mRNA_E-siliculosus-1a_F_contig15290.3065.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15290.3065.1
Unique NamemRNA_E-siliculosus-1a_F_contig15290.3065.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15290.3065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15290contigE-siliculosus-1a_F_contig15290:18..948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size216
Model size217
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928039.0391374-CDS-E-siliculosus-1a_F_contig15290:17..581622928039.0391374-CDS-E-siliculosus-1a_F_contig15290:17..58Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15290 18..58 -
1696318783.0573318-CDS-E-siliculosus-1a_F_contig15290:17..581696318783.0573318-CDS-E-siliculosus-1a_F_contig15290:17..58Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15290 18..58 -
1622928039.0537136-CDS-E-siliculosus-1a_F_contig15290:773..9481622928039.0537136-CDS-E-siliculosus-1a_F_contig15290:773..948Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15290 774..948 -
1696318783.0660968-CDS-E-siliculosus-1a_F_contig15290:773..9481696318783.0660968-CDS-E-siliculosus-1a_F_contig15290:773..948Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15290 774..948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15290.3065.1prot_E-siliculosus-1a_F_contig15290.3065.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15290 18..948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15290.3065.1

>prot_E-siliculosus-1a_F_contig15290.3065.1 ID=prot_E-siliculosus-1a_F_contig15290.3065.1|Name=mRNA_E-siliculosus-1a_F_contig15290.3065.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp
GEGGTIRSSTVPSLVGKTKQATPFPMAGEQPMTANNQEYTKSRRQGRQEG
NKHHHGTKGEGGTIRSSTVPSL
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mRNA from alignment at E-siliculosus-1a_F_contig15290:18..948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15290.3065.1 ID=mRNA_E-siliculosus-1a_F_contig15290.3065.1|Name=mRNA_E-siliculosus-1a_F_contig15290.3065.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=931bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15290:18..948- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGAGGGAGGGACGATCCGTTCTTCTACCGTGCCATCGCTCGTCGGGAA
GACCAAGCAAGCCACGCCGTTCCCAATGGCCGGCGAACAACCGATGACGG
CGAACAACCAAGAATACACCAAGTCGAGACGGCAAGGACGACAAGAAGGC
AACAAACACCACCACGGAACGAAAGGCGAGAGAGGGGGGTCAAGGGTCGT
CTACGTGAACGTAGACTGGCTAACTGCTGCAGTAGAGAGTGTGCGGTCGG
TGTTTCGCTGAGATCGAGGCTGGTTTCTCTCGGCAGACTACGTCAAGATG
GGGGGGCTAATCGCTATTAGTTCTTGGCAGATGTCGATCGAGATGGAGAC
GGATCTCGGCAAACAAGACGGCTCTCTGCGTACGTACTTGCTCGCACGCA
GCTACGATAGTGAGTGTTTGATTCTTTTCTCGCCGTTTGCCCTTGGGGGG
GGCGGGGGAGCGCGCCAGGAGGCGAAAGGAAAAATAGGTAGGTAAAGGGC
CGGCGAGAAACCCGGGGTAGAGATGAATGAGCCCGTGAGACCGCTATTGA
AATGCTAGAGCTCGCATGCAGCCTTCTTTTGGCTTGCAGTGGAAAACCTG
ACCAGTCGGTTGTAAGAACCACGTTCTACTCCCGACTCGGTAGCTTTTGC
ACGCATGCAGCTCTCGCTTCTCTTTAGAGCAGGGAAGCCGGCTCGTTTGT
TACTGCTGCACCACCCGGGCGTCGTTTCAGCGTGTAGACTTCCATGCATT
CATGGATGGTCCATTGTAGAGCAAAGTGCGGCAGCAAGGCTAGCTCTCGC
CGGTCGTTGTGGGCTCGCAGCGGCTGACCCCCCTCGCGCTTTCTTTTGTC
TCCGTCCCCCTCTCGTGCCGTGCTGTGCTGTACAGAGCAGGTGAGGGAGG
GACGATCCGTTCTTCTACCGTGCCATCGCTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15290:18..948-

>mRNA_E-siliculosus-1a_F_contig15290.3065.1 ID=mRNA_E-siliculosus-1a_F_contig15290.3065.1|Name=mRNA_E-siliculosus-1a_F_contig15290.3065.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15290:18..948- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGAGGGAGGGACGATCCGTTCTTCTACCGTGCCATCGCTCGTCGGGAA
GACCAAGCAAGCCACGCCGTTCCCAATGGCCGGCGAACAACCGATGACGG
CGAACAACCAAGAATACACCAAGTCGAGACGGCAAGGACGACAAGAAGGC
AACAAACACCACCACGGAACGAAAGGGTGAGGGAGGGACGATCCGTTCTT
CTACCGTGCCATCGCTCGTCGGGAAGACCAAGCAAGCCACGCCGTTCCCA
ATGGCCGGCGAACAACCGATGACGGCGAACAACCAAGAATACACCAAGTC
GAGACGGCAAGGACGACAAGAAGGCAACAAACACCACCACGGAACGAAAG
GTGAGGGAGGGACGATCCGTTCTTCTACCGTGCCATCGCTCGTGAGGGAG
GGACGATCCGTTCTTCTACCGTGCCATCGCTC
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