mRNA_E-siliculosus-1a_F_contig1532.3085.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1532.3085.1
Unique NamemRNA_E-siliculosus-1a_F_contig1532.3085.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: D8LH69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH69_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 3.130e-124
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK
Sbjct:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 235          
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: A0A836C8J3_9STRA (Pre-mRNA-splicing factor Cwf15/Cwc15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J3_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.540e-44
Identity = 140/239 (58.58%), Postives = 164/239 (68.62%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEK----PATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW PA   ++  GNW+TGG + Q  SA D P    LKFR+ GQNSEAEL++RD++  +E  E  A +EK    PA +   + +   G                            XXXXXXXXXXXXXXXXXXXXX AL+KELEKIR+   XXXXXXXXXXXXXXXX  QEAAM+GN+LL+ + S+SQVKRRWNDDVVFKGQARTEP+ KKRFVNDTIR+DFHR FL KY+K
Sbjct:    1 MTTAHRPTWTPAVGTSNARGNWATGGLSWQ-FSAKDEPGHKKLKFRQLGQNSEAELKRRDLKTVLEAKEENAKEEKRTGRPAAV---HGDAKGGDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALQKELEKIRRXXXXXXXXXXXXXXXXXXXXXQEAAMSGNVLLSMAQSTSQVKRRWNDDVVFKGQARTEPQVKKRFVNDTIRSDFHRSFLKKYVK 235          
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: A0A7S2FJV3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJV3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.340e-40
Identity = 127/245 (51.84%), Postives = 151/245 (61.63%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDE--------GGAGRGRDRLQLLLKEQGDVNLDDV-KKYDDEDXXXXXXXXXXXXXXXXXXXXXXAL-EKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW   +  ASD GNWS GG+ S   S  D+P  T LK R+  Q  +        R E+E +E +ALDEK     R   E        GGA        L+LK + +V+ + + +KYDD DXXXXXXXXXXXXXXXXXXXXXX L ++ELEKI+ ERE                   +AA+ GN L+  +  SSQVKR+WNDDVVFK QARTEPE KKRFVNDTIRNDFHRRFL K+ K
Sbjct:    1 MTTAHRPTWVAGKGEASDYGNWSLGGKVSGQFSVKDMPGHTKLKMRQGEQIPDFV-----TRDELESAEDKALDEKLKAKKRSALEDSSSSTVLGGA------KPLMLKAE-EVDTERINRKYDDGDXXXXXXXXXXXXXXXXXXXXXXELLQRELEKIKAEREKVRLEKEAEEAAIAEKTASDAALLGNPLMLGATKSSQVKRKWNDDVVFKNQARTEPEAKKRFVNDTIRNDFHRRFLAKFAK 233          
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: A0A8K1CHA0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHA0_PYTOL)

HSP 1 Score: 145 bits (365), Expect = 2.570e-39
Identity = 129/242 (53.31%), Postives = 156/242 (64.46%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVK----KYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSS---QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW  A     + G W +GGQ SQ  SA DLP  T LK R+ GQ +  E+  RD+RAE+E  E++  +EK  +     D+        +L LL   + D     +K    KYDD D  XXXXXXXXXXXXXXXXXXX  L +ELEKI+KE  XXXXXXXXXX        +E  + GN L TQ+ S+S   ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct:    1 MTTAHRPTW-HAAVGQKNEGGWQSGGQVSQQFSARDLPGHTKLKIRQVGQGTANEIELRDLRAELEGREQQYEEEKGKSNNTAQDKLRRLEENKKLLLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXAELMRELEKIKKEXXXXXXXXXXXXREAAEKMAREEILQGNPL-TQAASASGTAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYVQ 240          
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: A0A2D4BX11_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX11_PYTIN)

HSP 1 Score: 141 bits (355), Expect = 8.240e-38
Identity = 136/248 (54.84%), Postives = 162/248 (65.32%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATI------ARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVK----KYDDEDXXXXXXXXXXXXXXXXXXXXXXA-LEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSS--QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW  A    S+ G W TGGQ SQ  SA DLP  T LK R+ GQ +  E+  RD+RAE+E  E++  +EK           RR +E        ++ LL   + D     +K    KYDD D  XXXXXXXXXXXXXXXXXXX A L +ELEKI+KE  XXXXXXXXXXXXXXXX  +E  + GN L     +S+  ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct:    1 MTTAHRPTWHAAVGQKSE-GGWQTGGQVSQQFSARDLPGHTKLKLRQVGQGTANEVEARDLRAELEGREQQYEEEKSKNSDSVQARLRRLEENK------KILLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXEAELMRELEKIKKEXXXXXXXXXXXXXXXXXXXXREEILQGNPLTAAQTASANAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLNKYVQ 241          
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: K3WMS3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMS3_GLOUD)

HSP 1 Score: 139 bits (349), Expect = 6.140e-37
Identity = 120/240 (50.00%), Postives = 149/240 (62.08%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVK----KYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNS-SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW  A   A++ G W  GG  S+  SA DLP+   LK+R+ GQ +  E+   D+RAE+E  E +  +EK        D+        +L LL   + D     +K    KYDD D         XXXXXXXXXXXXX L +ELEKI++   XXXXXXXXXXXX      +   + GN LL QS+  S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL+KYI+
Sbjct:    1 MTTAHRPTWHAAVGQANE-GGWQAGGALSEQFSARDLPAHKKLKYRQVGQGTANEVELLDLRAELEGKEEKYEEEKGKKKDTALDKLRRLEENKKLLLLGDSEADARESQLKSIASKYDDADEIGDSDDSSXXXXXXXXXXXXXXLMRELEKIKRXXXXXXXXXXXXXXXASEQESRVEILQGNPLLQQSSGGSAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLSKYIQ 239          
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: D0NV69_PHYIT (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=D0NV69_PHYIT)

HSP 1 Score: 137 bits (344), Expect = 3.420e-36
Identity = 110/239 (46.03%), Postives = 137/239 (57.32%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVK----KYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNS-SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYI 702
            MTTAHRPTW  A    S+ G W  GG+ S  VSA DLP+   LK R+ GQ +  E+   D+R E+E  E +   EK        D+        ++ LL   + D     +K    KY+D D       XXXXXXXXXXXXXXX L +ELEKI++ERE                + +E  + GN L  Q  + S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI
Sbjct:    1 MTTAHRPTW-HAAVGQSNEGGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEVEKGRKKDTAQDKLRRLEENKKILLLGDAEADAKESQLKEVASKYNDADDGAGSEAXXXXXXXXXXXXXXXELMRELEKIKQEREEERLRKEEEARKTVELQSREEILQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYI 238          
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: A0A485KPE0_9STRA (Aste57867_10048 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPE0_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.960e-35
Identity = 117/243 (48.15%), Postives = 147/243 (60.49%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLK--EQGDVNLDDVKKYDD-EDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQS-----NSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTA RPTW  A     + G W+ GGQ S   SA DLP QT LK R+ GQ +  EL  +D++ E+ + ER+  +EK   +     +    R ++   LLLK  E  D   D V KYDD +D      XXXXXXXXXXXXXXXX L +ELEKI+KE  XXX X           +++E  + GN L +       + S+ +KR+WNDDVVFK Q+R EPETKKRF+NDTIRNDFHRRFL  YI+
Sbjct:    1 MTTAARPTW-HAAVGQKNEGGWNAGGQVSMQFSARDLPGQTKLKTRQIGQGTVDELGMKDLKGELSERERKYEEEKGKEVDTAQQK--MLRLKENKMLLLKGDEWEDRAKDVVAKYDDADDDTRQDSXXXXXXXXXXXXXXXXXLMRELEKIKKEXXXXXLXKEMVDREVEENQRKEEILLGNPLTSAQARNIPSGSATIKRKWNDDVVFKNQSRNEPETKKRFINDTIRNDFHRRFLKTYIQ 240          
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: A0A067BVG0_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BVG0_SAPPC)

HSP 1 Score: 134 bits (338), Expect = 2.480e-35
Identity = 113/239 (47.28%), Postives = 143/239 (59.83%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLK--EQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSN--SSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTA RPT+  A    ++ G W++GGQ S   SA DLP  T LK R+ GQ +  EL +RD+  E+ D ER+  ++K   +   + +    R +D   LLLK  E  D   D   KYDD D     XXXXXXXXXXXXXXX   L +ELEKI++ERE         XX     R ++  + GN L +      S+ +KR+WNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL  YI+
Sbjct:    1 MTTAARPTFNAAMGKKNE-GGWNSGGQISMQFSARDLPGHTKLKTRQLGQGTSDELAERDLIGELTDRERKYEEDKLKEVD--FAQQKIMRLKDNKTLLLKGDEWEDRAKDVQTKYDDADDDVGDXXXXXXXXXXXXXXXEAELMRELEKIKREREEERLRKEQAXXDEEEKRAKDEVLMGNPLTSAMAPAGSATIKRKWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLKAYIQ 236          
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Match: A0A3F2RN91_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RN91_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.790e-35
Identity = 126/253 (49.80%), Postives = 150/253 (59.29%), Query Frame = 1
Query:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRD----RLQLLLKEQ-----GDVNLDD--------VKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNS-SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW  A   A++ G W  GGQ S  VSA DLP    LK R+ GQ +  E+   D+R E+E  E     EK             GR +D    +L+ L K +     GDV  D           KYDD D       XXXXXXXXXXXXXX  L +ELEKI++E  XXXXXXXXXXXX    + +E  + GN L  Q  + S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI+
Sbjct:    1 MTTAHRPTWHAAVGQANE-GGWQAGGQLSDQVSARDLPGHKHLKMRQVGQGTANEVELLDLRTELERKEETYEVEK-------------GRKKDTALEKLRRLEKNKKILLLGDVETDARESQLKNVASKYDDADDGGDSDGXXXXXXXXXXXXXXAELMRELEKIKQEXXXXXXXXXXXXXXVAEQQSREEVLQGNPLTQQQTAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYIQ 239          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1532.3085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH69_ECTSI3.130e-124100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8J3_9STRA2.540e-4458.58Pre-mRNA-splicing factor Cwf15/Cwc15 n=1 Tax=Tribo... [more]
A0A7S2FJV3_9STRA5.340e-4051.84Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1CHA0_PYTOL2.570e-3953.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BX11_PYTIN8.240e-3854.84Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WMS3_GLOUD6.140e-3750.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NV69_PHYIT3.420e-3646.03Uncharacterized protein n=23 Tax=Peronosporaceae T... [more]
A0A485KPE0_9STRA1.960e-3548.15Aste57867_10048 protein n=1 Tax=Aphanomyces stella... [more]
A0A067BVG0_SAPPC2.480e-3547.28Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A3F2RN91_9STRA3.790e-3549.80Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1532contigE-siliculosus-1a_F_contig1532:2642..5660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size708
Model size708
Exons6
Ec32 orthologEc-24_000770.1
Ec32 ortholog descriptionPre-mRNA-splicing factor Cwf15/Cwc15
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko03000,ko03021,ko03041
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EggNOG OGsKOG3228@1,KOG3228@2759
EggNOG free text desc.mRNA splicing, via spliceosome
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
KEGG ModuleM00353,M00355
KEGG Pathwayko03040,map03040
KEGG koko:K09191,ko:K12863
Preferred nameCWC15
Seed eggNOG ortholog2880.D8LH69
Seed ortholog evalue6.2e-99
Seed ortholog score367.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1532.3085.1prot_E-siliculosus-1a_F_contig1532.3085.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1532 2642..5660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.043001-CDS-E-siliculosus-1a_F_contig1532:2641..27651622928042.043001-CDS-E-siliculosus-1a_F_contig1532:2641..2765Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 2642..2765 -
1696318784.6268032-CDS-E-siliculosus-1a_F_contig1532:2641..27651696318784.6268032-CDS-E-siliculosus-1a_F_contig1532:2641..2765Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 2642..2765 -
1622928042.064539-CDS-E-siliculosus-1a_F_contig1532:2977..30421622928042.064539-CDS-E-siliculosus-1a_F_contig1532:2977..3042Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 2978..3042 -
1696318784.6478064-CDS-E-siliculosus-1a_F_contig1532:2977..30421696318784.6478064-CDS-E-siliculosus-1a_F_contig1532:2977..3042Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 2978..3042 -
1622928042.0814555-CDS-E-siliculosus-1a_F_contig1532:3949..39881622928042.0814555-CDS-E-siliculosus-1a_F_contig1532:3949..3988Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 3950..3988 -
1696318784.6606412-CDS-E-siliculosus-1a_F_contig1532:3949..39881696318784.6606412-CDS-E-siliculosus-1a_F_contig1532:3949..3988Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 3950..3988 -
1622928042.095631-CDS-E-siliculosus-1a_F_contig1532:4452..46791622928042.095631-CDS-E-siliculosus-1a_F_contig1532:4452..4679Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 4453..4679 -
1696318784.6705012-CDS-E-siliculosus-1a_F_contig1532:4452..46791696318784.6705012-CDS-E-siliculosus-1a_F_contig1532:4452..4679Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 4453..4679 -
1622928042.1058714-CDS-E-siliculosus-1a_F_contig1532:5239..54161622928042.1058714-CDS-E-siliculosus-1a_F_contig1532:5239..5416Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 5240..5416 -
1696318784.681739-CDS-E-siliculosus-1a_F_contig1532:5239..54161696318784.681739-CDS-E-siliculosus-1a_F_contig1532:5239..5416Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 5240..5416 -
