mRNA_E-siliculosus-1a_F_contig1541.3138.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1541.3138.1
Unique NamemRNA_E-siliculosus-1a_F_contig1541.3138.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: D8LEI3_ECTSI (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI3_ECTSI)

HSP 1 Score: 464 bits (1195), Expect = 1.270e-164
Identity = 217/223 (97.31%), Postives = 218/223 (97.76%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSMNGSKPTTVIKDPMHLLERHSSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDFRCMNKRQGHP 669
            MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKF EGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSM+GSKPTTVIKDPMHLLERH SEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDFRCM   QGHP
Sbjct:   42 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKF-EGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSMDGSKPTTVIKDPMHLLERHGSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDFRCMKASQGHP 263
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: A0A6H5JAT4_9PHAE (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT4_9PHAE)

HSP 1 Score: 431 bits (1107), Expect = 4.080e-148
Identity = 211/251 (84.06%), Postives = 212/251 (84.46%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSMNGSKPTTVIKD--------------------------------------PMHLLERHSSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 639
            MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKF EGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSM+GSKPTTVIKD                                      PMHLLERHSSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF
Sbjct:  204 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKF-EGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSMDGSKPTTVIKDAHSANINCLAFNPFSEFLLATGSSDTTVALWDMRNMGKPMHLLERHSSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 453
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: A0A3L7I9Y9_CRIGR (RBBP4 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A3L7I9Y9_CRIGR)

HSP 1 Score: 249 bits (636), Expect = 3.470e-78
Identity = 125/228 (54.82%), Postives = 154/228 (67.54%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGA---GQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDT-SMNGSKP----------TTVIKDPMHL-LERHSSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 639
            MPQN  +IATK+PS+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WDI      G+ VDA   F  GHT+VV DV+WH  +  L GSV DD++L+ WDT S N SKP          T  + D  +L L+ HS E+   E+  VQW+  +ETIL S   DRR+ VW LS+IGEEQSPEDAEDGPPELLFIHGGHT+++ DF
Sbjct:  133 MPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFT-GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAETVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF 359
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: A0A556U5T8_BAGYA (Histone-binding protein RBBP7 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556U5T8_BAGYA)

HSP 1 Score: 234 bits (597), Expect = 6.360e-73
Identity = 118/220 (53.64%), Postives = 150/220 (68.18%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGA---GQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLF--WDTSMNGSKPTTV-IKDPMHL-LERHSSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 639
