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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1537.3105.1 vs. uniprot
Match: A0A6H5JGA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA4_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 4.000e-15 Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 2
Query: 413 NENHEVNRLLAKPSNFEAWTRVSDDPDTLALAKSIGDYLG 532
NE+HEVNRLLA PSNF+AWTRVSDDPD+L LAKSIGDYLG
Sbjct: 30 NESHEVNRLLANPSNFDAWTRVSDDPDSLMLAKSIGDYLG 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 402 |
| Model size | 677 |
| Exons | 3 |
| Ec32 ortholog | Ec-23_001720.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1537.3105.1 >prot_E-siliculosus-1a_F_contig1537.3105.1 ID=prot_E-siliculosus-1a_F_contig1537.3105.1|Name=mRNA_E-siliculosus-1a_F_contig1537.3105.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=134bp
MDSPSMEAVDLDYASFRQQGSLQRLCRKRSDSEVVWSGLAPAVSKNSAMV
LGLTRRRLYSTSSRTSTKTTSRRRRKQLHLFHASPRRTRVANGLASAGKI
SGPIPPGGPQRTCSSTTRVHRITRMRTTRSTAC* back to topmRNA from alignment at E-siliculosus-1a_F_contig1537:9759..12000+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1537.3105.1 ID=mRNA_E-siliculosus-1a_F_contig1537.3105.1|Name=mRNA_E-siliculosus-1a_F_contig1537.3105.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2242bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1537:9759..12000+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGTACGCTGTGGCGCTGTGTTGCATACCAGGGAAAGCACGATGGACTCA
CCCTCAATGGAGGCCGTAGACCTAGACTATGCGTCTTTCCGGCAGCAGGG
TTCGCTGCAGCGACTATGTAGAAAGAGAAGCGACAGCGAGGTGGTGTGGA
GTGGACTTGCTCCTGCTGTGAGCAAGAACTCGGCGATGGTTCTGGGGTTG
ACGCGGCGACGTCTATACAGCACGAGCTCTCGGACAAGCACAAAGAGTGA
GTAGTGAGTAGTGCGGACGAGTGACGGCTTTGGGGGTGTTGTTTTACGGC
GAACGCTGCCTCGTGTGCTATTCTCTCGACGTCTCTAACATGAGAACCGA
TATTGTAGTATACATTGTACTTCAACCCAGCACAGCAAACGCCGCTGCGT
GCTTGCCGTTGGTGACACAATACTGTATATCATACCCCCCTCGACCAATT
TTCAAAGCTCGACTACTGGCACTACAATATACTCCGCAGTAGAAAGAGAG
GCGGTGTCGTGAATGGTGGCGTTGAAACCGCCTCCTCGAGGTGTTTCCGA
AAAAAATGTCATCTGATTTTGGCATTACTTCACTTCAACACATCCCGTTC
GACTGTGGTCTTACCTCGAATGGGCAGTCTTTCTGTGTTTGTATTTTATT
TTTCATAACATGTGCAGGAGTCCAGCGGAGACCACGCTCGGGGGGTGTGG
TATCCTATGTCACCAACGAGACCGCTACGGTGATGGCGTACAGCAGCAGT
AGCTTTGGTCTAGGGCCATGAGGATGATGAGCGCTGGTTACCCCTAACCC
TAAGCTTGAACAGAGCGTTGCATCGACGCAGTCCATTCCGGCAGCAGCAG
CGGCAGCAACAGCGGCAACAGCGGCAGCTGGTGTACAGCATTGCACGGGC
GGGAAGAAAGTGCGCGCAAACAAACAAAAACGGAACATTCCACGGGTACG
TAACATTCCACCTACAGGTGCCCCTGGTTGTTGCTCGTACGTCCGCACTA
CAGCAGTAGATCTATAGCTTTGAATGCCAAGAGGTTGGGCCGTGTTGACG
CTGGCCGCTCCTTCCCTCTTCGACAACCCTACTGCATGACGTGAGCAGCC
ACATCGAGGCGGAGAAGGAAGCAGCTCCACCTGTTTCACGCATCGCCGCG
AAGAACAAGAGTGGCAAATGGACTTGCGAGTGCGGGAAAGATCTCGGGTC
CGATCCCACCCGGCGGGCCGCAGCGCACGTGCAGCAGCACCACGAGGGTT
CACAGGATCACCAGTGAGTACAGGCGCAACGTTTCCGTGAACAATAAAAC
AGTAGTGCTTGCTGATGCACGACTCGACACCACCGAAAAGTTCGGTGCAT
AACTAGGTACATACACGAGATTTTGCAGAAGACGTGCATACAGTCGAAAA
AAAGGCGTTGTTTGCATGGCCAGGCGAGCCTTGGAAGCGACGGCGAGAAG
CAGGACAGATACGATCATTGAAGACAGCCCTTTCGAGGAAAGAATACCAC
AGCATTCGAAGGAATGTGTTGTCAGAAGTGAGTGGGGGAAGAGAGCCTTC
TTCAGCCTTCTTTGGTGACTTATTTCCCCCCGAGACCTTGAAAAGGCTCG
TCTGACCTGTCTCAAGTGCGTCTGTCGTAGGTCCTGCCGTCTACGTAGAA
CCATCAACGATCACGTCGCCGCGTTTTGTTCTTAGCGTGTTGTTTTGCCC
CGAGATCTTGAAAAGGCTGCCGTTTCTCAACAATGTCTCTCCTGCAGTTT
TTGTAGAACCATGACCGATCACCTCGCGACAACGGAGACGCTAGAATAGC
GCGTATGTGTGCAAACATGAACTTGTTTTGCTTTTTGTGAAGGAACAGTA
TGAAAGAAAAGGCACTGCAGTGTAGCGGTTCTGCTCGTTAGTCTAGACAC
CACGAACAAATATTGACGATACATGTATCGCGCCCGCAACCCTGTACGCT
TGATGCACCTCCCTCCCCCCTCTCAGGAATGAGAACCACGAGGTCAACCG
CTTGCTAGCCAAGCCCTCCAACTTTGAGGCCTGGACCAGAGTATCAGACG
ACCCGGATACCCTGGCGCTAGCCAAGAGCATCGGCGACTACCTCGGGTGA
TTAGTGCTCTAGTGGCGAGAGAGGGCCCCCACGTTTCGCGTTTTTTTTTG
CACGGTGGGGCAGTGTGCTCGGCTGGGGGTACAGCGGAGGCAGTCACGCG
CGCGCGTGCGGAGGAGGGAATTCGCGGATGTGTTCGAGGATG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1537:9759..12000+ >mRNA_E-siliculosus-1a_F_contig1537.3105.1 ID=mRNA_E-siliculosus-1a_F_contig1537.3105.1|Name=mRNA_E-siliculosus-1a_F_contig1537.3105.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1537:9759..12000+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACTCACCCTCAATGGAGGCCGTAGACCTAGACTATGCGTCTTTCCG
GCAGCAGGGTTCGCTGCAGCGACTATGTAGAAAGAGAAGCGACAGCGAGG
TGGTGTGGAGTGGACTTGCTCCTGCTGTGAGCAAGAACTCGGCGATGGTT
CTGGGGTTGACGCGGCGACGTCTATACAGCACGAGCTCTCGGACAAGCAC
AAAGAATGGACTCACCCTCAATGGAGGCCGTAGACCTAGACTATGCGTCT
TTCCGGCAGCAGGGTTCGCTGCAGCGACTATGTAGAAAGAGAAGCGACAG
CGAGGTGGTGTGGAGTGGACTTGCTCCTGCTGTGAGCAAGAACTCGGCGA
TGGTTCTGGGGTTGACGCGGCGACGTCTATACAGCACGAGCTCTCGGACA
AGCACAAAGACCACATCGAGGCGGAGAAGGAAGCAGCTCCACCTGTTTCA
CGCATCGCCGCGAAGAACAAGAGTGGCAAATGGACTTGCGAGTGCGGGAA
AGATCTCGGGTCCGATCCCACCCGGCGGGCCGCAGCGCACGTGCAGCAGC
ACCACGAGGGTTCACAGGATCACCACCACATCGAGGCGGAGAAGGAAGCA
GCTCCACCTGTTTCACGCATCGCCGCGAAGAACAAGAGTGGCAAATGGAC
TTGCGAGTGCGGGAAAGATCTCGGGTCCGATCCCACCCGGCGGGCCGCAG
CGCACGTGCAGCAGCACCACGAGGGTTCACAGGATCACCAGAATGAGAAC
CACGAGGTCAACCGCTTGCTAGGAATGAGAACCACGAGGTCAACCGCTTG
CTAG back to top
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