1622928042.1172805-CDS-E-siliculosus-1a_F_contig1532:5584..56601622928042.1172805-CDS-E-siliculosus-1a_F_contig1532:5584..5660Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 5585..5660 -
1696318784.6938088-CDS-E-siliculosus-1a_F_contig1532:5584..56601696318784.6938088-CDS-E-siliculosus-1a_F_contig1532:5584..5660Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1532 5585..5660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1532.3085.1

>prot_E-siliculosus-1a_F_contig1532.3085.1 ID=prot_E-siliculosus-1a_F_contig1532.3085.1|Name=mRNA_E-siliculosus-1a_F_contig1532.3085.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=236bp
MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQ
NSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLL
KEQGDVNLDDVKKYDDEDDADSGDDLDSSDSDDDSDDDEEALEKELEKIR
KEREEARKKKEREEAEDEEKRKQEAAMTGNILLTQSNSSSQVKRRWNDDV
VFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK*
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mRNA from alignment at E-siliculosus-1a_F_contig1532:2642..5660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1532.3085.1 ID=mRNA_E-siliculosus-1a_F_contig1532.3085.1|Name=mRNA_E-siliculosus-1a_F_contig1532.3085.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3019bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1532:2642..5660- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAACAGCCCACAGGCCCACGTGGGCTCCGGCCCAAGCTGCTGCTTC CGATGTCGGAAACTGGTCCACTGGGGGTAAGATACTTGCTGTGGCTCCCT GTTCATTGTTCAGCAAAGTACGTTCATAGCAGCAGCATCATGGTCTCCGC TTCACCCCCCTGCCTTGTGGAGGAGACACAATTCAGATGTGACTAAATAA CGCTCTTCCCTCACTGTCCCTCACCTTACCTATTCATTTTTCAGGGCAAG CAAGTCAGGCTGTTTCTGCGCACGATTTGCCAAGCCAGACTACTTTAAAA TTCAGGAAGACAGGCCAAAACAGCGAGGCTGAACTTCGAAAGCGGGATGT CCGCGCCGAGGTCGAAGACAGCGAACGCCGAGCACTGGACGAGAAACCTG CTACAATCGCTCGACGCTACGGTAGGAGATAGGAGAACGAACGATATCTT GTCGTTTACATTGCGAAACTGACGGGCCTCGTGTTTGTGTGTGACGAGAT ATTTACGAGCGAGAGAGTTATTTCCAGTATTTCGTATTAAAACACATGCA TACTTGTACCTCCCGGAGTAGTCTAGGAATATAGTTTAGACTACAACCTA CGAAGTAAAAGGTAGTGGTACTGCTGTAGTTCAGATGCGCTAGCCATATT TCGCACAAAAGTCGAGGTACTGCTGTAGGTCGTGTCATCGTGTGCCTCTT GTTGTCAGTATTTGGACGTCTGGACGTTGGATCTCATGAATGTCGCGAGT GTGACATGTGTGTGATCGTTCGATCCTGCAGTACTCAATTTCAAGATAAA GCAGTCACACGGACGGTGGCATGGTTTGTCTTTCGGGAGTTTGATACTTC GTACTTGACAGCACTGACTGCTCTTGGTGCCGTACGCCCGCGAAATCGCT CCCGCTACAAGCGTGAGGGAGCGGCGATCTAAACGCGTCTCTTTGCCGCC TGCCTCAACAACCAACAAATAAATGTGTAAGACGAGGGAGGGGCCGGTCG AGGTAGGGATCGTCTACAGCTCCTGTTGAAAGAGCAGGGCGACGTGAATT TGGACGACGTGAAGAAGTACGACGACGAAGACGATGCTGACAGCGGTGAT GATCTTGACAGCAGCGACTCGGACGACGACTCAGACGATGACGAAGAAGC GCTGGAGAAGGAGCTGGAGAAGATCAGGAAGGAGCGCGAAGAAGCTCGCA AAAAGAAGGTGCGCTGTGATTTAGCGGTGGTACTGACTAGTGCACAGCGG TAACGCAGCCGATCTCATGACTAGATTGGATTGGTTGCCGTCCTTCACCC GCTTCACCCGAAATGTGCAACGATTTCCCCGGCCTGATACCCGCTGGTTG TTTTTGGAGCCGTTGTAGGGCACCCAATCAATGCGCTGCACATATGCATA TGAGGGCGGTACTACCGTAGGTTGATATATGTGTCGCGCGATGGTGTCAC GATGGTGTCAGGATTGATTCACTCTGCGAAGGTCTTGTTGACAAATTCGA TTGGTCTCAAAGATAGCATACAAATGATAAGTGCACTTTTAGATTATAGC TTTGGCCCGAACGCTCAATTGTTGTCAGCGAGTTTATGGTAGCTCGACCT ACAGTAGTTTGAAATGACATTTTATTAACGATATTTGCCACACCATCTTG TCCTCGGGGGCCCCCATGACAGGAGCGCGAAGAAGCTGAAGATGAAGAAA AAAGGAAGCAGGTAAGGATATACTAGGCTCCGATTGAGATGTTCGTCTCT GTCGCAGGTTTGAACCGATCACACCGCTTTGTATGTGAGCACGAGGTGCG AGAACATTTAAATAGTTTGCAAACTTTTCTCTCAAACTTTTCTCATGTAA CGTCTTCATAGGAGCAAAAAGATGCGCCAAACGTTTGGAAAACTTAAGCT TTTGACGATAATCGCGCGATTGGAGCACAAGTGTGCAAACTTTCTCGCGA TATAGTTGTCGAACAAAAGTGTCGCGGCGAGCTTTCGCCAATCCACGTCA AGCTATCCCGTTACCACACGTAGACCCTCTCCCACCACACAGACTCGCAC GATCCGCGCGATCGATGAATGGCCAAGTCAGAATACTTGAACGGCGAATT GGAAATGCCTGCGATGGCCGCAGCTGTGTAGAATACGTAGACAACGTAGA TTTGTAGAGTCTCAACAACTTGGATTGGACGTATGATTGAGGTCTTCCTG GCTGCGATTGGAAGGCACAGCGCCAGGTTTTATGCCACCAACTCGTTTTC CAAGCTTTTGTTGCATGCTCTGGCCGGTTTCGCGATGTGGTGTGAACGGG TGTGCCTGTTTCTCGCCGTTGCTGAATAGCAATAAATGGCTACGCCTCCG CATTCCACCAGTCCCGTGAAGAAAACTTCTTTCACCCCATGTGAGCGTCC AATAAAATTTGAAAGTGTTTTTAACAAAGAGTTTCCAACAAGAAATTGCC GCAAAAGCTTGAACTTATCTCCCAACTTTATGCTCCCGTCAAGGGTGGTG TCATTGGAGCATGATTTTGTTTGGATGCGAATGGAGGTAACAATAGACAT ACCAGCCCTTAAGCTATTTTGCCTGTTGAAAGCTCACAAGTAATATTCTG TACTCCACGGTCATGCAGGAAGCAGCCATGACGGGGAACATTCTACTCAC TCAGAGCAACAGCAGTTCGCAGGTCAAGCGAAGGTGAGCCCGTCCGTGGT GTAGACTCAAGAGATTGGTTCAAAGGTGGCAATTTCACGATGCTCGTCCT GGCAACATAGGAAGGACAACTGTATACCCCATCGGGAAGCCAGTATGTGC ATGCATAAATAGGTGTAGTTAGAACAATTGTGAGGATCAACGAAAGGCAC AATAATTGTGACGATTTTCCACCCCGCGTCTCTTGATGTCAACAGATGGA ACGACGACGTGGTCTTCAAAGGGCAAGCAAGGACCGAGCCAGAGACAAAG AAGAGATTTGTGAACGACACCATCCGTAATGATTTCCACCGCCGCTTCCT CACGAAGTATATCAAATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1532:2642..5660-

>mRNA_E-siliculosus-1a_F_contig1532.3085.1 ID=mRNA_E-siliculosus-1a_F_contig1532.3085.1|Name=mRNA_E-siliculosus-1a_F_contig1532.3085.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1416bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1532:2642..5660- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAACAGCCCACAGGCCCACGTGGGCTCCGGCCCAAGCTGCTGCTTC
CGATGTCGGAAACTGGTCCACTGGGGATGACAACAGCCCACAGGCCCACG
TGGGCTCCGGCCCAAGCTGCTGCTTCCGATGTCGGAAACTGGTCCACTGG
GGGGCAAGCAAGTCAGGCTGTTTCTGCGCACGATTTGCCAAGCCAGACTA
CTTTAAAATTCAGGAAGACAGGCCAAAACAGCGAGGCTGAACTTCGAAAG
CGGGATGTCCGCGCCGAGGTCGAAGACAGCGAACGCCGAGCACTGGACGA
GAAACCTGCTACAATCGCTCGACGCTACGGGCAAGCAAGTCAGGCTGTTT
CTGCGCACGATTTGCCAAGCCAGACTACTTTAAAATTCAGGAAGACAGGC
CAAAACAGCGAGGCTGAACTTCGAAAGCGGGATGTCCGCGCCGAGGTCGA
AGACAGCGAACGCCGAGCACTGGACGAGAAACCTGCTACAATCGCTCGAC
GCTACGACGAGGGAGGGGCCGGTCGAGGTAGGGATCGTCTACAGCTCCTG
TTGAAAGAGCAGGGCGACGTGAATTTGGACGACGTGAAGAAGTACGACGA
CGAAGACGATGCTGACAGCGGTGATGATCTTGACAGCAGCGACTCGGACG
ACGACTCAGACGATGACGAAGAAGCGCTGGAGAAGGAGCTGGAGAAGATC
AGGAAGGAGCGCGAAGAAGCTCGCAAAAAGAAGACGAGGGAGGGGCCGGT
CGAGGTAGGGATCGTCTACAGCTCCTGTTGAAAGAGCAGGGCGACGTGAA
TTTGGACGACGTGAAGAAGTACGACGACGAAGACGATGCTGACAGCGGTG
ATGATCTTGACAGCAGCGACTCGGACGACGACTCAGACGATGACGAAGAA
GCGCTGGAGAAGGAGCTGGAGAAGATCAGGAAGGAGCGCGAAGAAGCTCG
CAAAAAGAAGGAGCGCGAAGAAGCTGAAGATGAAGAAAAAAGGAAGCAGG
AGCGCGAAGAAGCTGAAGATGAAGAAAAAAGGAAGCAGGAAGCAGCCATG
ACGGGGAACATTCTACTCACTCAGAGCAACAGCAGTTCGCAGGTCAAGCG
AAGGAAGCAGCCATGACGGGGAACATTCTACTCACTCAGAGCAACAGCAG
TTCGCAGGTCAAGCGAAGATGGAACGACGACGTGGTCTTCAAAGGGCAAG
CAAGGACCGAGCCAGAGACAAAGAAGAGATTTGTGAACGACACCATCCGT
AATGATTTCCACCGCCGCTTCCTCACGAAGTATATCAAATAGATGGAACG
ACGACGTGGTCTTCAAAGGGCAAGCAAGGACCGAGCCAGAGACAAAGAAG
AGATTTGTGAACGACACCATCCGTAATGATTTCCACCGCCGCTTCCTCAC
GAAGTATATCAAATAG
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