mRNA_E-siliculosus-1a_F_contig15434.3151.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15434.3151.1
Unique NamemRNA_E-siliculosus-1a_F_contig15434.3151.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: A0A1U9R9J6_9GAMM (Glutathione S-transferase n=1 Tax=Halomonas sp. 'Soap Lake #7' TaxID=1962264 RepID=A0A1U9R9J6_9GAMM)

HSP 1 Score: 278 bits (711), Expect = 1.620e-93
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1
Query:    1 ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAADQARNA 429
            ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRK+LENFLASRLLHMEQVLAKREWLAGGFS+ADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAADQ RNA
Sbjct:   75 ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKNLENFLASRLLHMEQVLAKREWLAGGFSVADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAADQTRNA 217          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: UPI001CBC4124 (glutathione S-transferase family protein n=1 Tax=Alcanivorax limicola TaxID=2874102 RepID=UPI001CBC4124)

HSP 1 Score: 220 bits (561), Expect = 9.550e-71
Identity = 110/137 (80.29%), Postives = 121/137 (88.32%), Query Frame = 1
Query:    4 LLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAAD 414
            LLYLAE+S  LMP+D +GR + IEWLFA LNSVEMATVPWSLFMFS DTQ TPGRK+L+ FLASRL HMEQVLA REWLA  FS+ADIVMSD LRLVDRFNGLE+H ASR+YIARATARPAF+KAH DQ+AFYAAAD
Sbjct:   76 LLYLAEQSGVLMPQDAMGRYKVIEWLFAGLNSVEMATVPWSLFMFSDDTQKTPGRKTLDAFLASRLHHMEQVLAGREWLADAFSVADIVMSDALRLVDRFNGLEQHAASRDYIARATARPAFLKAHADQMAFYAAAD 212          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: UPI000F88328E (glutathione S-transferase family protein n=1 Tax=Aliidiomarina sedimenti TaxID=1933879 RepID=UPI000F88328E)

HSP 1 Score: 216 bits (550), Expect = 5.110e-69
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 1
Query:    1 ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAADQARN 426
            ILLYLAERS ALMP + +GRN+ IEWLFA LNSVEMATVPWS FMFS D + TPGRK L+NFL SRL HMEQ LA+REWLA  FS+ADIVM D LRLVDRFNGLE+H+ASR YIARATARPAF KAH DQLAFYAAAD   N
Sbjct:   75 ILLYLAERSTALMPHEPLGRNKVIEWLFAGLNSVEMATVPWSFFMFSDDHEATPGRKILDNFLQSRLHHMEQELAEREWLADDFSVADIVMVDALRLVDRFNGLEQHSASRAYIARATARPAFAKAHADQLAFYAAADSKLN 216          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: W1NC59_9GAMM (Glutathione S-transferase n=1 Tax=Halomonas huangheensis TaxID=1178482 RepID=W1NC59_9GAMM)

HSP 1 Score: 210 bits (534), Expect = 1.180e-66
Identity = 100/138 (72.46%), Postives = 123/138 (89.13%), Query Frame = 1
Query:    1 ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAAD 414
            ILL+L ERS+ LMP D  GR ETIEWLFAALNSVEMA++PW+L++F+GD++DTPGR+ L+ FLASRL H+E +LAKREWLAG FSIADI+M+DILRLVDRF+GL++H ASR YIARATARP+F+KAH DQ+A +AAAD
Sbjct:   75 ILLHLGERSDVLMPSDPRGRRETIEWLFAALNSVEMASLPWALYLFTGDSEDTPGRRLLDRFLASRLEHLEPILAKREWLAGSFSIADILMADILRLVDRFDGLKDHPASRAYIARATARPSFVKAHADQMAHFAAAD 212          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: A0A1P8R447_9GAMM (Glutathione S-transferase n=3 Tax=Halomonas TaxID=2745 RepID=A0A1P8R447_9GAMM)

HSP 1 Score: 203 bits (516), Expect = 6.390e-64
Identity = 102/138 (73.91%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAAD 414
            ILLYL ERSE LMP D   R E IEWLFAALNSVEMA++PWSLF F+GDT  TPG+++L+NFLASRL H+E VLAKREWLAG FSIADI M+D+LRLVDRF+GL +    R YI+RATARPAF+KAH DQLAFYAAAD
Sbjct:   75 ILLYLGERSEVLMPVDPHRRLEVIEWLFAALNSVEMASLPWSLFHFAGDTHVTPGKQTLDNFLASRLQHLESVLAKREWLAGTFSIADIAMADVLRLVDRFDGLAQSPTCRAYISRATARPAFVKAHADQLAFYAAAD 212          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: A0A432WM89_9GAMM (Uncharacterized protein n=2 Tax=Aliidiomarina soli TaxID=1928574 RepID=A0A432WM89_9GAMM)

HSP 1 Score: 201 bits (510), Expect = 8.580e-64
Identity = 100/126 (79.37%), Postives = 109/126 (86.51%), Query Frame = 1
Query:   37 MPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAAD 414
            MPR+ +GRN+ IEWLFA LNSVEMATVPWS FMFS D + TPGRK L+NFL SRL HME+ LAKREWLA  FS+ADIVM D LRLVDRFNGLE+H+ASREYIARATARPAF KAH DQLAFYAAAD
Sbjct:    1 MPREPLGRNKVIEWLFAGLNSVEMATVPWSFFMFSDDHEATPGRKILDNFLQSRLHHMEKELAKREWLADDFSVADIVMVDALRLVDRFNGLEQHSASREYIARATARPAFTKAHADQLAFYAAAD 126          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: A0A545T0C3_9GAMM (Glutathione S-transferase family protein n=1 Tax=Exilibacterium tricleocarpae TaxID=2591008 RepID=A0A545T0C3_9GAMM)

HSP 1 Score: 202 bits (514), Expect = 1.290e-63
Identity = 97/138 (70.29%), Postives = 117/138 (84.78%), Query Frame = 1
Query:    1 ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAAD 414
            ILLYL ER +AL+P D  GRNE I+WLFAALNSVEMA++PWS+FMFSGDT++TPGRK L+ FL +RL HMEQVLA REWLAG FSIADI+M+D+LRLV+RF+GL E+   REY+ARAT RP F+KAH D +A +AAAD
Sbjct:   75 ILLYLGERGDALLPSDPRGRNEVIKWLFAALNSVEMASLPWSIFMFSGDTENTPGRKGLDAFLKARLQHMEQVLAGREWLAGSFSIADILMADVLRLVNRFDGLAEYQNCREYVARATTRPTFVKAHADHMAHFAAAD 212          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: UPI0018DB9328 (glutathione S-transferase family protein n=2 Tax=Halomonas TaxID=2745 RepID=UPI0018DB9328)

HSP 1 Score: 202 bits (513), Expect = 1.820e-63
Identity = 98/138 (71.01%), Postives = 117/138 (84.78%), Query Frame = 1
Query:    1 ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAAD 414
            ILL+L ERS+ALMP D   R E IEWLFAALNSVEMA++PWSL+ F+GDT+DTPGR+ LE FLA+RL H+E VL  REWLAGGFSIADI M+D+LRL+DRF+GL +  A R+Y+ARATARPAF+KAH DQLA +AAAD
Sbjct:   75 ILLHLGERSDALMPADPRRRGEVIEWLFAALNSVEMASLPWSLYRFTGDTEDTPGRQVLERFLAARLQHLESVLGGREWLAGGFSIADIAMADVLRLIDRFDGLVDSPACRDYVARATARPAFVKAHADQLAHFAAAD 212          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: UPI00047C3CD7 (glutathione S-transferase family protein n=1 Tax=Alcanivorax sp. 43B_GOM-46m TaxID=1380387 RepID=UPI00047C3CD7)

HSP 1 Score: 201 bits (510), Expect = 5.050e-63
Identity = 98/135 (72.59%), Postives = 115/135 (85.19%), Query Frame = 1
Query:    1 ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYA 405
            ILLYL ERSEALMP D   R+E I+WLFAALNSVEMA++PW LF FSGD + TPGR+ L++FLASRL HME VLA REWLAG FSIADI+M+D+LRLVDRF+GL EH A R+Y+ARATARPAF+KAH DQ+A +A
Sbjct:   75 ILLYLGERSEALMPADPRARSEVIQWLFAALNSVEMASLPWFLFQFSGDKEQTPGRQYLDDFLASRLRHMEAVLAGREWLAGRFSIADILMADVLRLVDRFDGLTEHPACRDYVARATARPAFVKAHADQMAHFA 209          
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Match: UPI001867DF3E (glutathione S-transferase family protein n=1 Tax=Microbulbifer taiwanensis TaxID=986746 RepID=UPI001867DF3E)

HSP 1 Score: 199 bits (507), Expect = 1.490e-62
Identity = 96/138 (69.57%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDTQDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDRFNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAAD 414
            ILL+L +RSEAL+P D   R+E IEWLFAALNSVEMA++PWS+F+FSGDT+ TPGRKSL+NFL SRL H+E VLA+REWLAG FS+ADI+M+D+LRLV+RF+GL    A R+YIARATARP+F+KA+ DQ+A +AAAD
Sbjct:   75 ILLHLGQRSEALIPTDPRSRSEVIEWLFAALNSVEMASLPWSIFIFSGDTEATPGRKSLDNFLESRLQHLESVLAEREWLAGAFSVADILMADVLRLVERFDGLAGQPACRDYIARATARPSFVKAYADQMAHFAAAD 212          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15434.3151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U9R9J6_9GAMM1.620e-9397.90Glutathione S-transferase n=1 Tax=Halomonas sp. 'S... [more]
UPI001CBC41249.550e-7180.29glutathione S-transferase family protein n=1 Tax=A... [more]
UPI000F88328E5.110e-6977.46glutathione S-transferase family protein n=1 Tax=A... [more]
W1NC59_9GAMM1.180e-6672.46Glutathione S-transferase n=1 Tax=Halomonas huangh... [more]
A0A1P8R447_9GAMM6.390e-6473.91Glutathione S-transferase n=3 Tax=Halomonas TaxID=... [more]
A0A432WM89_9GAMM8.580e-6479.37Uncharacterized protein n=2 Tax=Aliidiomarina soli... [more]
A0A545T0C3_9GAMM1.290e-6370.29Glutathione S-transferase family protein n=1 Tax=E... [more]
UPI0018DB93281.820e-6371.01glutathione S-transferase family protein n=2 Tax=H... [more]
UPI00047C3CD75.050e-6372.59glutathione S-transferase family protein n=1 Tax=A... [more]
UPI001867DF3E1.490e-6269.57glutathione S-transferase family protein n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15434contigE-siliculosus-1a_F_contig15434:1..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size432
Model size432
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelGammaproteobacteria
COG Functional cat.O
EC2.5.1.18
EggNOG OGs1NE6Z@1224,1RRET@1236,COG0625@1,COG0625@2
EggNOG free text desc.Glutathione S-Transferase
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG koko:K00799
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
Seed eggNOG ortholog1178482.BJB45_17770
Seed ortholog evalue3.5e-52
Seed ortholog score211.1
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928052.587042-CDS-E-siliculosus-1a_F_contig15434:0..4321622928052.587042-CDS-E-siliculosus-1a_F_contig15434:0..432Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15434 1..432 +
1696318788.7338176-CDS-E-siliculosus-1a_F_contig15434:0..4321696318788.7338176-CDS-E-siliculosus-1a_F_contig15434:0..432Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15434 1..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15434.3151.1prot_E-siliculosus-1a_F_contig15434.3151.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15434 1..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15434.3151.1

>prot_E-siliculosus-1a_F_contig15434.3151.1 ID=prot_E-siliculosus-1a_F_contig15434.3151.1|Name=mRNA_E-siliculosus-1a_F_contig15434.3151.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=144bp
ILLYLAERSEALMPRDRVGRNETIEWLFAALNSVEMATVPWSLFMFSGDT
QDTPGRKSLENFLASRLLHMEQVLAKREWLAGGFSIADIVMSDILRLVDR
FNGLEEHTASREYIARATARPAFIKAHKDQLAFYAAADQARNA*
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mRNA from alignment at E-siliculosus-1a_F_contig15434:1..432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15434.3151.1 ID=mRNA_E-siliculosus-1a_F_contig15434.3151.1|Name=mRNA_E-siliculosus-1a_F_contig15434.3151.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15434:1..432+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATATTGCTATATCTAGCTGAGCGGAGTGAGGCTCTAATGCCTCGGGATCG AGTAGGCCGCAATGAGACGATCGAGTGGCTATTTGCTGCACTCAATTCAG TCGAAATGGCAACCGTGCCATGGTCGCTATTTATGTTTTCTGGAGACACT CAGGATACCCCTGGGCGCAAAAGCCTTGAGAATTTTCTGGCAAGTCGGCT TCTTCATATGGAGCAAGTGCTTGCTAAGCGGGAATGGCTAGCCGGAGGGT TTTCAATTGCCGACATTGTCATGTCTGATATATTGCGTCTAGTGGATAGA TTCAATGGTCTAGAAGAGCATACCGCTAGTCGTGAGTATATTGCTCGGGC TACCGCTCGCCCAGCATTCATAAAAGCCCATAAGGATCAGCTGGCCTTTT ACGCAGCAGCGGATCAGGCGCGTAATGCCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15434:1..432+

>mRNA_E-siliculosus-1a_F_contig15434.3151.1 ID=mRNA_E-siliculosus-1a_F_contig15434.3151.1|Name=mRNA_E-siliculosus-1a_F_contig15434.3151.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15434:1..432+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATATTGCTATATCTAGCTGAGCGGAGTGAGGCTCTAATGCCTCGGGATCG
AGTAGGCCGCAATGAGACGATCGAGTGGCTATTTGCTGCACTCAATTCAG
TCGAAATGGCAACCGTGCCATGGTCGCTATTTATGTTTTCTGGAGACACT
CAGGATACCCCTGGGCGCAAAAGCCTTGAGAATTTTCTGGCAAGTCGGCT
TCTTCATATGGAGCAAGTGCTTGCTAAGCGGGAATGGCTAGCCGGAGGGT
TTTCAATTGCCGACATTGTCATGTCTGATATATTGCGTCTAGTGGATAGA
TTCAATGGTCTAGAAGAGCATACCGCTAGTCGTGAGTATATTGCTCGGGC
TACCGCTCGCCCAGCATTCATAAAAGCCCATAAGGATCAGCTGGCCTTTT
ACGCAGCAGCGGATCAGGCGCGTAATGCCTAAATATTGCTATATCTAGCT
GAGCGGAGTGAGGCTCTAATGCCTCGGGATCGAGTAGGCCGCAATGAGAC
GATCGAGTGGCTATTTGCTGCACTCAATTCAGTCGAAATGGCAACCGTGC
CATGGTCGCTATTTATGTTTTCTGGAGACACTCAGGATACCCCTGGGCGC
AAAAGCCTTGAGAATTTTCTGGCAAGTCGGCTTCTTCATATGGAGCAAGT
GCTTGCTAAGCGGGAATGGCTAGCCGGAGGGTTTTCAATTGCCGACATTG
TCATGTCTGATATATTGCGTCTAGTGGATAGATTCAATGGTCTAGAAGAG
CATACCGCTAGTCGTGAGTATATTGCTCGGGCTACCGCTCGCCCAGCATT
CATAAAAGCCCATAAGGATCAGCTGGCCTTTTACGCAGCAGCGGATCAGG
CGCGTAATGCCTAA
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