            MPQN  +IATK+P++DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WDI G+   G+ +DA   F  GHT+VV DV+WH  +  L GSV DD++L+   W        P TV + D  +L L+ HS E+   E+  VQW+  +ETIL S   DRR+ VW LS+IGEEQS EDAEDGPPELLFIHGGHT+++ DF
Sbjct:   95 MPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISGSPKEGKIIDAKTIFT-GHTAVVEDVSWHLLHESLFGSVADDQKLMIELWTIDF----PLTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDF 309
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: S9XGN8_CAMFR (Histone-binding protein RBBP4 n=1 Tax=Camelus ferus TaxID=419612 RepID=S9XGN8_CAMFR)

HSP 1 Score: 241 bits (614), Expect = 2.020e-72
Identity = 120/218 (55.05%), Postives = 149/218 (68.35%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGA---GQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSMNGSKPTTV-IKDPMHL-LERHSSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 639
            MPQN  +IATK+PS+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WDI      G+ VDA   F  GHT+VV DV+WH  +  L GSV DD++L+       GS   TV + D  +L L+ HS E+   E+  VQW+  +ETIL S   DRR+ VW LS+IGEEQSPEDAEDGPPELLFIHGGHT+++ DF
Sbjct:  378 MPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFT-GHTAVVEDVSWHLLHESLFGSVADDQKLMIEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF 594
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: G5B5J6_HETGA (Histone-binding protein RBBP4 n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5B5J6_HETGA)

HSP 1 Score: 232 bits (591), Expect = 2.390e-71
Identity = 120/241 (49.79%), Postives = 150/241 (62.24%), Query Frame = 1 
Query:    1 MPQNEFVIATKSP-----------SADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGA---GQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDT-SMNGSKPTTVIKDPMHLLERHSSEA-------------GDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 639
            MPQN  +IATK+P           S+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WDI      G+ VDA   F  GHT+VV DV+WH  +  L GSV DD++L+ WDT S N SKP+       H ++ H+++                G    VQW+  +ETIL S   DRR+ VW LS+IGEEQSPEDAEDGPPELLFIHGGHT+++ DF
Sbjct:  133 MPQNPCIIATKTPPQNRXXXXXXXSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFT-GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPS-------HSVDAHTADVTCLSFNPYSEFILATGSADKVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF 365
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: UPI000F0A2907 (histone-binding protein RBBP7 isoform X1 n=2 Tax=Characiphysae TaxID=186628 RepID=UPI000F0A2907)

HSP 1 Score: 232 bits (591), Expect = 4.440e-71
Identity = 124/256 (48.44%), Postives = 155/256 (60.55%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGA---GQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDT-SMNGSKP-------------------------------TTVIKDPMHL-LERHSSEAGDGEVLG-------VQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 639
            MPQN  +IATK+P++DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WDI G+   G+ VDA   F  GHT+VV DV+WH  +  L GSV DD++L+ WDT S N SKP                               T  + D  +L L+ HS E+   E+         VQW+  +ETIL S   DRR+ VW LS+IGEEQS EDAEDGPPELLFIHGGHT+++ DF
