mRNA_E-siliculosus-1a_F_contig1539.3116.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1539.3116.1
Unique NamemRNA_E-siliculosus-1a_F_contig1539.3116.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1539.3116.1 vs. uniprot
Match: D8LJV4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJV4_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.210e-42
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 3 
Query:    3 DDADWGEPLDSMGDDDGMGMLHAHGRGVYMGSSQRAAEMTSDGPYDDEEEGDDLPVALWKQQRRGHGTLNQ 215
            DDADWGEPLDSMGDDDGMGMLHAHGRGVYMGSSQR AEMTSDGPYDDEEEGDDLPVALW+QQRRGHGTLNQ
Sbjct:  182 DDADWGEPLDSMGDDDGMGMLHAHGRGVYMGSSQRPAEMTSDGPYDDEEEGDDLPVALWRQQRRGHGTLNQ 252
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1539.3116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJV4_ECTSI1.210e-4297.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1539contigE-siliculosus-1a_F_contig1539:150..1428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size183
Model size256
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1539.3116.1prot_E-siliculosus-1a_F_contig1539.3116.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1539 185..1390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928045.6820045-UTR-E-siliculosus-1a_F_contig1539:149..1841622928045.6820045-UTR-E-siliculosus-1a_F_contig1539:149..184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1539 150..184 +
1696318786.2596834-UTR-E-siliculosus-1a_F_contig1539:149..1841696318786.2596834-UTR-E-siliculosus-1a_F_contig1539:149..184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1539 150..184 +
1622928045.7150316-UTR-E-siliculosus-1a_F_contig1539:1390..14281622928045.7150316-UTR-E-siliculosus-1a_F_contig1539:1390..1428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1539 1391..1428 +
1696318786.2826715-UTR-E-siliculosus-1a_F_contig1539:1390..14281696318786.2826715-UTR-E-siliculosus-1a_F_contig1539:1390..1428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1539 1391..1428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928045.6925607-CDS-E-siliculosus-1a_F_contig1539:184..2681622928045.6925607-CDS-E-siliculosus-1a_F_contig1539:184..268Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 185..268 +
1696318786.267387-CDS-E-siliculosus-1a_F_contig1539:184..2681696318786.267387-CDS-E-siliculosus-1a_F_contig1539:184..268Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 185..268 +
1622928045.7036731-CDS-E-siliculosus-1a_F_contig1539:1291..13901622928045.7036731-CDS-E-siliculosus-1a_F_contig1539:1291..1390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 1292..1390 +
1696318786.2750907-CDS-E-siliculosus-1a_F_contig1539:1291..13901696318786.2750907-CDS-E-siliculosus-1a_F_contig1539:1291..1390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 1292..1390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1539.3116.1

>prot_E-siliculosus-1a_F_contig1539.3116.1 ID=prot_E-siliculosus-1a_F_contig1539.3116.1|Name=mRNA_E-siliculosus-1a_F_contig1539.3116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=61bp
MGDDDGMGMLHAHGRGVYMGSSQRAAEMTSDGPYDDEEEGDDLPVALWKQ
QRRGHGTLNQ*
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mRNA from alignment at E-siliculosus-1a_F_contig1539:150..1428+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1539.3116.1 ID=mRNA_E-siliculosus-1a_F_contig1539.3116.1|Name=mRNA_E-siliculosus-1a_F_contig1539.3116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1279bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1539:150..1428+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGACGACGCGGACTGGGGGGAACCGCTCGATTCGATGGGGGATGACGAT
GGGATGGGGATGTTGCACGCCCACGGGCGAGGTGTCTATATGGGGAGTTC
TCAGAGAGCCGCAGAGATGGTGAGCAAGCCGACCTTGTCGGTATATGAGG
TTGTCCCGCCGGCCTCTGTGGAAGGCGGAGCGGTTGCTGTTGTTGTTTTC
ACATTTAAAACTCTCAGAAACCCAATGATCGCGACGTTGTTGCTGTTGCG
CTGTTGTCCTCACGCCAAAAAATCAAGGCCATCTCTTCTCGGTACCTTCT
AGCATCCGTCCTGGTGACGCCTTCCGTGGTCACAGGCCAACTACCCTAGA
AAGGGTGTACACGATAACAATCAAAACGGAAACAAAAACAGGCTCAGGAA
AATCCTCATACGCAATAGCAAATCACAAGTGGTGCGCGGCGATCAACGCT
GTGTCTTTTTTTGTGTCACAATCCCAACCCCCGCTTTTGTGGTGGACGCG
TCTGGTCCTGGTAAACAAATTGTGTGTATGGGCGTGCATTCATGCATCCG
CGTAGAACAAGCACGTTTTGTAGAACTATGTCCTCGGCATCTTAGAGTTT
GAGGTTTTCAAACCGTAAACGAACGTGGTCCTCGAAATAAATCAGCGCGC
TAAGGCTGGCAGCGCAAATTGACGGAATAGTCTGGGTGGGTGTACTCATA
GTCGCGCATGCCGTAGTCGGTAGACCATTGACCTCGCATCCCTACAAGCC
GGGACGGAGTCTGGTGGGATAGGTGAAATCATTTGTTTGTGCTTATACAT
GCTGCTTGGCGAAAGGTCCTAGACCGTTCGACTCTGGATGAATGTAGAGT
GAGACAGCCTTCTGCACGCATACCGGGTGCTTGGTTACACGTCACCTCCC
GTCCCCCTTCCCACTTGCCACCCTCGTGCCGCTCTTCCTGGCTGAGTGCT
TGTTTCGCAACCCCCTGATGAGTAGTTTGCTCACACAAGAAAATCTCGCA
GGACGAGTAAGTGCTGTGTTCTGCACCCGTTTTTCTGTCCACCCGCTGCA
GTTCCTTTGGTGGTGACACAGCAGGGGTAGCAGCAGCAGCAGCAGTGTAG
CTGACTCGTACCCCACTCCTTTGCTTTTGTTTCCCTTTCCAGACTTCGGA
CGGGCCATATGACGACGAGGAGGAGGGGGACGATCTCCCCGTAGCGCTTT
GGAAGCAGCAGAGGCGAGGGCACGGCACCCTCAACCAATGAAGAAACTTG
ATGTCTTAGCTGTTTTACGGGGACGGGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1539:150..1428+

>mRNA_E-siliculosus-1a_F_contig1539.3116.1 ID=mRNA_E-siliculosus-1a_F_contig1539.3116.1|Name=mRNA_E-siliculosus-1a_F_contig1539.3116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1539:150..1428+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGGATGACGATGGGATGGGGATGTTGCACGCCCACGGGCGAGGTGT
CTATATGGGGAGTTCTCAGAGAGCCGCAGAGATGATGGGGGATGACGATG
GGATGGGGATGTTGCACGCCCACGGGCGAGGTGTCTATATGGGGAGTTCT
CAGAGAGCCGCAGAGATGACTTCGGACGGGCCATATGACGACGAGGAGGA
GGGGGACGATCTCCCCGTAGCGCTTTGGAAGCAGCAGAGGCGAGGGCACG
GCACCCTCAACCAATGAACTTCGGACGGGCCATATGACGACGAGGAGGAG
GGGGACGATCTCCCCGTAGCGCTTTGGAAGCAGCAGAGGCGAGGGCACGG
CACCCTCAACCAATGA
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