mRNA_E-siliculosus-1a_F_contig1538.3114.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: A0A6H5KN23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE) HSP 1 Score: 720 bits (1858), Expect = 4.250e-247 Identity = 566/749 (75.57%), Postives = 588/749 (78.50%), Query Frame = 1
Query: 52 MAEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVSLDRSSSXXXXSAGPSYCLRCLYCQWTSEDSGLVAPDPAGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGRGLDRGRGSRLRTGSTNSGGGRGREVESSLFSAAASTTG--------------------------------------PWKVSDLDDAVARRNQVVAAASRSVALPRPPSAAGGGTPAAVSPPWALRGDTDGPDPALWTLSSGHETAGLAERVEESWSSPPWQSPPARGAR-EXXXXXXXXXXXXXXXXXXXXVPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEERERTAGGEGVKKTWFKKDCSAALSVPRITVASLPSSLALLGPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPSLVLRLANPQITLLRLRVATEHGPSTAESDPDGNTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGVVTVRPAGWGEGDWVYLEGREDEIIRQPGDRYRLPRGLLSRADDGGDGDTGSPPGAERSGRAGATPFLLHQQGDVAWVRVPLDMACADKVAAAVKAAAAEALPVVDVRFSLVMGEGEGGGGDDVSMPIAVRFPLSSCPS 2181
M EVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDA+STENRCPHCFECPCCRCVLVPSPVSLDRS+S SAG SYCLRCLYCQWTSEDSGLVA DPAGLAAXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX SRGR DRGR + +V+SSLFS+AAS + P KVSDL++AVARR QVVAAASRSVALP+PP+AAG TPAAVSPPWALRGDTDGPDPALWTLSSGHETAGLAERVE SWSSPP QSPPARGAR + XXXXXXXXXXXXXXXXXXXVPRRVRLRARLGKRCRKDLA G + + L S+ + RT EG+KKT FKKDCSAALSVPRITVASLPSSLALLGPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PSLVLRLANPQITLLRLRVATEHGPSTAESD DGN AA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NAG VTVRPAGWGE DWV+LEGREDEIIRQPGDRYRLPRGLLSRADDGG G TGS PGAERSGRAGATPFLLHQQGDVAWVRVPLD ACAD+VAAA KA ALPV+DVRFSLVMGEG+GGGGDD+SMPIAVRFPLSSCPS
Sbjct: 1 MVEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAVSTENRCPHCFECPCCRCVLVPSPVSLDRSASSFS-SAGTSYCLRCLYCQWTSEDSGLVAQDPAGLAAXXXXXXXXXXXXXXXXXXXXXGALLEAAQQXXXXXXXXXXXXXXXXXX-SRGR--DRGRAAXXXXXXXXXXXXXXXDVDSSLFSSAASISSHTTRAVFAGCAVQVVRTLLAFGTCLQLPSFFFLLTPPLPLKVSDLNNAVARRTQVVAAASRSVALPQPPAAAG--TPAAVSPPWALRGDTDGPDPALWTLSSGHETAGLAERVEGSWSSPPRQSPPARGARGDGXXXXXXXXXXXXXXXXXXXVPRRVRLRARLGKRCRKDLALG---LCLPPPPPALSSKSALGPIAHKHTRRTNRQEGIKKTRFKKDCSAALSVPRITVASLPSSLALLGPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------PSLVLRLANPQITLLRLRVATEHGPSTAESDLDGNIAAAAAATVGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATGVTAAAAPALGAGGG---NAGFVTVRPAGWGEDDWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGGGYTGSLPGAERSGRAGATPFLLHQQGDVAWVRVPLDKACADRVAAAAKAXXXXALPVLDVRFSLVMGEGDGGGGDDISMPIAVRFPLSSCPS 730
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: D7FRF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI) HSP 1 Score: 623 bits (1607), Expect = 1.740e-210 Identity = 531/712 (74.58%), Postives = 550/712 (77.25%), Query Frame = 1
Query: 52 MAEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVSLDRSSSXXXXSAGPSYCLRCLYCQWTSEDSGLVAPDPAGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGRGLDRGRGSRLRTGSTNSGGGRGREVESSLFSAAASTTGPWK-VSDLDDAVARRNQVVAAASRSVALPRPPSAAGGGTPAAVSPPWALRGDTDGPDPALWTLSSGHETAGLAERVEESWSSPPWQSPPARGAREXXXXXXXXXXXXXXXXXXXX-VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEERERTAGGEGVKKTWFKKDCSAALSVPRITVASLPSSLALLGPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPSLVLRLANPQITLLRLRVATEHGPSTAESDPDGNTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGVVTVRPAGWGEGDWVYLEGREDEIIRQPGDRYRLPRGLLSRADDGGDGDTGSPPGAERSGRAGATPFLLHQQGDVAWVRVPLDMACADKVAAAVKAAAAEALPVVDVRFSLVMGEGEGGGGDDVSMPIAVRFPLSSCPS 2181
MAEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMS EN P SS + P R L + + +G + L + XXXXXXXXXXXXX + + + R LR R V GP + VSDLD+AVARR QVV AASRSVALPRPP+A AAVSPPWALR DT GPDPALWTLSSGHETAGLAERVE WSSPP QSPPARGAR XXXXXXXXXXXXXXXXXXXX VPRRVRLRAR+GKRCRKDLAAGRTGILIKATFNPLDGDSSTAK EGVKKTWFKKDCSAALSVPRITVASLPSSLALLGPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PSLVLRLANPQITLLRLRVATE+GPS+AESDP GNTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX N G VTVRPAGWGEGDWV+LEGREDEIIRQPGDRYRLPRGLLSRADDGG GDTGSPPGAERSGRAGATPFLLHQQGDVAWVRVP D ACAD+VAAAVKAAAA LPV+DVRFSLVMGEGEGG GDD+SMPIAVRFPLSSCPS
Sbjct: 1 MAEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSAENS----------------GPARTRASSHRTQRALAPP---RPLERRRVAVATGAARRWSSALCSRRPSKGKRRPPSERGRRRVEGAXXXXXXXXXXXXXVPGFAPGARTAVAAAAAKWIRR---CSLR-----------RRVR----------PGPGRHVSDLDEAVARRAQVVVAASRSVALPRPPAATAAA--AAVSPPWALREDTTGPDPALWTLSSGHETAGLAERVEGPWSSPPRQSPPARGARXXXXXXXXXXXXXXXXXXXXXXVPRRVRLRARVGKRCRKDLAAGRTGILIKATFNPLDGDSSTAK------------EGVKKTWFKKDCSAALSVPRITVASLPSSLALLGPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---PSLVLRLANPQITLLRLRVATENGPSSAESDPAGNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPGFVTVRPAGWGEGDWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGGGDTGSPPGAERSGRAGATPFLLHQQGDVAWVRVPFDKACADRVAAAVKAAAA--LPVLDVRFSLVMGEGEGGSGDDISMPIAVRFPLSSCPS 650
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: W7T460_9STRA (Dynactin p62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T460_9STRA) HSP 1 Score: 105 bits (263), Expect = 9.120e-20 Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 1
Query: 37 NTASSMAEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSTENRCPHCFECPCCRCVLVPSPVSLDRSSSXXXXSAGPSYCLRCLYCQWTSEDS-GLVAPDPAGL 420
N S +V++ DY G+ PL+ +++S S+CLV+ HP S EEVES +C HC ++F +A S+ +RCP CF+CP C L+ +S+D S+ AG Y RC YC+W+S DS GL+ P L
Sbjct: 30 NEGVSDVKVVFTDYQGWWAPLTHLFYSNASQCLVSAHPESSIEEVESFYCSHCLNYFADAEAASSYHRCPRCFDCPQCTSALLI--ISVDEESNHEENDAG--YTFRCGYCRWSSADSIGLIESTPEAL 154
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: A0A7S4DCB8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCB8_HETAK) HSP 1 Score: 66.6 bits (161), Expect = 2.070e-9 Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 1045 PRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEERERTAGGEGVKKTWFKKDCSAALSVPRITVASLPS 1290
P R+ L + +RCR+D+ G++GILIK + NP++GDSS RG+ W+KKD SA VP+IT+ SLPS
Sbjct: 13 PHRLPLLGKRARRCRRDVEDGKSGILIKPSVNPMEGDSSQPSNRGK--------------WWKKDASAIHFVPQITIVSLPS 80
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: A0A7S2ECG0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ECG0_TRICV) HSP 1 Score: 66.6 bits (161), Expect = 1.780e-8 Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 1042 VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEERERTAGGEGVKKTWFKKDCSAALSVPRITV 1275
+P + LRAR +RCR +LAAGRTGIL+K NPL+GDSS G+ W+KKD SA SVP++ V
Sbjct: 90 LPLPIPLRARKSRRCRAELAAGRTGILVKPKVNPLEGDSSLRSGHGQ--------------WWKKDSSAIHSVPKVQV 153
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: A0A7S4MWN0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWN0_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.020e-8 Identity = 102/416 (24.52%), Postives = 140/416 (33.65%), Query Frame = 1
Query: 55 AEVLYGDYNGYLRPLSLMYFSLDSRCLVAD----HPRSVQEEVESHFCPHCTSFFRTPDAMSTE--NRCPHCFECPCCRCVLVPSPVSLDRSSSXXXXSAGPSYCLRCLYCQWTSEDSGLVAPDPAGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGRGLDRGRGSRLRTGSTNSGGGRGREVESSLFSA-AASTTGP-WKVSDLDDAVARRNQVVAAASRSVALPRPPSAAGGGTPAAVSPPWA-LRGDTDGPDPALWTLSSGHETAGLAERVEESWSSPPWQSPPARGAREXXXXXXXXXXXXXXXXXXXXVPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEERERTAGGEGVKKTWFKKDCSAALSVPRITV 1275
A VLY D+ G+ PL L Y + SR L + S E++S +CP C +F A +E RCP + C C L + + + +C YCQWTS + AP G L G G R R R R+ E S S S G W + L++A+A + + W +R DG + G E +AE + P +P A+ +P V LRAR +RCR++LA GRTGIL+K NPL+GDSS G+ W+KKD SA SVPR++V
Sbjct: 19 AAVLYVDHAGHPAPLGLCYHATASRFLSSSIDDRSSPSTLTEIDSAYCPQCLAFHDAATASGSELRGRCP---KGGCRLCPLCGAVCGVAILPEEDGDGTKHAIVYQCGYCQWTSNSCSVSAPVSVGEGGSVSKEDAAGATEALARALADRTEAVSGDANSVFAK-------------------LVAGWGERSRDEER-----RKRQPEESATSRRGVSAAGEGWGIDTLEEAIAEKKK----------------------------DWLDVRQVIDG----IALTKLGPEEDVVAEVTPRADGGGPRPTPAQASAQNAISPAIVSSISDL-------LPLPVPLRARKSRRCRRELAEGRTGILVKPKVNPLEGDSSLRSGHGQ--------------WWKKDSSAVHSVPRVSV 354
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: K0SN59_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SN59_THAOC) HSP 1 Score: 66.6 bits (161), Expect = 1.430e-7 Identity = 35/74 (47.30%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 1054 VRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEERERTAGGEGVKKTWFKKDCSAALSVPRITV 1275
V RAR+ +RCR +LAAGRTGIL+K NPL+GDSS G+ WFKKD SA VPR+ +
Sbjct: 279 VPYRARVSRRCRAELAAGRTGILVKPKLNPLEGDSSLRTGHGQ--------------WFKKDSSATQVVPRVQI 338
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: A0A7S2EC45_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EC45_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 2.180e-7 Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 1042 VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEERERTAGGEGVKKTWFKKDCSAALSVPRITV 1275
+P ++LR R +RCR +LAAGRTGIL+K NPL+GDSS G+ W+KKD SA VPR+ V
Sbjct: 123 LPVPIQLRPRKSRRCRAELAAGRTGILVKPKLNPLEGDSSLRSGHGQ--------------WYKKDSSAIHVVPRVQV 186
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: A0A6V2CU51_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2CU51_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 3.580e-7 Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 1042 VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEERERTAGGEGVKKTWFKKDCSAALSVPRITV 1275
+P ++LR R +RCR +LAAGRTGIL+K NPL+GDSS G+ W+KKD SA VPR+ V
Sbjct: 300 LPVPIQLRPRKSRRCRAELAAGRTGILVKPKLNPLEGDSSLRSGHGQ--------------WYKKDSSAIHVVPRVQV 363
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Match: A0A7S2R1C9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R1C9_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.840e-5 Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1
Query: 1042 VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEERERTAGGEGVKKTWFKKDCSAALSVPRITV 1275
+P + L R +RCRK+LAAGRTGIL+K NPL+GDSS + W+KKD SA VP++T+
Sbjct: 19 LPYPIPLHTRKIRRCRKELAAGRTGILMKPKPNPLEGDSSLRSGHDQ--------------WWKKDSSAIHVVPKVTL 82 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1538.3114.1 >prot_E-siliculosus-1a_F_contig1538.3114.1 ID=prot_E-siliculosus-1a_F_contig1538.3114.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3114.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=728bp MLFVLSCDLPCRNTASSMAEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPback to top mRNA from alignment at E-siliculosus-1a_F_contig1538:25194..30358+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1538.3114.1 ID=mRNA_E-siliculosus-1a_F_contig1538.3114.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3114.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1538:25194..30358+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1538:25194..30358+ >mRNA_E-siliculosus-1a_F_contig1538.3114.1 ID=mRNA_E-siliculosus-1a_F_contig1538.3114.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3114.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4368bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1538:25194..30358+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |