mRNA_E-siliculosus-1a_F_contig1529.3062.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1529.3062.1
Unique NamemRNA_E-siliculosus-1a_F_contig1529.3062.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1529.3062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1529contigE-siliculosus-1a_F_contig1529:12638..12904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size222
Model size267
Exons1
Ec32 orthologEc-02_002500.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928038.632651-UTR-E-siliculosus-1a_F_contig1529:12637..126821622928038.632651-UTR-E-siliculosus-1a_F_contig1529:12637..12682Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1529 12638..12682 -
1696318782.8642054-UTR-E-siliculosus-1a_F_contig1529:12637..126821696318782.8642054-UTR-E-siliculosus-1a_F_contig1529:12637..12682Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1529 12638..12682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928038.6561189-CDS-E-siliculosus-1a_F_contig1529:12682..129041622928038.6561189-CDS-E-siliculosus-1a_F_contig1529:12682..12904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 12683..12904 -
1696318782.873085-CDS-E-siliculosus-1a_F_contig1529:12682..129041696318782.873085-CDS-E-siliculosus-1a_F_contig1529:12682..12904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 12683..12904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1529.3062.1prot_E-siliculosus-1a_F_contig1529.3062.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1529 12683..12904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1529.3062.1

>prot_E-siliculosus-1a_F_contig1529.3062.1 ID=prot_E-siliculosus-1a_F_contig1529.3062.1|Name=mRNA_E-siliculosus-1a_F_contig1529.3062.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=74bp
MFFVVWYNQAKRGGMGGQGCLAGNNSSRVSTPGAREREREKRGRDAHKVR
QQKTGGFDGLLSSEEGREFYYQR*
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mRNA from alignment at E-siliculosus-1a_F_contig1529:12638..12904-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1529.3062.1 ID=mRNA_E-siliculosus-1a_F_contig1529.3062.1|Name=mRNA_E-siliculosus-1a_F_contig1529.3062.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=267bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1529:12638..12904- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTTTTGTTGTGTGGTACAACCAAGCCAAGCGGGGAGGGATGGGAGG
CCAGGGCTGCTTAGCGGGGAACAACAGCAGCAGGGTTTCGACGCCGGGCG
CGCGCGAGAGAGAGAGAGAGAAGAGAGGGAGAGACGCGCACAAGGTTCGT
CAACAGAAGACCGGTGGATTTGATGGGCTATTATCATCAGAGGAAGGAAG
GGAGTTTTATTATCAGAGATAGGGTTATAAACAGGGGAGAGAGGTTAAGA
AGAGAGCCAGCGAGCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1529:12638..12904-

>mRNA_E-siliculosus-1a_F_contig1529.3062.1 ID=mRNA_E-siliculosus-1a_F_contig1529.3062.1|Name=mRNA_E-siliculosus-1a_F_contig1529.3062.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1529:12638..12904- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTTTTGTTGTGTGGTACAACCAAGCCAAGCGGGGAGGGATGGGAGG
CCAGGGCTGCTTAGCGGGGAACAACAGCAGCAGGGTTTCGACGCCGGGCG
CGCGCGAGAGAGAGAGAGAGAAGAGAGGGAGAGACGCGCACAAGGTTCGT
CAACAGAAGACCGGTGGATTTGATGGGCTATTATCATCAGAGGAAGGAAG
GGAGTTTTATTATCAGAGATAGATGTTTTTTGTTGTGTGGTACAACCAAG
CCAAGCGGGGAGGGATGGGAGGCCAGGGCTGCTTAGCGGGGAACAACAGC
AGCAGGGTTTCGACGCCGGGCGCGCGCGAGAGAGAGAGAGAGAAGAGAGG
GAGAGACGCGCACAAGGTTCGTCAACAGAAGACCGGTGGATTTGATGGGC
TATTATCATCAGAGGAAGGAAGGGAGTTTTATTATCAGAGATAG
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