mRNA_E-siliculosus-1a_F_contig153.3074.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig153.3074.1
Unique NamemRNA_E-siliculosus-1a_F_contig153.3074.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: D7FVN2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN2_ECTSI)

HSP 1 Score: 480 bits (1235), Expect = 1.650e-167
Identity = 252/256 (98.44%), Postives = 255/256 (99.61%), Query Frame = 1
Query:  160 MRHRASAISQQRDRCATLTMGAAGKKRKKMEKDALKYADGINKNVARETQKEADVIAERLLKTCAEPKRDLTKIAAEIADLRSRTSALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGDCKSTGAGSLNIRYTSMIDGTGKETGGSQTGEQDRVVDVDVAFVGQGVLVLESVSAKSKKPLSLVFAREPDLEGELAKLRVAGDKKDDKKKK 927
            MRHRASAIS+QRDRCATLTMGAAGKKRKKMEKDALKYADGINKNVARETQKEADVIAERLLKTCAEPKRDLTKIAAEIADLRSRTSALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFF+TLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSG CKSTGAGSLNIRYTSMIDGTGKETGGSQTGEQDRVVDVDVAFVGQGVLVLESVSAKSKKPLSLVFA+EPDLEGELAKLRVAGDKKDDKKKK
Sbjct:    1 MRHRASAISEQRDRCATLTMGAAGKKRKKMEKDALKYADGINKNVARETQKEADVIAERLLKTCAEPKRDLTKIAAEIADLRSRTSALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFFITLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGGCKSTGAGSLNIRYTSMIDGTGKETGGSQTGEQDRVVDVDVAFVGQGVLVLESVSAKSKKPLSLVFAKEPDLEGELAKLRVAGDKKDDKKKK 256          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: A0A835YNB0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB0_9STRA)

HSP 1 Score: 170 bits (430), Expect = 3.700e-46
Identity = 106/223 (47.53%), Postives = 135/223 (60.54%), Query Frame = 1
Query:  229 GKKRKKMEKDALKYADGINKNVARETQKEADVIAERLLKTCAEPKRDLTKIAAEIADLRSRTSALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGDCKSTGAGSLNIRYTSMIDGTGKE-TGGSQTGEQDRVVDVDVAFVGQGVLVLESVSAKSKKPLSLVFAREPDLEGELAKLRV 894
            GKK++ +E D     DG  +    E +K  D +A +LL  C    RD   I A+  DL S+  A+KPAQS EL KDWRLV+ S  D +  +G+GLHKLPLTRM+D F++  G     R I T EVLRVIGPFPN++N LSG  KS G   L I YTSMIDGTGKE T G+     D  V ++V FVG  ++V     A   + + +V+ RE DLEG L +LRV
Sbjct:   52 GKKKRALEVDE----DGTVQQSKAELKK-LDELAAQLLNLCTTNARDTAAIQAQARDLGSK--AVKPAQSAELSKDWRLVYVSSGDVLGALGSGLHKLPLTRMEDQFVSFAGSRGLGREITTTEVLRVIGPFPNVKNVLSGTYKSMGTSELLINYTSMIDGTGKEITSGNAA--MDGNVSIEVVFVGSDIMVTAPRDASGARQV-MVYQREEDLEGALKRLRV 264          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: A0A7S2UVC0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVC0_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.980e-43
Identity = 96/223 (43.05%), Postives = 138/223 (61.88%), Query Frame = 1
Query:  235 KRKKMEKDALKYADGINKNVARETQKEADVIAERLLKTCAEPKRDLTKIAAEIADLRSRTSALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGDCKSTGAGSLNIRYTSMIDGTGKET-GGSQTGEQDRVVDVDVAFVGQGVLVLESVSAKSKKPLSLVFAREPDLEGELAKLRVAG 900
            K+KK   +  +      KNV    ++EA ++A+ LL+ C   KRD  KI++ + +L+  T ++ PAQS  L  DW +VF +D DA+  VGTGL KLPLT+M+  F++ +G  +  R+I   E+LR++GPFPN++N LSG  K+ GA SL+I+Y  MIDGTGKE   GS T   DR + ++V FVG+  LV    S++      +V  RE DL+  L KLRV G
