mRNA_E-siliculosus-1a_F_contig15343.3097.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15343.3097.1
Unique NamemRNA_E-siliculosus-1a_F_contig15343.3097.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: A0A0D5M7A7_9GAMM (Chromosome partition protein Smc n=39 Tax=root TaxID=1 RepID=A0A0D5M7A7_9GAMM)

HSP 1 Score: 354 bits (908), Expect = 9.160e-110
Identity = 276/326 (84.66%), Postives = 288/326 (88.34%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQSREQLQQRRMEVQALALKAATQDEQL 978
            EWLASIHYT TA+EAE QVAHLAPGESVVS+DGVW GRGWLHQQANGEGIDGLLLTRRRY EL+A+RE  EEALALAEEQCEA  ET          Q+EQERAHATTLQQLAVK   XXXXXXXXXXXXXXXX         EAEL LTLDEQRARWHV+MEQLES+A   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RS Q+RS+D EERL+LRIAELEESREML+EPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLR DELARQQHERNLEQSREQLQQRRM+VQALALKAATQDEQL
Sbjct:  600 EWLASIHYTQTAEEAEAQVAHLAPGESVVSQDGVWLGRGWLHQQANGEGIDGLLLTRRRYDELSAQRESEEEALALAEEQCEAARETXXXXXXXXXXQAEQERAHATTLQQLAVKXXXXXXXXXXXXXXXXXXXEELAQLQQDEAELALTLDEQRARWHVAMEQLESTAEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSQQARSNDSEERLSLRIAELEESREMLVEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRNDELARQQHERNLEQSREQLQQRRMDVQALALKAATQDEQL 925
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BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: A0A0P7Y2E7_9GAMM (Chromosome partition protein Smc n=9 Tax=Halomonas TaxID=2745 RepID=A0A0P7Y2E7_9GAMM)

HSP 1 Score: 322 bits (825), Expect = 7.730e-98
Identity = 242/326 (74.23%), Postives = 258/326 (79.14%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQSREQLQQRRMEVQALALKAATQDEQL 978
            EWLASIHY   A EA+   A LAPGESVV+RDGVWRGRGWLHQQANGEG+D LL+TRRRYAEL A+REQ EEALA  E QCEA ++TIE LE  RE Q+E+ERAHA T QQLA+KE S                         EAEL LTLDEQRARWH +MEQL+++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LRS Q+RSSD E RL  RI  LE SRE LLEPDELA EELEELLHQREQQE RLN TRQQAQ LAEQLR DELARQQHERNLEQSREQLQQRRM+VQALALKA TQDEQL
Sbjct:  599 EWLASIHYAENAAEADALAASLAPGESVVTRDGVWRGRGWLHQQANGEGVDALLVTRRRYAELAARREQDEEALAAVEAQCEAASDTIETLEHRREQQAEEERAHAATRQQLAIKEHSLAQRLEHLESRASELNDELRQLQEDEAELALTLDEQRARWHEAMEQLDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSLRSQQARSSDSEARLVERIEALEASRETLLEPDELAAEELEELLHQREQQEQRLNDTRQQAQTLAEQLRNDELARQQHERNLEQSREQLQQRRMDVQALALKATTQDEQL 924
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BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: A0A1U9RC43_9GAMM (Chromosome partition protein Smc n=13 Tax=Halomonas TaxID=2745 RepID=A0A1U9RC43_9GAMM)

HSP 1 Score: 298 bits (762), Expect = 7.110e-89
Identity = 226/326 (69.33%), Postives = 249/326 (76.38%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQSREQLQQRRMEVQALALKAATQDEQL 978
            EWLASI+Y +T +EA   +  LAPGESVVSR+GVWRGRGWLHQQANGEG+D LL+TRRR+ EL A+REQ+EEALAL +EQC+A +E IE LE +RE Q EQERAHA  LQQ AVKE+                          EAELTLTL+EQRARWHV+MEQLE++A        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    Q+RSSD EER+ LRIAELEESREML+EPDELAGEELEELLHQREQQE RLN TRQQAQALAEQLR DELA              LQQRRM+VQALALKAATQDEQL
Sbjct:  599 EWLASIYYVDTNEEASTLLPALAPGESVVSREGVWRGRGWLHQQANGEGVDALLITRRRFDELAAQREQVEEALALLDEQCDAASEAIETLELTREQQVEQERAHAAILQQFAVKEQRLAQHLEHLEGRATELDDELAQLQESEAELTLTLEEQRARWHVAMEQLEAAAESRETSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQARSSDSEERILLRIAELEESREMLVEPDELAGEELEELLHQREQQERRLNDTRQQAQALAEQLRNDELAXXXXXXXXXXXXXXLQQRRMDVQALALKAATQDEQL 924
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BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: A0A2D6PK56_HALSX (Chromosome segregation protein SMC (Fragment) n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A2D6PK56_HALSX)

HSP 1 Score: 278 bits (710), Expect = 6.190e-83
Identity = 251/326 (76.99%), Postives = 269/326 (82.52%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQSREQLQQRRMEVQALALKAATQDEQL 978
            EWLASIHY +TA+ AE  +A LAPGESVVS+DGVWRGRGWLHQQ+NGEG+D LL+TRRR+ EL A+RE+ EEALAL +EQCEA NETIE LE +RE Q+EQER HA T QQLAV    XXXXXXXXXXXXXXXXXXXXXXXXX      TL+EQRARWH +ME      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    QSRSSD EERL+LRIAELEESREML+EPDELA EELEELLHQREQQE RLN TRQQAQALAEQLR DELA              LQQRRM+VQALALKAATQDEQL
Sbjct:  327 EWLASIHYVDTAEAAEALLARLAPGESVVSQDGVWRGRGWLHQQSNGEGVDALLVTRRRFEELAAERERAEEALALLDEQCEAANETIETLELTREQQAEQERDHAATRQQLAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLEEQRARWHTAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSRSSDTEERLSLRIAELEESREMLVEPDELAAEELEELLHQREQQERRLNETRQQAQALAEQLRNDELAXXXXXXXXXXXXXXLQQRRMDVQALALKAATQDEQL 652
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: A0A0D7UZ10_9GAMM (Chromosome partition protein Smc n=38 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D7UZ10_9GAMM)

HSP 1 Score: 276 bits (707), Expect = 3.940e-81
Identity = 251/326 (76.99%), Postives = 268/326 (82.21%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQSREQLQQRRMEVQALALKAATQDEQL 978
            EWLASIHY +TAD AE  +  LAPGESVVS+DGVWRGRGWLHQQ+NGEG+D LL+TRRR+ EL A+RE+ EEALAL +EQCEA NETIE LE +RE Q+EQER HA T QQLAV    XXXXXXXXXXXXXXXXXXXXXXXXX      TL+EQRARWH +ME      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    QSRSSD EERL+LRIAELEESREML+EPDELA EELEELLHQREQQE RLN TRQQAQALAEQLR DELA              LQQRRM+VQALALKAATQDEQL
Sbjct:  602 EWLASIHYVDTADAAEALLPTLAPGESVVSQDGVWRGRGWLHQQSNGEGVDALLVTRRRFEELAAERERAEEALALLDEQCEAANETIETLELTREQQAEQERDHAATRQQLAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLEEQRARWHTAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSRSSDTEERLSLRIAELEESREMLVEPDELAAEELEELLHQREQQERRLNETRQQAQALAEQLRNDELAXXXXXXXXXXXXXXLQQRRMDVQALALKAATQDEQL 927
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BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: A0A1R4HY93_9GAMM (Chromosome partition protein Smc n=12 Tax=Halomonas TaxID=2745 RepID=A0A1R4HY93_9GAMM)

HSP 1 Score: 268 bits (684), Expect = 6.270e-78
Identity = 186/326 (57.06%), Postives = 204/326 (62.58%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQSREQLQQRRMEVQALALKAATQDEQL 978
            EWLASIHY  +  EAEQ    LA G+SVVSRDGVWRGRGWLHQQANGEG+D LL+TRRR+ EL A REQ E+ALALAEEQCE  +ETIEALE SRE Q+EQER HAT++QQLA+KERS                         EA LTLTL+EQRARW+V+ME LE++A                                     XXXXXXXXXX        SD            E SRE LLEPDELAGEELEELLHQREQQE RL  TRQQAQ+LAEQLR DELAR             LQQRRM+VQALALKAATQDEQL
Sbjct:  600 EWLASIHYVESGAEAEQLAPGLAAGDSVVSRDGVWRGRGWLHQQANGEGVDALLVTRRRFKELDALREQDEDALALAEEQCETTSETIEALELSREQQAEQERGHATSVQQLAIKERSAAQKLEHLESRATELDAELGQLQEDEAALTLTLEEQRARWNVAMETLETTAQAREVASEQRGRQREQRDQLTQQHGPLKAQQQTLALEXXXXXXXXXXXXXXXXXXSDXXXXXXXXXXXXEASRETLLEPDELAGEELEELLHQREQQERRLTETRQQAQSLAEQLRNDELARXXXXXXXXXXXXXLQQRRMDVQALALKAATQDEQL 925
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BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: A0A060BCZ0_9GAMM (Chromosome partition protein Smc n=7 Tax=Halomonas TaxID=2745 RepID=A0A060BCZ0_9GAMM)

HSP 1 Score: 261 bits (667), Expect = 1.430e-75
Identity = 232/326 (71.17%), Postives = 251/326 (76.99%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQSREQLQQRRMEVQALALKAATQDEQL 978
            EWLASIH+  T ++AE  + +LAPGESVVSR+GVWRGRGWLHQQANGEG+D LL+TRRR+ EL A+  Q E+ALAL  EQCEA +E IE LEQ+RE Q+EQERAHA +LQQLAVKE  XXXXXXXXXXXXXXXXXXXXXXXXX          QRARWH +M       XXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXXXXX     SRSSD EERL+LRIAELEESREML+EPDELA EELEELLHQREQQE RLN TRQQAQALAEQLR DELA              LQQRRM+VQALALKAATQDEQL
Sbjct:  599 EWLASIHFAETNEDAETLLGNLAPGESVVSREGVWRGRGWLHQQANGEGVDALLVTRRRFDELDARLTQDEDALALLNEQCEAASEAIEVLEQTREQQAEQERAHAASLQQLAVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRARWHAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPMKARQQALALXXXXXXXXXXXXXXXXSRSSDSEERLSLRIAELEESREMLVEPDELAAEELEELLHQREQQERRLNDTRQQAQALAEQLRNDELAXXXXXXXXXXXXXXLQQRRMDVQALALKAATQDEQL 924
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: A0A455U696_9GAMM (Uncharacterized protein n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A455U696_9GAMM)

HSP 1 Score: 244 bits (622), Expect = 6.340e-75
Identity = 212/253 (83.79%), Postives = 228/253 (90.12%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAG 759
            EWLASIHYT T  EAE QVAHLAPGESVVS++GVW GRGWL QQANGEGIDGLLLTRRRYAELTA+RE+ EEALALAEEQC+  +E IE LEQ RE Q+EQERAHA +LQQLAVKER XXXXXXXXXXXXXXXXXXXXXXXX EAEL LTLDEQRARWH++MEQLES+A    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  S Q+RSSD+EERL+ RIAELEE+REML+EPDELAG
Sbjct:  106 EWLASIHYTQTTAEAEAQVAHLAPGESVVSQEGVWLGRGWLQQQANGEGIDGLLLTRRRYAELTAQREREEEALALAEEQCDVASEAIETLEQEREQQAEQERAHAASLQQLAVKERXXXXXXXXXXXXXXXXXXXXXXXXXDEAELALTLDEQRARWHLAMEQLESAAQAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQQARSSDVEERLS-RIAELEEAREMLVEPDELAG 357
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: H0IZG7_9GAMM (Chromosome partition protein Smc n=1 Tax=Halomonas sp. GFAJ-1 TaxID=1118153 RepID=H0IZG7_9GAMM)

HSP 1 Score: 254 bits (650), Expect = 3.230e-73
Identity = 228/326 (69.94%), Postives = 252/326 (77.30%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQSREQLQQRRMEVQALALKAATQDEQL 978
            EWLA IHY  T+ +AE  +A LAPGESVVSRDGVWRGRGWLHQQANGEG+D LL+TRRRY EL A+REQ E+ALAL + QC+A ++TIEALE +RE Q+ +ERAHA TLQQLAV+E  XXXXXXXXXXXXXXXXXXXXXXXXX    TLTL+EQRARWH +MEQLE++ XXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXX    Q+RSSD EERL LRIAELEE+REML+EP ELA EELEELL+QREQQE RLN TRQ+AQ                          LQQRRMEVQAL LKAATQDEQL
Sbjct:  599 EWLARIHYAETSQDAEALLATLAPGESVVSRDGVWRGRGWLHQQANGEGVDALLVTRRRYDELAARREQDEKALALLDAQCDAASDTIEALEHTREQQASEERAHAATLQQLAVQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLTLEEQRARWHSAMEQLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXPLKARQQSLALXXXXXXXXXXXXXXQQARSSDSEERLALRIAELEEAREMLVEPVELAAEELEELLYQREQQERRLNETRQKAQXXXXXXXXXXXXXXXXXXXXXXXXXXLQQRRMEVQALVLKAATQDEQL 924
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Match: A0A6M1SK72_HALSX (Chromosome partition protein Smc n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A6M1SK72_HALSX)

HSP 1 Score: 242 bits (618), Expect = 8.230e-69
Identity = 233/326 (71.47%), Postives = 254/326 (77.91%), Query Frame = 1 
Query:    1 EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGIDGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSEQERAHATTLQQLAVKERSXXXXXXXXXXXXXXXXXXXXXXXXXEAELTLTLDEQRARWHVSMEQLESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSHQSRSSDIEERLTLRIAELEESREMLLEPDELAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQSREQLQQRRMEVQALALKAATQDEQL 978
            EWLASIH+ ++AD+ E  +  LA GESVVSRDGVWRGRGWLHQQANGEG+D LL+TRRR+ EL  +R Q EEALAL + QC+  +E ++ALE+ RE Q+                   XXXXXXXXXXXXXXXXXXXXXXXXX    TLTL+EQRARWH +MEQLE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +RSSD E RLTLRIAELEESREML+EPDELA EELEELLHQREQQE RLN TRQQAQALAEQLR DELAR             LQQRRM+VQ LALKAATQDEQL
Sbjct:  601 EWLASIHFVDSADDIEALLPSLAKGESVVSRDGVWRGRGWLHQQANGEGVDALLVTRRRFTELAEQRAQAEEALALLDAQCDTASEALDALEEQREQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLTLEEQRARWHTAMEQLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSSDSEARLTLRIAELEESREMLVEPDELASEELEELLHQREQQERRLNETRQQAQALAEQLRNDELARXXXXXXXXXXXXXLQQRRMDVQTLALKAATQDEQL 926
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15343.3097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D5M7A7_9GAMM9.160e-11084.66Chromosome partition protein Smc n=39 Tax=root Tax... [more]
A0A0P7Y2E7_9GAMM7.730e-9874.23Chromosome partition protein Smc n=9 Tax=Halomonas... [more]
A0A1U9RC43_9GAMM7.110e-8969.33Chromosome partition protein Smc n=13 Tax=Halomona... [more]
A0A2D6PK56_HALSX6.190e-8376.99Chromosome segregation protein SMC (Fragment) n=1 ... [more]
A0A0D7UZ10_9GAMM3.940e-8176.99Chromosome partition protein Smc n=38 Tax=Halomona... [more]
A0A1R4HY93_9GAMM6.270e-7857.06Chromosome partition protein Smc n=12 Tax=Halomona... [more]
A0A060BCZ0_9GAMM1.430e-7571.17Chromosome partition protein Smc n=7 Tax=Halomonas... [more]
A0A455U696_9GAMM6.340e-7583.79Uncharacterized protein n=1 Tax=Halomonas sulfidae... [more]
H0IZG7_9GAMM3.230e-7369.94Chromosome partition protein Smc n=1 Tax=Halomonas... [more]
A0A6M1SK72_HALSX8.230e-6971.47Chromosome partition protein Smc n=1 Tax=Halomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15343contigE-siliculosus-1a_F_contig15343:3..980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size978
Model size978
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.D
EggNOG OGs1MUAQ@1224,1RNA6@1236,1XH98@135619,COG1196@1,COG1196@2
EggNOG free text desc.Required for chromosome condensation and partitioning
KEGG koko:K03529
Preferred namesmc
Seed eggNOG ortholog1380358.JADJ01000007_gene3078
Seed ortholog evalue7.1e-101
Seed ortholog score374.0
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.640805-CDS-E-siliculosus-1a_F_contig15343:2..9801622928043.640805-CDS-E-siliculosus-1a_F_contig15343:2..980Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15343 3..980 -
1696318785.3370094-CDS-E-siliculosus-1a_F_contig15343:2..9801696318785.3370094-CDS-E-siliculosus-1a_F_contig15343:2..980Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15343 3..980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15343.3097.1prot_E-siliculosus-1a_F_contig15343.3097.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15343 3..980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15343.3097.1

>prot_E-siliculosus-1a_F_contig15343.3097.1 ID=prot_E-siliculosus-1a_F_contig15343.3097.1|Name=mRNA_E-siliculosus-1a_F_contig15343.3097.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=326bp
EWLASIHYTNTADEAEQQVAHLAPGESVVSRDGVWRGRGWLHQQANGEGI
DGLLLTRRRYAELTAKREQLEEALALAEEQCEAINETIEALEQSREHQSE
QERAHATTLQQLAVKERSLAQRLEHLEGRATELDEELAQLQEDEAELTLT
LDEQRARWHVSMEQLESSAEARETSAEQRNRQREQRDQLNQQHAPLKAQQ
QALALERERLSAERDSLRSHQSRSSDIEERLTLRIAELEESREMLLEPDE
LAGEELEELLHQREQQEGRLNATRQQAQALAEQLRTDELARQQHERNLEQ
SREQLQQRRMEVQALALKAATQDEQL
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mRNA from alignment at E-siliculosus-1a_F_contig15343:3..980-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15343.3097.1 ID=mRNA_E-siliculosus-1a_F_contig15343.3097.1|Name=mRNA_E-siliculosus-1a_F_contig15343.3097.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=978bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15343:3..980- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAATGGTTAGCAAGTATTCACTATACGAACACCGCTGACGAGGCCGAGCA
GCAGGTGGCTCACTTAGCGCCCGGTGAAAGCGTGGTGAGTCGCGACGGTG
TTTGGCGCGGCCGTGGCTGGTTGCATCAGCAGGCCAATGGCGAAGGTATT
GATGGATTGCTGCTAACCCGCCGCCGCTATGCCGAGCTCACCGCCAAGCG
TGAGCAACTAGAAGAAGCACTAGCGCTGGCAGAAGAGCAGTGTGAAGCGA
TTAACGAAACGATTGAAGCGCTGGAACAATCCCGCGAGCATCAGTCTGAA
CAGGAGCGTGCCCACGCCACTACGCTTCAGCAGTTAGCAGTTAAAGAACG
GAGCTTGGCCCAGCGCTTAGAACACTTAGAGGGCCGTGCCACTGAGCTCG
ATGAAGAGCTCGCCCAGTTGCAGGAAGATGAAGCGGAGTTAACACTCACT
TTAGACGAGCAGCGCGCCCGCTGGCATGTGTCTATGGAGCAACTGGAAAG
TAGTGCCGAAGCACGAGAAACCAGCGCTGAGCAGCGCAACCGTCAGCGCG
AACAGCGAGACCAGCTTAATCAGCAGCATGCACCGCTCAAAGCGCAGCAG
CAGGCGTTAGCGCTAGAGCGTGAGCGTTTAAGTGCTGAGCGCGATAGCCT
CCGTTCTCACCAGTCGCGCAGTAGCGATATTGAAGAGCGGTTAACGTTGC
GCATTGCTGAGTTGGAAGAGTCGCGGGAAATGTTGCTTGAGCCCGACGAG
CTGGCAGGAGAAGAGCTTGAAGAACTGCTTCATCAGCGTGAGCAGCAAGA
GGGGCGCTTAAATGCTACTCGGCAGCAGGCTCAGGCACTCGCGGAGCAGT
TACGCACTGATGAGCTTGCCCGTCAGCAGCACGAACGTAATCTGGAGCAG
AGCCGTGAGCAGCTCCAGCAGCGGCGTATGGAAGTGCAGGCGCTGGCGTT
AAAAGCGGCTACTCAGGATGAGCAATTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15343:3..980-

>mRNA_E-siliculosus-1a_F_contig15343.3097.1 ID=mRNA_E-siliculosus-1a_F_contig15343.3097.1|Name=mRNA_E-siliculosus-1a_F_contig15343.3097.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1956bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15343:3..980- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAATGGTTAGCAAGTATTCACTATACGAACACCGCTGACGAGGCCGAGCA
GCAGGTGGCTCACTTAGCGCCCGGTGAAAGCGTGGTGAGTCGCGACGGTG
TTTGGCGCGGCCGTGGCTGGTTGCATCAGCAGGCCAATGGCGAAGGTATT
GATGGATTGCTGCTAACCCGCCGCCGCTATGCCGAGCTCACCGCCAAGCG
TGAGCAACTAGAAGAAGCACTAGCGCTGGCAGAAGAGCAGTGTGAAGCGA
TTAACGAAACGATTGAAGCGCTGGAACAATCCCGCGAGCATCAGTCTGAA
CAGGAGCGTGCCCACGCCACTACGCTTCAGCAGTTAGCAGTTAAAGAACG
GAGCTTGGCCCAGCGCTTAGAACACTTAGAGGGCCGTGCCACTGAGCTCG
ATGAAGAGCTCGCCCAGTTGCAGGAAGATGAAGCGGAGTTAACACTCACT
TTAGACGAGCAGCGCGCCCGCTGGCATGTGTCTATGGAGCAACTGGAAAG
TAGTGCCGAAGCACGAGAAACCAGCGCTGAGCAGCGCAACCGTCAGCGCG
AACAGCGAGACCAGCTTAATCAGCAGCATGCACCGCTCAAAGCGCAGCAG
CAGGCGTTAGCGCTAGAGCGTGAGCGTTTAAGTGCTGAGCGCGATAGCCT
CCGTTCTCACCAGTCGCGCAGTAGCGATATTGAAGAGCGGTTAACGTTGC
GCATTGCTGAGTTGGAAGAGTCGCGGGAAATGTTGCTTGAGCCCGACGAG
CTGGCAGGAGAAGAGCTTGAAGAACTGCTTCATCAGCGTGAGCAGCAAGA
GGGGCGCTTAAATGCTACTCGGCAGCAGGCTCAGGCACTCGCGGAGCAGT
TACGCACTGATGAGCTTGCCCGTCAGCAGCACGAACGTAATCTGGAGCAG
AGCCGTGAGCAGCTCCAGCAGCGGCGTATGGAAGTGCAGGCGCTGGCGTT
AAAAGCGGCTACTCAGGATGAGCAATTAGAATGGTTAGCAAGTATTCACT
ATACGAACACCGCTGACGAGGCCGAGCAGCAGGTGGCTCACTTAGCGCCC
GGTGAAAGCGTGGTGAGTCGCGACGGTGTTTGGCGCGGCCGTGGCTGGTT
GCATCAGCAGGCCAATGGCGAAGGTATTGATGGATTGCTGCTAACCCGCC
GCCGCTATGCCGAGCTCACCGCCAAGCGTGAGCAACTAGAAGAAGCACTA
GCGCTGGCAGAAGAGCAGTGTGAAGCGATTAACGAAACGATTGAAGCGCT
GGAACAATCCCGCGAGCATCAGTCTGAACAGGAGCGTGCCCACGCCACTA
CGCTTCAGCAGTTAGCAGTTAAAGAACGGAGCTTGGCCCAGCGCTTAGAA
CACTTAGAGGGCCGTGCCACTGAGCTCGATGAAGAGCTCGCCCAGTTGCA
GGAAGATGAAGCGGAGTTAACACTCACTTTAGACGAGCAGCGCGCCCGCT
GGCATGTGTCTATGGAGCAACTGGAAAGTAGTGCCGAAGCACGAGAAACC
AGCGCTGAGCAGCGCAACCGTCAGCGCGAACAGCGAGACCAGCTTAATCA
GCAGCATGCACCGCTCAAAGCGCAGCAGCAGGCGTTAGCGCTAGAGCGTG
AGCGTTTAAGTGCTGAGCGCGATAGCCTCCGTTCTCACCAGTCGCGCAGT
AGCGATATTGAAGAGCGGTTAACGTTGCGCATTGCTGAGTTGGAAGAGTC
GCGGGAAATGTTGCTTGAGCCCGACGAGCTGGCAGGAGAAGAGCTTGAAG
AACTGCTTCATCAGCGTGAGCAGCAAGAGGGGCGCTTAAATGCTACTCGG
CAGCAGGCTCAGGCACTCGCGGAGCAGTTACGCACTGATGAGCTTGCCCG
TCAGCAGCACGAACGTAATCTGGAGCAGAGCCGTGAGCAGCTCCAGCAGC
GGCGTATGGAAGTGCAGGCGCTGGCGTTAAAAGCGGCTACTCAGGATGAG
CAATTA
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