mRNA_E-siliculosus-1a_F_contig1538.3112.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1538.3112.1
Unique NamemRNA_E-siliculosus-1a_F_contig1538.3112.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1538contigE-siliculosus-1a_F_contig1538:14824..16379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size429
Model size431
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1538.3112.1prot_E-siliculosus-1a_F_contig1538.3112.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1538 14825..16379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928045.2026658-CDS-E-siliculosus-1a_F_contig1538:14824..149651622928045.2026658-CDS-E-siliculosus-1a_F_contig1538:14824..14965Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1538 14825..14965 -
1696318786.047669-CDS-E-siliculosus-1a_F_contig1538:14824..149651696318786.047669-CDS-E-siliculosus-1a_F_contig1538:14824..14965Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1538 14825..14965 -
1622928045.214794-CDS-E-siliculosus-1a_F_contig1538:15432..155791622928045.214794-CDS-E-siliculosus-1a_F_contig1538:15432..15579Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1538 15433..15579 -
1696318786.0576952-CDS-E-siliculosus-1a_F_contig1538:15432..155791696318786.0576952-CDS-E-siliculosus-1a_F_contig1538:15432..15579Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1538 15433..15579 -
1622928045.2247074-CDS-E-siliculosus-1a_F_contig1538:16238..163791622928045.2247074-CDS-E-siliculosus-1a_F_contig1538:16238..16379Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1538 16239..16379 -
1696318786.0655532-CDS-E-siliculosus-1a_F_contig1538:16238..163791696318786.0655532-CDS-E-siliculosus-1a_F_contig1538:16238..16379Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1538 16239..16379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1538.3112.1

>prot_E-siliculosus-1a_F_contig1538.3112.1 ID=prot_E-siliculosus-1a_F_contig1538.3112.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3112.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=143bp
EAEAAAAVALEELRAEAQGMEREIAEQERLLSAYQKENERLVDKAKKEKM
LHEEERVSLYRDRERLNKELNRLTNQMGGGGGSGSGSPQATATAVQARLR
AESALVEAQARESDLMFEVDKLRTTKRGLEAKAAQAAAAAAKF
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mRNA from alignment at E-siliculosus-1a_F_contig1538:14824..16379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1538.3112.1 ID=mRNA_E-siliculosus-1a_F_contig1538.3112.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3112.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1556bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1538:14824..16379- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAGCTGAGGCGGCGGCGGCGGTGGCGTTGGAGGAGCTCAGGGCGGAGGC
GCAGGGGATGGAGAGGGAGATCGCGGAGCAGGAGAGGCTGCTGAGCGCGT
ACCAGAAGGAGAACGAGAGGCTCGTCGACAAGGCGAAGAAGGTAGCAGAG
AGAAAGAGGAAATGCACTGCTTGCTGTACTAGTAGACAACGGAGAGAGCA
ACCTTCACTTCTGCTCCGCCCCGCCCCCCTAGGCGCCTTGCGGAACAGGT
CTTGCGTAGTAGGGCGCACGCCGCCTCGCCGCCGCGCCTGGCGCTGCAGC
AGTAATACGCGCACGCTGGTCCGCGAAGGTCCATTGGACGAGACATGCCG
CGTCCCTCACTCCCCGGGTATTGGCGGTACTGCTGTATCCATTTAGGAAC
GGGAGGTCCGCGCTCGAAACGCTGTCTAGTGCGTGAATGGTCATGAGTAC
ACCCCCCCCCTCGCCCCCTCGCCCCCTCCCCCTCTGCCGCGGTCGCCTCT
CGTTTGCTTATCGCGGACGAAAATCTAGCGCACAGATGGTCGTCAGTGAC
CCCCCCACCTGCTTCCCTCTGGCGCAGTCGCCTTTCTGTATAGTCTATGG
TGGTATAATAAAAAGCAGCGCACAGACGGTTATGATTACCGTCCCACCCC
CACCCCCTTTGCCGCAGTCGCCCTTCGATTTATCGCGGTCGAGAAACCAG
CACGTGTCACAGATGGCCATGAGTGGCCCCCGACCCCCCCCACCCCCCTA
CCCCCTCTGCCGCCGTGGTCGCCTTGGTTGGGTGTTTATTTGTCGCGCAG
GAGAAGATGCTTCACGAGGAGGAGCGCGTGTCGCTGTACCGGGACAGAGA
ACGGCTGAACAAGGAGTTGAACCGGCTCACCAACCAGATGGGCGGCGGGG
GTGGGAGTGGGTCGGGCAGTCCCCAGGCGACGGCGACAGCGGTACAGGTA
CATATCTGCAACGGCTATTTTTGATCAAGGGCATTCTGTGTTTTTGTTTT
GTTTTGTTTGTTGTAGGGTTAGGGCACTTTGTGTCTTGACAACCTGATCC
TCAACACCTTACAATTCCAAGTTCTCACAAGCGGGTGAGAGGGGGTTTCC
GGATGCGAAGAAACGTGTAGATGTTTCCCGTTCGACACTCACTGTACGGT
AACATGGTGTGAAACTGCTGTAGTATTTGTCATTTTTGTTCATATTTGTT
ACTCCTTTTTTAGTACTCTCTAATGAGTACGTATAATTTTTTCACTCTAC
GTTTTTGTGAGAAAAAAATTGTTGTTATGAAGTATAAGTTTTGTTAATTC
TTGGGCGCTGAAATATATCAAACTTTTGTGAGACAATATTTTTGGTACGA
AGTTTATGATTTTTTTGGGCATTGAAATATAATGAGTCATAATCTTATAC
TTCTCATATATCAGGCTAGGCTCCGTGCGGAGTCGGCTCTGGTAGAGGCG
CAGGCCCGGGAATCAGACCTGATGTTCGAGGTCGACAAGCTCAGGACGAC
CAAGCGGGGGCTCGAGGCTAAAGCCGCTCAGGCCGCCGCCGCCGCCGCCA
AGTTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1538:14824..16379-

>mRNA_E-siliculosus-1a_F_contig1538.3112.1 ID=mRNA_E-siliculosus-1a_F_contig1538.3112.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3112.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1538:14824..16379- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAGCTGAGGCGGCGGCGGCGGTGGCGTTGGAGGAGCTCAGGGCGGAGGC
GCAGGGGATGGAGAGGGAGATCGCGGAGCAGGAGAGGCTGCTGAGCGCGT
ACCAGAAGGAGAACGAGAGGCTCGTCGACAAGGCGAAGAAGGAAGCTGAG
GCGGCGGCGGCGGTGGCGTTGGAGGAGCTCAGGGCGGAGGCGCAGGGGAT
GGAGAGGGAGATCGCGGAGCAGGAGAGGCTGCTGAGCGCGTACCAGAAGG
AGAACGAGAGGCTCGTCGACAAGGCGAAGAAGGAGAAGATGCTTCACGAG
GAGGAGCGCGTGTCGCTGTACCGGGACAGAGAACGGCTGAACAAGGAGTT
GAACCGGCTCACCAACCAGATGGGCGGCGGGGGTGGGAGTGGGTCGGGCA
GTCCCCAGGCGACGGCGACAGCGGTACAGGAGAAGATGCTTCACGAGGAG
GAGCGCGTGTCGCTGTACCGGGACAGAGAACGGCTGAACAAGGAGTTGAA
CCGGCTCACCAACCAGATGGGCGGCGGGGGTGGGAGTGGGTCGGGCAGTC
CCCAGGCGACGGCGACAGCGGTACAGGCTAGGCTCCGTGCGGAGTCGGCT
CTGGTAGAGGCGCAGGCCCGGGAATCAGACCTGATGTTCGAGGTCGACAA
GCTCAGGACGACCAAGCGGGGGCTCGAGGCTAAAGCCGCTCAGGCCGCCG
CCGCCGCCGCCAAGTTTGCTAGGCTCCGTGCGGAGTCGGCTCTGGTAGAG
GCGCAGGCCCGGGAATCAGACCTGATGTTCGAGGTCGACAAGCTCAGGAC
GACCAAGCGGGGGCTCGAGGCTAAAGCCGCTCAGGCCGCCGCCGCCGCCG
CCAAGTTT
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