Sbjct:   58 KKKKSRSNGTEEKTLKKKNV----EQEAGIVADGLLELCTAEKRDTEKISSVVEELKKYTDSIMPAQSSNLRGDWEVVFVTDADALDHVGTGLRKLPLTKMEAMFLSFDGSRSVGRSIEASEILRILGPFPNVKNKLSGTYKAQGARSLSIKYDLMIDGTGKEVKSGSAT--TDRSISINVEFVGEKALVATIPSSQH----IMVLKREVDLDEALRKLRVDG 270          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: A0A7S3YGC3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGC3_HETAK)

HSP 1 Score: 112 bits (281), Expect = 4.030e-26
Identity = 69/151 (45.70%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  454 DWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGD--CKSTGAGSLNIRYTSMIDGTGK--ETGGSQTGEQDRVVDVDVAFVGQGVLVLESVSAKSKKPLSLVFAREPDLEGELAKLRV 894
            DWRL + S    +  +GTGLHKLPLTRM+D F++  G     R     EVLRV+GPFPNLRN LSGD    S+G G ++++YT MIDGTGK  E+G       DR  ++ V + G   LV+      +K   +LVF RE +L+  L  LRV
Sbjct:    1 DWRLAYVSAAAGLDEIGTGLHKLPLTRMEDLFLSFSGSKAAGRAAACTEVLRVLGPFPNLRNKLSGDFGISSSGTG-ISLKYTQMIDGTGKMLESGNGM----DRKNNLQVIYSGLDGLVM-----LTKTGCALVFQRETNLQAALKALRV 141          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: A0A8J2STN9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STN9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.670e-25
Identity = 73/199 (36.68%), Postives = 110/199 (55.28%), Query Frame = 1
Query:  319 DVIAERLLKTCAEPKRDLTKIAAEIADLRSRTSALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGDCKSTGAGSLNIRYTSMIDGTGKETGGSQTGEQDRVVDVDVAFVGQGVLVLESVSAKSKKPLSLVFAREPDLEGELAKLRVAGDKKDD 915
            D  A ++L+ C E  RD   I A + DL +  +   P   +    DWRLV+A  D+ +  +GTGLH++PL  ++D F++LE   + A      EV+RVIGPFPN++N L+G   + G  +L + YT +IDGTG E     T  Q R V + +A + + +LV+ + S  +     LVF RE D    L +LRV  +  +D
Sbjct:   75 DEKASKVLELCKEENRDFDAIDAAVKDLAALPAY--PDIGFRARGDWRLVWAKSDEGVGFIGTGLHRVPLANLEDQFLSLEADGSCALT----EVIRVIGPFPNVKNLLTGT-STVGPSTLRLTYTKVIDGTGAEL----TSSQARSVKLRLAALSKSLLVVAAASIDADD--WLVFEREDDFADALERLRVPPNTPED 260          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: A0A7S1VIR5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIR5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.900e-21
Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  418 ALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGDCKSTGAGS-----LNIRYTSMIDGTGKETGGSQTGEQDRVVDVDVAFVGQGVLV-LESVSAKSKKPLS------LVFAREPDLEGELAKLRV 894
            +L+P  + +   D+RL +A  D+ +  VGTGLHK+PL RMQ+ F++L+G +     I  +EV+ ++GPFPN+RNTL GDC    AG        +++ SMIDGTG E     +G + R V + + F  +  LV +         PL       LVF RE DL+G+LA+ RV
Sbjct:  240 SLRPLTTSKTKLDYRLAWAGSDETLCHVGTGLHKVPLARMQEVFLSLKGRNE----IEVLEVISILGPFPNVRNTLQGDCMDMKAGDGSFTEWTVKWESMIDGTGNEI---LSGGEARKVPLHMYFSDKNALVAVVPNDDNDSDPLGENGKNVLVFVREKDLDGKLAENRV 403          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: A0A7S2KRS1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KRS1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.340e-21