Sbjct:  133 MPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISGSPKEGKIVDAKTIFT-GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQFLHITRQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDF 387
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: A0A1I8F5C9_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8F5C9_9PLAT)

HSP 1 Score: 238 bits (606), Expect = 5.850e-71
Identity = 118/243 (48.56%), Postives = 152/243 (62.55%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDT-SMNGSKPTTVIK-----------DPMHL------------------LERHSSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 639
            MPQN  +IATK+PS+DV +FD +KHPS P  +  CRPE R KGH KEGYGLSWNP++E  LLS SDD  +C WD              + GH+SVV DV+WH  + ++ GSVGDD++L+ WDT + + SKPT  ++           +P  L                  L+ HS E+   E+  VQW+  +ETIL S   DRR+ VW LS+IGEEQ+PEDAEDGPPELLFIHGGHT+++ DF
Sbjct:   83 MPQNPTIIATKTPSSDVLIFDYTKHPSKPDPSGECRPEIRLKGHQKEGYGLSWNPNIEAHLLSASDDHTICLWDC-------------SRGHSSVVEDVSWHLLHDRIFGSVGDDQKLMIWDTRAKSSSKPTHSVEAHTAEVNCLSFNPFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQAPEDAEDGPPELLFIHGGHTAKISDF 312
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: A0A5N5TJX5_9CRUS (Putative histone-binding protein Caf1 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A5N5TJX5_9CRUS)

HSP 1 Score: 230 bits (586), Expect = 6.780e-71
Identity = 114/229 (49.78%), Postives = 142/229 (62.01%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGA---GQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSMNGSKPTTVIKDPMHLLERHSSEAG-------------DGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 639
            MPQN  VIATK+PS+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WDI       + +DA   F  GHT+VV DVAWH  +  L GSV DD++L+ WDT  N +        P H ++ H++E                G    VQW+  +   L S   DRR+ VW LS+IGEEQS EDAEDGPPELLFIHGGHT+++ DF
Sbjct:  136 MPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNNTNK------PSHTVDAHTAEVNCLSFNPYSEFILATGSADKVQWSPHNXXXLASSGTDRRLHVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDF 357
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Match: A0A5F4VRT4_CALJA (RB binding protein 4, chromatin remodeling factor n=5 Tax=Gnathostomata TaxID=7776 RepID=A0A5F4VRT4_CALJA)

HSP 1 Score: 229 bits (583), Expect = 2.330e-70
Identity = 119/228 (52.19%), Postives = 147/228 (64.47%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGA---GQTVDATQKFAEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDT-SMNGSKPTTVIKDPMHLLERHSSEAGDGEVLGVQWASFDETILGSCSAD-----------RRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 639
            MPQN  +IATK+PS+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WDI      G+ VDA   F  GHT+VV DV+WH  +  L GSV DD++L+ WDT S N SKP+            HS +A   EV  + +  + E IL + SAD           RR+ VW LS+IGEEQSPEDAEDGPPELLFIHGGHT+++ DF
Sbjct:  133 MPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFT-GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPS------------HSVDAHTAEVNCLSFNPYSEFILATGSADKVKIFYLNGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF 347
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1541.3138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEI3_ECTSI1.270e-16497.31CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JAT4_9PHAE4.080e-14884.06CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]
A0A3L7I9Y9_CRIGR3.470e-7854.82RBBP4 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0... [more]
A0A556U5T8_BAGYA6.360e-7353.64Histone-binding protein RBBP7 n=1 Tax=Bagarius yar... [more]
S9XGN8_CAMFR2.020e-7255.05Histone-binding protein RBBP4 n=1 Tax=Camelus feru... [more]
G5B5J6_HETGA2.390e-7149.79Histone-binding protein RBBP4 n=1 Tax=Heterocephal... [more]
UPI000F0A29074.440e-7148.44histone-binding protein RBBP7 isoform X1 n=2 Tax=C... [more]
A0A1I8F5C9_9PLAT5.850e-7148.56Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A5N5TJX5_9CRUS6.780e-7149.78Putative histone-binding protein Caf1 n=2 Tax=Arma... [more]
A0A5F4VRT4_CALJA2.330e-7052.19RB binding protein 4, chromatin remodeling factor ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1541contigE-siliculosus-1a_F_contig1541:82..3883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size678
Model size678
Exons6
Ec32 orthologEc-21_004560.1
Ec32 ortholog descriptionNurf-55
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EggNOG OGsKOG0264@1,KOG0264@2759
EggNOG free text desc.chromatin organization
GOsGO:0000003,GO:0000070,GO:0000118,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001558,GO:0001708,GO:0002064,GO:0002065,GO:0002066,GO:0002244,GO:0002376,GO:0002520,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006338,GO:0006342,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006476,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007379,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008213,GO:0008283,GO:0008284,GO:0008285,GO:0008406,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010286,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010927,GO:0010948,GO:0014070,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016575,GO:0016580,GO:0016581,GO:0016584,GO:0016589,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019213,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030261,GO:0030308,GO:0030703,GO:0030707,GO:0030855,GO:0031010,GO:0031055,GO:0031099,GO:0031101,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031519,GO:0031523,GO:0031974,GO:0031981,GO:0032221,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032989,GO:0032991,GO:0033186,GO:0033554,GO:0033558,GO:0033698,GO:0033993,GO:0034080,GO:0034508,GO:0034605,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034723,GO:0034724,GO:0034728,GO:0035035,GO:0035097,GO:0035098,GO:0035239,GO:0035282,GO:0035295,GO:0035601,GO:0036211,GO:0040007,GO:0040008,GO:0040029,GO:0040035,GO:0042060,GO:0042127,GO:0042221,GO:0042246,GO:0042393,GO:0042766,GO:0042802,GO:0042803,GO:0042826,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043565,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0045137,GO:0045138,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0046661,GO:0046689,GO:0046983,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048806,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051704,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0060429,GO:0061458,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070176,GO:0070210,GO:0070316,GO:0070317,GO:0070370,GO:0070603,GO:0070822,GO:0070925,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090545,GO:0090568,GO:0090571,GO:0090598,GO:0097159,GO:0097659,GO:0098654,GO:0098687,GO:0098732,GO:0098813,GO:0140014,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:1990483,GO:1990837,GO:2000112,GO:2000113,GO:2001141
KEGG Pathwayko04218,map04218
KEGG koko:K10752,ko:K11659
Preferred nameRBBP4
Seed eggNOG ortholog2880.D8LEI3
Seed ortholog evalue4e-127
Seed ortholog score460.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1541.3138.1prot_E-siliculosus-1a_F_contig1541.3138.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1541 82..3883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.222614-CDS-E-siliculosus-1a_F_contig1541:81..1181622928051.222614-CDS-E-siliculosus-1a_F_contig1541:81..118Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 82..118 -
1696318788.0641222-CDS-E-siliculosus-1a_F_contig1541:81..1181696318788.0641222-CDS-E-siliculosus-1a_F_contig1541:81..118Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 82..118 -
1622928051.2384007-CDS-E-siliculosus-1a_F_contig1541:920..11051622928051.2384007-CDS-E-siliculosus-1a_F_contig1541:920..1105Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 921..1105 -
1696318788.0746703-CDS-E-siliculosus-1a_F_contig1541:920..11051696318788.0746703-CDS-E-siliculosus-1a_F_contig1541:920..1105Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 921..1105 -
1622928051.249419-CDS-E-siliculosus-1a_F_contig1541:1534..15821622928051.249419-CDS-E-siliculosus-1a_F_contig1541:1534..1582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 1535..1582 -
1696318788.0833046-CDS-E-siliculosus-1a_F_contig1541:1534..15821696318788.0833046-CDS-E-siliculosus-1a_F_contig1541:1534..1582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 1535..1582 -
1622928051.2623384-CDS-E-siliculosus-1a_F_contig1541:2015..21581622928051.2623384-CDS-E-siliculosus-1a_F_contig1541:2015..2158Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 2016..2158 -
1696318788.0917988-CDS-E-siliculosus-1a_F_contig1541:2015..21581696318788.0917988-CDS-E-siliculosus-1a_F_contig1541:2015..2158Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 2016..2158 -
1622928051.2727578-CDS-E-siliculosus-1a_F_contig1541:3159..33231622928051.2727578-CDS-E-siliculosus-1a_F_contig1541:3159..3323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 3160..3323 -
1696318788.100678-CDS-E-siliculosus-1a_F_contig1541:3159..33231696318788.100678-CDS-E-siliculosus-1a_F_contig1541:3159..3323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 3160..3323 -
1622928051.2857149-CDS-E-siliculosus-1a_F_contig1541:3782..38831622928051.2857149-CDS-E-siliculosus-1a_F_contig1541:3782..3883Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 3783..3883 -
1696318788.1095881-CDS-E-siliculosus-1a_F_contig1541:3782..38831696318788.1095881-CDS-E-siliculosus-1a_F_contig1541:3782..3883Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 3783..3883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1541.3138.1

>prot_E-siliculosus-1a_F_contig1541.3138.1 ID=prot_E-siliculosus-1a_F_contig1541.3138.1|Name=mRNA_E-siliculosus-1a_F_contig1541.3138.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=226bp
MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYG
LSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKFAEGHTSVVGDVA
WHQQNPKLLGSVGDDRQLLFWDTSMNGSKPTTVIKDPMHLLERHSSEAGD
GEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELL
FIHGGHTSRVGDFRCMNKRQGHPPPP
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mRNA from alignment at E-siliculosus-1a_F_contig1541:82..3883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1541.3138.1 ID=mRNA_E-siliculosus-1a_F_contig1541.3138.1|Name=mRNA_E-siliculosus-1a_F_contig1541.3138.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3802bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1541:82..3883- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGCAGAACGAGTTCGTGATCGCCACCAAGTCCCCCTCGGCGGACGT
GTGCGTGTTCGACATCTCCAAGCACCCCAGCGTGCCCCCGTCCAACAGCG
GGTGAGAGAGAACGAAACAACAGAACCACACTGGTGCATGTAGATTGCTC
CATGAAATTCAGATTCCTACACTTGCAATGAACTGAAGTCCTACGTTATC
CCATCAGTTGGGGTTCTCATCCAAGAAGGAAATGGGATTCCAACCAACAC
ACAAGTAAAGATCATGAGATTCCGACCATCAGTGAACTACGTCGTTGCTC
CCGTGAAACCATCAAAGGCGCGCTTTGACCGACCGCACAGAGTAGGAATG
TGCACAAATAGCTCGGACGCACAGGTGTATACCTCCTCGTTCAAGCTTCA
CCACGCGTTTCACACATGGCGAGGACTGCCGCTGCTGTGCTACAGGATGT
GAAAAATACCAACCTCTTTCGTGTCGACATAATTTATCAACACTGCTGTA
ACTCATCTGTCGTGTTTTGTGTTTCGTTTGTTTTCGTGTCAACGTTAACG
TTGTGAAAAGGTGCCGGCCGGAGCACCGATGCAAGGGCCACACCAAGGAG
GGCTACGGCCTCAGCTGGAACCCGCACGTGGAGGGCCGCCTGCTGTCCGG
GAGCGACGACGGGCTGGTGTGCTACTGGGACATCAAGGGGGCGGGACAGA
CCGTGGACGCGACTCAAAAATTCGGTGAGGATTAAGGGCGTTGAGAGATA
TCGTAGGGTGGTTTATAAAGGGTCATTGTGTAGCAAGGGTTGCGAGTTGT
GGGTAGTAAATGTTTGGTTGGTTCGGAGGGGAGGGGTGGGTTTGGTTGAT
ACTGCTGTGACAGGAAAGAGGGGGGAGGAAGGATGGCGCAGGAGCTTACG
GGGGGGGGGGGGGGGCGCGGGGTGTGGTCGCTTTTGCCTTGTTTTTGTGG
GGGCGGCGGTCATGGGGAAAGTTTCAGGGGGGNGAAGGTGAAGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGG
GGGGGGGGGGGCTCGTGATGTGGTCGCTTTTGCCTTGATTTTGTGGGGGC
TGCTGTCATGGGGAAAGTTTCAGGGACGACGACTTGATGTTGTGGTAGTT
TTTGAATTTGGGACTCGGTAGGGGGGTTGGGGGGGGAGCAGATATCCCTT
TCCTTGGATGATGATGGACGCAACAGCAGCCACAACGAAGTCATCGAGAG
GATGGGCCAAGGCGGCTTCCCGGGCACAACATTCATGGTTGGGTCGATCG
GGAATAATTGGCGACGAGGGCCGTGGAGGGCGAGCGGGAGGGAATGGGGG
TGATGCTTGGGATGGCAGCGCGTCGTAGGGCTACGCTACCTGGTGTACCT
ATTAGTGCTCACCATCTACCCTGGGGTAGTGCTTACTTTGTGTCCAAAGA
GCTCCCTGTGTCTGACCATGCATTCGGGGATTATTGCACTACTAGGAACA
AGAATGCAGACGACGGAAACAACGCCAACGATACTAGAGAACCGCCACCT
GCCATGACCGGGCGACGTGCCGTACTGCTGTACCTCCTTCCCTCACTCCC
ACCGGTTCTTTTTTGTCGTTTCGCTTTCCACTTTTTTTTGTTCCGAAACA
CCATACAACGACGATAACGACGGAGCAGAGGGGCATACTTCGGTGGTGGG
AGACGTGGCATGGCACCAGCAGAATCCGAAGCTGCTAGGCTCGGTTGGCG
ACGATAGACAACTCCTCTTCTGGGACACGTCCATGAACGGGTCCAAGCCG
ACTACGGTTATCAAGGATGTGAGCAGAAGAAAAACAAAAATGTGTTGGAA
AAAAACACACAACAACTGGGGTGTGTGAAGGGGGCGGGGTTTATGCATGC
ATGGCATGTAGACGGTACGAAACCCCAGTTCCTCAAATTTGACAGTTTTA
TTCTCCTCTTGCCCCCCCCTGTCCTCCTCCAGTTGGGTGTCCGACTATCA
ACACACTCAACTCTCTCTCTCGTTGTTTCCTTCCACCCCTCCCCGGTGCG
TATAATTCTTCTTGCTTCGTGGCGGTTGTCGGCCTACATCATCACGGACG
GGTTGGACTTCCCCCCCCCCCGCCCCCCGCCCCAAAGGCACACTCGGCGA
ATATCAACTGCTTGGCGTTCAACCCGTTCAGCGAGTTCTTGCTCGCGACG
GGCTCTTCCGATACCACCGTGGCGCTGTGGGACATGCGGAACATGGGCAA
GCCGATGCACCTGCTGGAGAGACACAGCAGCGAGGCCGGAGACGGAGAGG
TAGGGAGGAGGCGTTGTGGTTTAAACACGCACTACATGCTGCTACGATAG
AGCAGGCTGTTGGGGGCGAAGAAGACACTTTATTCTTGTGGCTGGTTTGC
CAGAAGACCGTGCTGACTGTTGGGCGAAGACTGTTTTTGTGGCTGATTTT
GCCAGCAGAAAGCGGAATAGTAGCGGGTGTTAATAGGTTGGATGGTACGT
ACAGTAGCCTAGCGCCTCTGCTTTTCGCTCAGGGATTAATGCGACATGAG
AGTCAGCGTTGTGTGGGCGAACGAATCACGCCACCCCTCCTTGGCCTGGG
CCGGCGAAAGCCCGGCATCTCGCTCCGGCCCGGGCGTGTAGGGGGGCGGG
GGCAAGGGGCCCCCACCACCCCGGCGTGCGTTTACCTTCCCCCCCCCCCC
CCCCCCCCCGCCCCTGCTTGCCAAACAGGTGCTGGGGGTGCAATGGGCGT
CGTTCGACGAGACCATCCTGGGGTCGTGCAGCGCGGACAGACGAGTCAAG
GTGTGGAGCCTGAGCCGCATCGGGGAGGAGCAGAGCCCGGAGGACGCGGA
GGACGGCCCGCCGGAGTTGCTCTTCATTCACGGGGGTCACACCAGCCGAG
TCGGAGACTTCAGGTATACATTTTGTGCATATAGTGAACCCTCCTACTCC
TTTCTTTGTGTGACTAACGACCACGGATTGAAGGTATTGAATAGCTTCTG
CTACCCGGCAGAAATGCTACGACCTGTGAGTGCTGATTTTAAAGTGAAGA
ACGATTTTTACTTTATGATGAACCATTTTTACTTTAATTTAACACGCAAG
TTTAACACCCAATTGGAGGGACGGGTAGACGTCCTCAGGGGCAGGAACCC
TTCTGTGTGACTGACGACCACGGATTGGAGCTAGCTCCTTCTACCCGAAA
GAAATGCTGTGAGCTGTGAGTGCTAGTTTAAAGCGATGAAAGAAAAAGTC
TTCCCCCTCCGCCCGCCGCCCTGGCCCGGGCTGGGCTGCGGTTGGTTGGT
TGCCTTGATGTATTATTTTTGTCTTTGGGGAACAGCGGCAGCAGTTGGTA
CTTGGTCGTGTGGAGGGTTGTTGGTTTCTGGTCATGCCATACCCTCTGCA
GACACAGCGGTTGTACACTACCTTAGATGTTGTTGGCCTGGAGACGAGGT
AGGACTGTTGGTGCGTCTTGCCCCCACTACCTCACACCTGTTATATGGCG
GTCATCGGCGGTACACGGGTGAACAGGTAGTGCAGACTCCCGGGGTGCTA
CAGCGAACCTCACCGCGTGACTGTTGGGGGCGCTCCTTTCCGTCCGTGCG
ACTGACTCGCGGAGCCCCCTCTCGGCGCTGCTAGGTTGGCCATGAACAAT
CTTGGCCTGCCACGCGAACAAATGCCACGCACCCCCCGCTCCGTACTTGT
GCAAATTTAACACAGATGCATGAACAAAAGGCAAGGTCACCCCCCGCCCC
CG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1541:82..3883-

>mRNA_E-siliculosus-1a_F_contig1541.3138.1 ID=mRNA_E-siliculosus-1a_F_contig1541.3138.1|Name=mRNA_E-siliculosus-1a_F_contig1541.3138.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1541:82..3883- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGCAGAACGAGTTCGTGATCGCCACCAAGTCCCCCTCGGCGGACGT
GTGCGTGTTCGACATCTCCAAGCACCCCAGCGTGCCCCCGTCCAACAGCG
GATGCCGCAGAACGAGTTCGTGATCGCCACCAAGTCCCCCTCGGCGGACG
TGTGCGTGTTCGACATCTCCAAGCACCCCAGCGTGCCCCCGTCCAACAGC
GGGTGCCGGCCGGAGCACCGATGCAAGGGCCACACCAAGGAGGGCTACGG
CCTCAGCTGGAACCCGCACGTGGAGGGCCGCCTGCTGTCCGGGAGCGACG
ACGGGCTGGTGTGCTACTGGGACATCAAGGGGGCGGGACAGACCGTGGAC
GCGACTCAAAAATTCGGTGCCGGCCGGAGCACCGATGCAAGGGCCACACC
AAGGAGGGCTACGGCCTCAGCTGGAACCCGCACGTGGAGGGCCGCCTGCT
GTCCGGGAGCGACGACGGGCTGGTGTGCTACTGGGACATCAAGGGGGCGG
GACAGACCGTGGACGCGACTCAAAAATTCGCAGAGGGGCATACTTCGGTG
GTGGGAGACGTGGCATGGCACCAGCAGAATCCGAAGCTGCTAGGCTCGGT
TGGCGACGATAGACAACTCCTCTTCTGGGACACGTCCATGAACGGGTCCA
AGCCGACTACGGTTATCAAGGATCAGAGGGGCATACTTCGGTGGTGGGAG
ACGTGGCATGGCACCAGCAGAATCCGAAGCTGCTAGGCTCGGTTGGCGAC
GATAGACAACTCCTCTTCTGGGACACGTCCATGAACGGGTCCAAGCCGAC
TACGGTTATCAAGGATCCGATGCACCTGCTGGAGAGACACAGCAGCGAGG
CCGGAGACGGAGAGCCGATGCACCTGCTGGAGAGACACAGCAGCGAGGCC
GGAGACGGAGAGGTGCTGGGGGTGCAATGGGCGTCGTTCGACGAGACCAT
CCTGGGGTCGTGCAGCGCGGACAGACGAGTCAAGGTGTGGAGCCTGAGCC
GCATCGGGGAGGAGCAGAGCCCGGAGGACGCGGAGGACGGCCCGCCGGAG
TTGCTCTTCATTCACGGGGGTCACACCAGCCGAGTCGGAGACTTCAGGTG
CTGGGGGTGCAATGGGCGTCGTTCGACGAGACCATCCTGGGGTCGTGCAG
CGCGGACAGACGAGTCAAGGTGTGGAGCCTGAGCCGCATCGGGGAGGAGC
AGAGCCCGGAGGACGCGGAGGACGGCCCGCCGGAGTTGCTCTTCATTCAC
GGGGGTCACACCAGCCGAGTCGGAGACTTCAGATGCATGAACAAAAGGCA
AGGTCACCCCCCGCCCCCGATGCATGAACAAAAGGCAAGGTCACCCCCCG
CCCCCG
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