGGTback to top mRNA from alignment at E-siliculosus-1a_F_contig15434:608..967- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig15434.3152.1 ID=mRNA_E-siliculosus-1a_F_contig15434.3152.1|Name=mRNA_E-siliculosus-1a_F_contig15434.3152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15434:608..967- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15434:608..967- >mRNA_E-siliculosus-1a_F_contig15434.3152.1 ID=mRNA_E-siliculosus-1a_F_contig15434.3152.1|Name=mRNA_E-siliculosus-1a_F_contig15434.3152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15434:608..967- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |