mRNA_E-siliculosus-1a_F_contig15376.3107.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15376.3107.1
Unique NamemRNA_E-siliculosus-1a_F_contig15376.3107.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15376.3107.1 vs. uniprot
Match: D7FWS7_ECTSI (Deoxyhypusine hydroxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWS7_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.970e-42
Identity = 73/80 (91.25%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TCQLALDLIAWRRKQGTSPCATGTGGGGNADGRLDANPYLSVDPAPSCGEGSGGERVGEGTEEMGKRLRDGDRTLFERYR 240
            TCQLALDLIAWRRKQGTSP AT TGGGG AD  LDANPYLSVDPAPSCGEGSGGE VGEGTEEMGKR+RDGDRTLFERYR
Sbjct:  130 TCQLALDLIAWRRKQGTSPYATATGGGGKADRGLDANPYLSVDPAPSCGEGSGGEGVGEGTEEMGKRVRDGDRTLFERYR 209
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BLAST of mRNA_E-siliculosus-1a_F_contig15376.3107.1 vs. uniprot
Match: A0A835ZDK9_9STRA (Deoxyhypusine hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.110e-7
Identity = 34/80 (42.50%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:    1 TCQLALDLIAWRRKQGTSPCATGTGGGGNADGRLDANPYLSVDPAPSCGEGSGGERVGEGTEEMGKRLRDGDRTLFERYR 240
            TCQLALDLI +R +Q                  LDANPYLS+DPAPSC +           EE+ ++L D    LF RYR
Sbjct:  135 TCQLALDLIGYRNRQSEDTATP-----------LDANPYLSIDPAPSCPKEVP-------VEELRRQLLDASLPLFARYR 196
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15376.3107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWS7_ECTSI2.970e-4291.25Deoxyhypusine hydroxylase n=2 Tax=Ectocarpus TaxID... [more]
A0A835ZDK9_9STRA4.110e-742.50Deoxyhypusine hydroxylase n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15376contigE-siliculosus-1a_F_contig15376:475..717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size243
Model size243
Exons1
Ec32 orthologEc-16_004240.1
Ec32 ortholog descriptionArmadillo-like helical
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EC1.14.99.29,2.1.1.17
EggNOG OGsCOG1413@1,KOG0567@2759
EggNOG free text desc.deoxyhypusine monooxygenase activity
GOsGO:0000226,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006417,GO:0006464,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0008152,GO:0008283,GO:0008612,GO:0009058,GO:0009268,GO:0009628,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010608,GO:0012505,GO:0016020,GO:0016043,GO:0016491,GO:0016705,GO:0018193,GO:0018205,GO:0019135,GO:0019222,GO:0019538,GO:0030447,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031984,GO:0032268,GO:0034248,GO:0036176,GO:0036177,GO:0036178,GO:0036211,GO:0040007,GO:0042175,GO:0042710,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0046872,GO:0046914,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051604,GO:0051703,GO:0051704,GO:0055114,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090605,GO:0090609,GO:0098827,GO:1901564,GO:2000112,GO:2000765
KEGG ModuleM00091
KEGG Pathwayko00564,ko01100,ko01110,ko04919,ko04974,map00564,map01100,map01110,map04919,map04974
KEGG ReactionR02056
KEGG TC2.A.1.13
KEGG koko:K06072,ko:K08187,ko:K16369
KEGG rclassRC00003,RC00060
Preferred nameLIA1
Seed eggNOG ortholog2880.D7FWS7
Seed ortholog evalue2.4e-34
Seed ortholog score151.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928044.8901732-CDS-E-siliculosus-1a_F_contig15376:474..7171622928044.8901732-CDS-E-siliculosus-1a_F_contig15376:474..717Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15376 475..717 -
1696318785.976224-CDS-E-siliculosus-1a_F_contig15376:474..7171696318785.976224-CDS-E-siliculosus-1a_F_contig15376:474..717Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15376 475..717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15376.3107.1prot_E-siliculosus-1a_F_contig15376.3107.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15376 475..717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15376.3107.1

>prot_E-siliculosus-1a_F_contig15376.3107.1 ID=prot_E-siliculosus-1a_F_contig15376.3107.1|Name=mRNA_E-siliculosus-1a_F_contig15376.3107.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=81bp
TCQLALDLIAWRRKQGTSPCATGTGGGGNADGRLDANPYLSVDPAPSCGE
GSGGERVGEGTEEMGKRLRDGDRTLFERYR*
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mRNA from alignment at E-siliculosus-1a_F_contig15376:475..717-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15376.3107.1 ID=mRNA_E-siliculosus-1a_F_contig15376.3107.1|Name=mRNA_E-siliculosus-1a_F_contig15376.3107.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=243bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15376:475..717- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGTGCCAGCTGGCGTTGGACCTGATAGCCTGGCGGCGCAAGCAAGGGAC
CAGTCCTTGTGCAACCGGGACAGGAGGCGGGGGCAACGCAGATGGGAGGC
TAGACGCGAACCCATACCTATCCGTGGACCCCGCGCCCAGCTGCGGCGAG
GGTAGCGGAGGGGAACGGGTCGGGGAAGGGACGGAGGAGATGGGGAAGAG
GCTTCGCGACGGAGACAGGACCCTCTTTGAGAGATACAGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15376:475..717-

>mRNA_E-siliculosus-1a_F_contig15376.3107.1 ID=mRNA_E-siliculosus-1a_F_contig15376.3107.1|Name=mRNA_E-siliculosus-1a_F_contig15376.3107.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15376:475..717- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGTGCCAGCTGGCGTTGGACCTGATAGCCTGGCGGCGCAAGCAAGGGAC
CAGTCCTTGTGCAACCGGGACAGGAGGCGGGGGCAACGCAGATGGGAGGC
TAGACGCGAACCCATACCTATCCGTGGACCCCGCGCCCAGCTGCGGCGAG
GGTAGCGGAGGGGAACGGGTCGGGGAAGGGACGGAGGAGATGGGGAAGAG
GCTTCGCGACGGAGACAGGACCCTCTTTGAGAGATACAGGTGAACGTGCC
AGCTGGCGTTGGACCTGATAGCCTGGCGGCGCAAGCAAGGGACCAGTCCT
TGTGCAACCGGGACAGGAGGCGGGGGCAACGCAGATGGGAGGCTAGACGC
GAACCCATACCTATCCGTGGACCCCGCGCCCAGCTGCGGCGAGGGTAGCG
GAGGGGAACGGGTCGGGGAAGGGACGGAGGAGATGGGGAAGAGGCTTCGC
GACGGAGACAGGACCCTCTTTGAGAGATACAGGTGA
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