Identity = 73/195 (37.44%), Postives = 109/195 (55.90%), Query Frame = 1
Query:  364 RDLTKIAAEIADL------RSRTSALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGDCK-STGAGS--LNIRYTSMIDGTGKETGGSQTGEQDRVVDVDVAFVG-QGVLVLESVSA-------KSKKPLSL-VFAREPDLEGELAKLRV 894
            RD++ I A +  L       S ++ ++   S +   D+++V+A  D A+  VGTGLHK+PL R+Q+ F+++       + +   EV+R++GPFPN++N L G+ K S G G   L   Y+SMIDGTGKE   S  G + R VD+ V +   Q ++   S+         +S    SL VF RE DL+GEL  LRV
Sbjct:    2 RDMSGILARLRMLCTDFGTNSSSNNIRSITSRQEFLDYKMVWAGSDAAVCHVGTGLHKVPLARLQEVFLSIG-----KKRVEINEVIRILGPFPNVKNMLQGNVKVSVGGGESVLTFTYSSMIDGTGKEL--SAAGSEQRKVDLKVLYAADQAIVCTTSIDDDGAVDYFESDNGASLLVFFREKDLDGELDALRV 189          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: A0A7S2XKB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKB3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.280e-20
Identity = 71/193 (36.79%), Postives = 102/193 (52.85%), Query Frame = 1
Query:  364 RDLTKIAAEIADLRSRTSALKPAQSYELGK--DWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGDCKSTGAGSLNIRYTSMIDGTGKETGGSQTGEQDRV--VDVDVAFVGQGVLVLESVSAKSKKPLS------------LVFAREPDLEGELAKLRV 894
            RDL  I  ++ +L     A +  +    G+  D+R+ +   DDA+  VGTGLHK+PL R+QD FMT+  G N    +   EV+R++GPFPN+RNTLSGD   +  G L   Y  M+DG GK+    + G  D V  + +++ F     +V  +V  K  K               L+F REP+LE +L  LRV
Sbjct:  155 RDLDSILGKLKELSQLEGATRGLRVLAAGENVDYRMAWVGSDDAVCHVGTGLHKVPLARLQDVFMTV--GKN---RVEVFEVIRILGPFPNVRNTLSGDVAMS-KGQLQFSYDMMMDGLGKQL---EAGTDDNVRKLKLNILFADSNAIVA-TVPNKDAKATDVDDIMGENGANVLLFVREPELETKLEILRV 337          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: A0A7S2I456_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I456_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.480e-20
Identity = 74/225 (32.89%), Postives = 116/225 (51.56%), Query Frame = 1
Query:  307 QKEADVIAERLLKTCAEPKRDLTKIAAEIADLRSRTS--------ALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGDCK---------STGAGSLNIRYTSMIDGTGKETGGSQTGEQD--RVVDVDVAFVGQGVLV--LESVSAKSKK-PLS------LVFAREPDLEGELAKLRVA 897
            QK    + +++      P  DL ++ + I  L  +T+        AL+        K++R+V+   D+A+  +GTGLHK+PL R+++ F+ LE      + +  +EV+R++GPFPN+RNTL GD             G     I Y SMIDGTGKE      G++D  ++VD+DV F    V+V  +  V  + K+ PL       L+F +E  +  +L KLR A
Sbjct:  180 QKVITTVVDQIETLLESPNTDLNELLSLIRTLTDKTASQTGSIAGALRNLSISPQSKNYRMVWVGSDEAVCHIGTGLHKVPLARLEEVFLCLE-----KKTVQVLEVIRILGPFPNVRNTLMGDSSVIKPPGGTGEKGKTKFRIEYNSMIDGTGKEI---LAGKEDNVKIVDLDVLFADDKVMVCVVPPVEGEEKQDPLGENGSKVLLFFQEDYMNDKLEKLRAA 396          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Match: A0A1Z5JD44_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JD44_FISSO)

HSP 1 Score: 102 bits (253), Expect = 2.320e-20
Identity = 72/203 (35.47%), Postives = 112/203 (55.17%), Query Frame = 1
