mRNA_E-siliculosus-1a_F_contig1529.3063.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1529.3063.1
Unique NamemRNA_E-siliculosus-1a_F_contig1529.3063.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1529.3063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1529contigE-siliculosus-1a_F_contig1529:13682..14007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size144
Model size144
Exons2
Ec32 orthologEc-02_002490.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928038.7151604-CDS-E-siliculosus-1a_F_contig1529:13681..137261622928038.7151604-CDS-E-siliculosus-1a_F_contig1529:13681..13726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 13682..13726 -
1696318782.8822742-CDS-E-siliculosus-1a_F_contig1529:13681..137261696318782.8822742-CDS-E-siliculosus-1a_F_contig1529:13681..13726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 13682..13726 -
1622928038.7292893-CDS-E-siliculosus-1a_F_contig1529:13908..140071622928038.7292893-CDS-E-siliculosus-1a_F_contig1529:13908..14007Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 13909..14007 -
1696318782.8907378-CDS-E-siliculosus-1a_F_contig1529:13908..140071696318782.8907378-CDS-E-siliculosus-1a_F_contig1529:13908..14007Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 13909..14007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1529.3063.1prot_E-siliculosus-1a_F_contig1529.3063.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1529 13682..14007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1529.3063.1

>prot_E-siliculosus-1a_F_contig1529.3063.1 ID=prot_E-siliculosus-1a_F_contig1529.3063.1|Name=mRNA_E-siliculosus-1a_F_contig1529.3063.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp
MPRTKVRGGVCDCPGPIQITRLYSSAVQCLYTHAQLMRLLISNHSSC*
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mRNA from alignment at E-siliculosus-1a_F_contig1529:13682..14007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1529.3063.1 ID=mRNA_E-siliculosus-1a_F_contig1529.3063.1|Name=mRNA_E-siliculosus-1a_F_contig1529.3063.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=326bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1529:13682..14007- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCCGCACGAAGGTGCGTGGTGGTGTGTGCGATTGCCCCGGGCCAAT
TCAGATCACTCGACTGTACAGCAGTGCAGTGCAGTGCCTATATACACATG
TAGCGTGCGTTCGAACTTTTTTTGCAAGTCAATTTTTCACAAGACTCTTT
ATTCTTCTTGCGCATCGTCCTGTATTTTGAATTCTTGTTTCTTGGCTTCC
GGTTTCTGTCGTGCGTGAGAACAGACCACCCACGATACGTGTGTGCCTGG
CTGCTCCGGGCACCTTTTTTTCCCGGACCAGGCGCAACTGATGCGTCTTT
TGATCTCCAACCACAGCAGCTGTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1529:13682..14007-

>mRNA_E-siliculosus-1a_F_contig1529.3063.1 ID=mRNA_E-siliculosus-1a_F_contig1529.3063.1|Name=mRNA_E-siliculosus-1a_F_contig1529.3063.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1529:13682..14007- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCCGCACGAAGGTGCGTGGTGGTGTGTGCGATTGCCCCGGGCCAAT
TCAGATCACTCGACTGTACAGCAGTGCAGTGCAGTGCCTATATACACATA
TGCCCCGCACGAAGGTGCGTGGTGGTGTGTGCGATTGCCCCGGGCCAATT
CAGATCACTCGACTGTACAGCAGTGCAGTGCAGTGCCTATATACACATGC
GCAACTGATGCGTCTTTTGATCTCCAACCACAGCAGCTGTTGAGCGCAAC
TGATGCGTCTTTTGATCTCCAACCACAGCAGCTGTTGA
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