Query:  319 DVIAERLLKTCAEPKRDLTKIAAEIADLRSRTSALKPAQSYELGKDWRLVFASDDDAISVVGTGLHKLPLTRMQDFFMTLEGGSNTARNIVTI-EVLRVIGPFPNLRNTLSGDCKST---GAGSLNIRYTSMIDGTGKETGGSQTGEQDRVVDVDVAFVGQGVLVLESVSAKSKKPLS------LVFAREPDLEGELAKLRVA 897
            D+ +E   KT + P  D+  +  E+    S +S L         +D+RL +   DD+++ +GTGLHK+PL R+Q+ F++  G     RN V + EV+R++GPFPN+RNTLSG  +S+   G    N+++ SM+DGTGKE      G+++ +  V +       +V+ + S     P        L+F RE DLE +L  LRVA
Sbjct:  146 DIKSENNKKTVSVP--DILALVRELTQQTS-SSPLTQLVGTTQRRDYRLAWVGSDDSVTHIGTGLHKVPLARLQEVFLSFPG-----RNRVLLQEVIRILGPFPNVRNTLSGSSRSSTRDGVTEWNVQWESMVDGTGKEL---LAGKEENIKSVPLRVYYSDEMVIIA-SRPCDDPWQGNGENVLLFLREDDLENKLEALRVA 336          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig153.3074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN2_ECTSI1.650e-16798.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNB0_9STRA3.700e-4647.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UVC0_9STRA6.980e-4343.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YGC3_HETAK4.030e-2645.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2STN9_9STRA4.670e-2536.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1VIR5_9STRA1.900e-2139.18Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2KRS1_9STRA2.340e-2137.44Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2XKB3_9STRA1.280e-2036.79Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2I456_9STRA1.480e-2032.89Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A1Z5JD44_FISSO2.320e-2035.47Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig153contigE-siliculosus-1a_F_contig153:67393..70777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size870
Model size1356
Exons5
Ec32 orthologEc-01_006090.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2E31Z@1,2SA75@2759
Seed eggNOG ortholog2880.D7FVN2
Seed ortholog evalue2.5e-134
Seed ortholog score485.0
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928040.3065767-UTR-E-siliculosus-1a_F_contig153:67392..674521622928040.3065767-UTR-E-siliculosus-1a_F_contig153:67392..67452Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig153 67393..67452 +
1696318783.7217543-UTR-E-siliculosus-1a_F_contig153:67392..674521696318783.7217543-UTR-E-siliculosus-1a_F_contig153:67392..67452Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig153 67393..67452 +
1622928040.4038932-UTR-E-siliculosus-1a_F_contig153:70351..707771622928040.4038932-UTR-E-siliculosus-1a_F_contig153:70351..70777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig153 70352..70777 +
1696318783.7999723-UTR-E-siliculosus-1a_F_contig153:70351..707771696318783.7999723-UTR-E-siliculosus-1a_F_contig153:70351..70777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig153 70352..70777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928040.3289862-CDS-E-siliculosus-1a_F_contig153:67452..676381622928040.3289862-CDS-E-siliculosus-1a_F_contig153:67452..67638Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 67453..67638 +
1696318783.7351713-CDS-E-siliculosus-1a_F_contig153:67452..676381696318783.7351713-CDS-E-siliculosus-1a_F_contig153:67452..67638Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 67453..67638 +
1622928040.3443363-CDS-E-siliculosus-1a_F_contig153:68046..683401622928040.3443363-CDS-E-siliculosus-1a_F_contig153:68046..68340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 68047..68340 +
1696318783.7457263-CDS-E-siliculosus-1a_F_contig153:68046..683401696318783.7457263-CDS-E-siliculosus-1a_F_contig153:68046..68340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 68047..68340 +
1622928040.3601372-CDS-E-siliculosus-1a_F_contig153:68831..689071622928040.3601372-CDS-E-siliculosus-1a_F_contig153:68831..68907Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 68832..68907 +
1696318783.7558956-CDS-E-siliculosus-1a_F_contig153:68831..689071696318783.7558956-CDS-E-siliculosus-1a_F_contig153:68831..68907Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 68832..68907 +
1622928040.3781588-CDS-E-siliculosus-1a_F_contig153:69600..696431622928040.3781588-CDS-E-siliculosus-1a_F_contig153:69600..69643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 69601..69643 +
1696318783.7664683-CDS-E-siliculosus-1a_F_contig153:69600..696431696318783.7664683-CDS-E-siliculosus-1a_F_contig153:69600..69643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 69601..69643 +
1622928040.393652-CDS-E-siliculosus-1a_F_contig153:70080..703511622928040.393652-CDS-E-siliculosus-1a_F_contig153:70080..70351Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 70081..70351 +
1696318783.7816112-CDS-E-siliculosus-1a_F_contig153:70080..703511696318783.7816112-CDS-E-siliculosus-1a_F_contig153:70080..70351Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 70081..70351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig153.3074.1prot_E-siliculosus-1a_F_contig153.3074.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig153 67453..70351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig153.3074.1

>prot_E-siliculosus-1a_F_contig153.3074.1 ID=prot_E-siliculosus-1a_F_contig153.3074.1|Name=mRNA_E-siliculosus-1a_F_contig153.3074.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=290bp
MKCTWLQASCISLGVLRLSLLSKGFIVTGTSRLMRHRASAISQQRDRCAT
LTMGAAGKKRKKMEKDALKYADGINKNVARETQKEADVIAERLLKTCAEP
KRDLTKIAAEIADLRSRTSALKPAQSYELGKDWRLVFASDDDAISVVGTG
LHKLPLTRMQDFFMTLEGGSNTARNIVTIEVLRVIGPFPNLRNTLSGDCK
STGAGSLNIRYTSMIDGTGKETGGSQTGEQDRVVDVDVAFVGQGVLVLES
VSAKSKKPLSLVFAREPDLEGELAKLRVAGDKKDDKKKK*
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mRNA from alignment at E-siliculosus-1a_F_contig153:67393..70777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig153.3074.1 ID=mRNA_E-siliculosus-1a_F_contig153.3074.1|Name=mRNA_E-siliculosus-1a_F_contig153.3074.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3385bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig153:67393..70777+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTTCCACTTGGTGTTGATTGAGCCCTACTGCTGTGTAGCACTAAGAGAG GGAGGAAGAGATGAAATGCACTTGGTTACAGGCGTCATGCATTTCTCTGG GCGTCTTGCGTCTTTCCTTGTTGAGTAAAGGTTTCATCGTGACAGGAACA TCGCGGCTAATGCGACATCGCGCCTCCGCCATCTCCCAGCAGCGCGACAG GTGCGCCACCCTCACGATGGGGGCGGCCGGCAAAAAGCGAAAGAAGGTAA GGCGGTGCTTGTGTAGTTTGCCTTCTCTTGCTGTGGGTTCCTATCTCAAG CCTCAAAAGTTGTGTCACGTCACCTCGCTGTGATAGGACAGTTTTGCCCG CAGGATACAACGCGGCTTGGCATGTTTCATGTGTCATTTGTTTTGTTGTG CCGCAGTTCAGGGAAGTCTTTCTGTGTGTGTATTTATTTTTCCTTAGTAA ATACTGCTGCTCTATCCATACAAGTAGGCATACAAGGTACCCGATGCGGC AAGTGGGGACACATTCTTCATCTCATTGTAGGCTCAGTGTGGTTTTTCCA TGTTCATGTTGCAGGAGCGTCCGTTTGAAATCCCCACAACGCGTTGACAC CCTCCCTGCTCCCAAACTGCTGTGCTTGCTGATACATACCATACTGCTGC ACAGATGGAGAAGGATGCCTTGAAGTACGCGGACGGAATCAACAAGAACG TCGCTCGCGAGACGCAGAAGGAGGCGGACGTTATTGCCGAGCGGTTGTTA AAGACATGCGCGGAACCAAAGCGAGACCTCACCAAGATTGCCGCCGAGAT CGCGGACCTCCGATCGCGAACTTCGGCTCTGAAACCTGCCCAAAGCTACG AACTCGGGAAGGACTGGCGACTGGTGTTCGCAAGTGACGACGACGCGATA AGTGTCGTAGGCACGGGGTTGCATAAGCTGCCACTCACCAGGATGCAGGT AAGGGGGAAACGAACGCGCACGCGCACAGCGTAGCTGTGTAGCATTTCAG GGAACGACAGTAGTAGATATCATGAAATTTCAAGGTTATCGGCACCTCAA ATCAACGCCATTCTGCAGCCACAAACCATAGCGGCGTTGCCGTCCTCACG AAGTAACCCCTGGAATACTTGGCGAGTCCCGTCCGACTCATCGCAACAAT CGTTGTCGTTAAGCTCTTGTATGAAGTGCTAAAGTAGGTCAGCTTTAAGG TGCCTAAAAGTATGGTGTAGTTGGCGACTTGGCGGCGAACGTATAAAGGG AGCGTCTCTGTCGGCAACGTTCAGCAGCATGGACATCACTGGATACTCAA ATAAATAAATCCTGGTACTTCAGGACCATTGACTTGATTACTCCTTGCTG CATGTGTCTCAACCGTCAACGCACGAGGAAACATCCCAGAACCCATCATC GTTTTGACAGCACAGCACGCCTGTTCTCTTGCCCAACAGGATTTCTTCAT GACTCTTGAAGGCGGCAGCAACACGGCGAGAAACATTGTCACGATCGAAG TGCTGCGCGTGATAGGTGCGTGACACAGGGTGCTGGTTCCCCCCCTTTCG CAGTGTATTGGGCGAGCTGTTTTTCTTTACTCACTCAAAGCACGCCTAAG GTTGGTTGGGAGCCATGCGTTTAAGCGGCTACACGTAGAAATGCGTGGTA CCCCCATGTAACATTAGAAGATCCTGCTTAGGTATGTATAATCCGAGTTG GATGCCCTATCGAACTGCTGAATCTTGGCGTCATTCGCTAGCAGCAAGCT GATGCTAACACTACACACTACAACGCAGTCCATCGCCGGAGTTTTGTCAA GGTAGCAGCACCATGACTGCGTGGCTGCACGTTGTACGGGTATGACTCGC TCGTGTCGAGTTGAATGGCTTTTCCATTTGAACTGCAACCGTACGTCAAA CGCTCAGTATTCTTTCGAACGTGCTTGAGTCAGTCCTGCTGAGCATCAAA ATGCACAAGTCGCACGCAACTTTTGGTCAAAGTGGGATTTCTTCATCTCT GGGGTGGATTCACCCTATCGACAGAACTCTCTTGTGTTCCATTCCGCGCT TCGAACACGTGTTCCAACTCATGAGGTCGAGTGTCTCTGGTGTCGTTCTC GCTTGAGATTTTTCGGGCTACCGCGATGGTCTCACACCGCCCGTCGAAAA CCTTGTGTGTGTTTGCCGCTTCTCTGTCGCTCTTCTACGTCTTTCTTTGG ACGGCCAGGCCCTTTCCCGAACCTTCGCAACACCTTGTCTGGGGACTGCA AGTGAGCGTTGTGGAATTCAGCAGCAAGCATGGTAGCAAGTACTTTTTTT TTTGTACATTTGTAGTTCTTTTTTTTCATAGCAATCCGTATTAATAGACC GCCCCAGTTGCTGGTTGCGGCCCCGGATGGCCGTGCTGAATTTGTTCACG ATCCTTGTCAGCATGAGACATATTCTGCCCAGCGTGGTTTTCTTTCTAGT CAAATGAGCACCGCAAACGCTCAGCGACGATTGTATGTACCTCTTGCCCT GGCCATGCCGAACAAGATTCAAGGTTTTCCCACGCCTGCAATTCGAACCC TCTCGCTGTTTCAACGATCTAACTATCGCGTTGCGCGATCGACGACCTTT TGATTCCAGCGAAGACAGGCGCAGATTGTAAACCCCCCACCCCTTCCCCC TTCGTCGCGCACGGCACCGCACGTACCGCGGCTGACAGATCCACGGGCGC GGGTTCGTTGAATATCCGCTACACATCAATGATTGACGGGACGGGGAAAG AGACCGGGGGGTCGCAGACGGGAGAACAAGACCGGGTCGTTGATGTTGAT GTTGCGTTCGTGGGGCAAGGGGTATTGGTGTTGGAATCTGTATCGGCGAA GTCCAAGAAACCGTTGTCTCTCGTCTTCGCGAGGGAGCCGGACTTGGAAG GAGAGCTAGCGAAGCTCCGTGTGGCCGGGGACAAGAAAGATGATAAGAAG AAGAAATAAGTGCCTGTGTGTGGTGTTTGAGGCGAAACGAAAGGCGTATT TCAAGAGGTTTCAAGAGCCGTATAGTGTCAAAACAGTGCGATGGCGGGTG GATTGTTTCGCACGTGGTAGCGTGAAATTGTCCCCGATAGATTAATTAGA CCTAAACGAGAGAAACGGATTGCGTCGAGTGTGGGAGCTCGTGTTCATCC AAGGTTAACAAGTCGTGGCCCGTGGATGTTAGGTCAGGGGGTAGTGTAAG CGCCTGGAGCAAGTGTAGGTTAGGCTGGATAGATGACCAGGCCCAGCTAT CTCAGAAACAGTCTAAGTGTGAAGGATGTGCAAACTCAGACAACTCGTCG CCAACGTCGCCAAATTACCTTTTACCGCTCTGCAGCCGTCACCTCTACTA CTGCTGTACGTTGGTTTGCTTGCGGAATAACCATC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig153:67393..70777+

>mRNA_E-siliculosus-1a_F_contig153.3074.1 ID=mRNA_E-siliculosus-1a_F_contig153.3074.1|Name=mRNA_E-siliculosus-1a_F_contig153.3074.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1740bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig153:67393..70777+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAATGCACTTGGTTACAGGCGTCATGCATTTCTCTGGGCGTCTTGCG
TCTTTCCTTGTTGAGTAAAGGTTTCATCGTGACAGGAACATCGCGGCTAA
TGCGACATCGCGCCTCCGCCATCTCCCAGCAGCGCGACAGGTGCGCCACC
CTCACGATGGGGGCGGCCGGCAAAAAGCGAAAGAAGATGAAATGCACTTG
GTTACAGGCGTCATGCATTTCTCTGGGCGTCTTGCGTCTTTCCTTGTTGA
GTAAAGGTTTCATCGTGACAGGAACATCGCGGCTAATGCGACATCGCGCC
TCCGCCATCTCCCAGCAGCGCGACAGGTGCGCCACCCTCACGATGGGGGC
GGCCGGCAAAAAGCGAAAGAAGATGGAGAAGGATGCCTTGAAGTACGCGG
ACGGAATCAACAAGAACGTCGCTCGCGAGACGCAGAAGGAGGCGGACGTT
ATTGCCGAGCGGTTGTTAAAGACATGCGCGGAACCAAAGCGAGACCTCAC
CAAGATTGCCGCCGAGATCGCGGACCTCCGATCGCGAACTTCGGCTCTGA
AACCTGCCCAAAGCTACGAACTCGGGAAGGACTGGCGACTGGTGTTCGCA
AGTGACGACGACGCGATAAGTGTCGTAGGCACGGGGTTGCATAAGCTGCC
ACTCACCAGGATGCAGATGGAGAAGGATGCCTTGAAGTACGCGGACGGAA
TCAACAAGAACGTCGCTCGCGAGACGCAGAAGGAGGCGGACGTTATTGCC
GAGCGGTTGTTAAAGACATGCGCGGAACCAAAGCGAGACCTCACCAAGAT
TGCCGCCGAGATCGCGGACCTCCGATCGCGAACTTCGGCTCTGAAACCTG
CCCAAAGCTACGAACTCGGGAAGGACTGGCGACTGGTGTTCGCAAGTGAC
GACGACGCGATAAGTGTCGTAGGCACGGGGTTGCATAAGCTGCCACTCAC
CAGGATGCAGGATTTCTTCATGACTCTTGAAGGCGGCAGCAACACGGCGA
GAAACATTGTCACGATCGAAGTGCTGCGCGTGATAGGATTTCTTCATGAC
TCTTGAAGGCGGCAGCAACACGGCGAGAAACATTGTCACGATCGAAGTGC
TGCGCGTGATAGGCCCTTTCCCGAACCTTCGCAACACCTTGTCTGGGGAC
TGCAAGCCCTTTCCCGAACCTTCGCAACACCTTGTCTGGGGACTGCAAAT
CCACGGGCGCGGGTTCGTTGAATATCCGCTACACATCAATGATTGACGGG
ACGGGGAAAGAGACCGGGGGGTCGCAGACGGGAGAACAAGACCGGGTCGT
TGATGTTGATGTTGCGTTCGTGGGGCAAGGGGTATTGGTGTTGGAATCTG
TATCGGCGAAGTCCAAGAAACCGTTGTCTCTCGTCTTCGCGAGGGAGCCG
GACTTGGAAGGAGAGCTAGCGAAGCTCCGTGTGGCCGGGGACAAGAAAGA
TGATAAGAAGAAGAAATAAATCCACGGGCGCGGGTTCGTTGAATATCCGC
TACACATCAATGATTGACGGGACGGGGAAAGAGACCGGGGGGTCGCAGAC
GGGAGAACAAGACCGGGTCGTTGATGTTGATGTTGCGTTCGTGGGGCAAG
GGGTATTGGTGTTGGAATCTGTATCGGCGAAGTCCAAGAAACCGTTGTCT
CTCGTCTTCGCGAGGGAGCCGGACTTGGAAGGAGAGCTAGCGAAGCTCCG
TGTGGCCGGGGACAAGAAAGATGATAAGAAGAAGAAATAA
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