mRNA_E-siliculosus-1a_F_contig1528.3055.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1528.3055.1
Unique NamemRNA_E-siliculosus-1a_F_contig1528.3055.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1528.3055.1 vs. uniprot
Match: D8LGJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ0_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.000e-44
Identity = 89/124 (71.77%), Postives = 94/124 (75.81%), Query Frame = 1 
Query:   79 DGLGGWVMPEAGPDGEAKFKMVGPTGNCYGHSIASPLRIVCNSLDRGAYRFGLHPRSEGRRPPFKHVAHKRGRDADASDEAPAAKRCRCPKLSEEEVIAILSQGLAELEKAEHEAARAKEAAAA 450
            DG+GGWVMPEAGPDGEAKFKM GPTGNCY +S A            GAYRFGLHPRSEG        A+KRGRDADASDEAPAAKRC  PKLSEE++IAI  Q LAELEKAEHEAARAKE A A
Sbjct:    3 DGVGGWVMPEAGPDGEAKFKMTGPTGNCYDYSKARS----------GAYRFGLHPRSEGGE------AYKRGRDADASDEAPAAKRC--PKLSEEDIIAIFPQRLAELEKAEHEAARAKEVAEA 108
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1528.3055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGJ0_ECTSI1.000e-4471.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1528contigE-siliculosus-1a_F_contig1528:17263..22573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size681
Model size681
Exons4
Ec32 orthologEc-10_001860.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1528.3055.1prot_E-siliculosus-1a_F_contig1528.3055.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1528 17263..22573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928037.9500809-CDS-E-siliculosus-1a_F_contig1528:17262..176861622928037.9500809-CDS-E-siliculosus-1a_F_contig1528:17262..17686Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 17263..17686 -
1696318782.6786647-CDS-E-siliculosus-1a_F_contig1528:17262..176861696318782.6786647-CDS-E-siliculosus-1a_F_contig1528:17262..17686Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 17263..17686 -
1622928037.968606-CDS-E-siliculosus-1a_F_contig1528:18008..180831622928037.968606-CDS-E-siliculosus-1a_F_contig1528:18008..18083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 18009..18083 -
1696318782.6894555-CDS-E-siliculosus-1a_F_contig1528:18008..180831696318782.6894555-CDS-E-siliculosus-1a_F_contig1528:18008..18083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 18009..18083 -
1622928037.9804726-CDS-E-siliculosus-1a_F_contig1528:19100..192051622928037.9804726-CDS-E-siliculosus-1a_F_contig1528:19100..19205Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 19101..19205 -
1696318782.6972759-CDS-E-siliculosus-1a_F_contig1528:19100..192051696318782.6972759-CDS-E-siliculosus-1a_F_contig1528:19100..19205Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 19101..19205 -
1622928037.994686-CDS-E-siliculosus-1a_F_contig1528:22496..225731622928037.994686-CDS-E-siliculosus-1a_F_contig1528:22496..22573Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 22497..22573 -
1696318782.705002-CDS-E-siliculosus-1a_F_contig1528:22496..225731696318782.705002-CDS-E-siliculosus-1a_F_contig1528:22496..22573Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 22497..22573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1528.3055.1

>prot_E-siliculosus-1a_F_contig1528.3055.1 ID=prot_E-siliculosus-1a_F_contig1528.3055.1|Name=mRNA_E-siliculosus-1a_F_contig1528.3055.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=227bp
MRGSDGKGASPVPPSDDGHQQRQVSADGLGGWVMPEAGPDGEAKFKMVGP
TGNCYGHSIASPLRIVCNSLDRGAYRFGLHPRSEGRRPPFKHVAHKRGRD
ADASDEAPAAKRCRCPKLSEEEVIAILSQGLAELEKAEHEAARAKEAAAA
AAAARAAAAAKAAAAAAAAVRAAAADAAAAAAGVAAATADAAAAAVATAK
VVAVTAAASAAKTAALQAAEALAGKEA
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mRNA from alignment at E-siliculosus-1a_F_contig1528:17263..22573-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1528.3055.1 ID=mRNA_E-siliculosus-1a_F_contig1528.3055.1|Name=mRNA_E-siliculosus-1a_F_contig1528.3055.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5311bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1528:17263..22573- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGGGCAGCGATGGCAAGGGGGCATCTCCCGTACCTCCTTCTGATGA
CGGACATCAACAGAGGCAAGTTTCAGCGTAGTAAGGGGAAAAGAACAAAA
CCACAGCAGCTAGCAGCAGCAGCAACCACTGACTGCTTCAGAGGTCGGCG
GTATTTGCAATAACCAAGCAAGCAAGCGTAACAGAAAAGAGAGGAAATTA
CTGTTCTTGATCCTCTGTGTTTTCTGGTATCGTTATCTTTGTTGTGTCCC
TTTGCTGTTTGTGTGTGTTCTATTACCATTCGTACCAATACTATATTAAA
TATCTGTCTGAAACACAATATGTTGCCGGTGGATGTTGTTACCAAAGGTT
ATCACCAGGTGCATATTAAACATACATACATGTAGTGTACCAGATACTAA
ATGAAAAAAAATCTTGTGCTCCAGGCGTTTCGGAGCTTCATGTATACCAC
CGCCAAAACCACACAGACAGACAGACACTGATTTTTATCTCTATTTTTTT
TTTTTTATCGGTTTCCGAGGGCTCTTTTGTCGACCGGCGGGTGCGGTAGC
TGTTCTTTTGTTTAAGAAAGTACACATAACCTCACGGAAAGACTACCCGT
TCGAGATATAGCCTCAGTCGAATGGGAAATGGTGAAGTCTTTTCAGTAAG
TGGACTGAAACCGACTGGAGACTTGTTGTATCATTTTGTTTTCTTTTTCC
GAGTGGTTTGTACCCTATTTTTGTTTGTTTCCCCGCGGCATCGTCGTATG
TACCGGGTTTTTGCGACCACGGGCTCCCCATTTTTGTGGACTACAGAGCT
AATGTGCGAAACAACAAAACAAACAGCAGTATATATACGATGGGGTGCAA
GGGATGTCCGGGTACCATTTGAATCTCCAACAAAAAAAACGTAAATACGA
CTAAAATCACACGTTGTCGCGCTACCCCTTGCTTGGCTCCCAAGAGTTTT
CCCAACTAAAACGAACAAAATTTCAATAACTGATGTATGCAAGTAGTTTT
TACACGTACGTACCCAAAAGAAATAAATGTGTATGTTGCGAATACCTTTG
AGATTGGGATGGGATTGGGAAAGGGTCAGAAGTACTGTATGTGAAGAAAC
GCGGCGAAGACTCGGGCCGCTGCATGTTGTTGTACCTTGGATTGAGTGGT
CATGCGACCTTTTCGCAAATAAAGCATGTGGTTGGTGGTATCTGGGTGAG
AATGTACCACTTAGGGGCAGGTACAATAAAAAACGGTGAAGAAAATCGAA
CCAAGCATGCATGTACATATGCTAGACAGTCTATGTCTCAACGAGGAAGT
GTGGTAACCAACAATAAATAACAAACGGGGATGGATATATGTTTAAACAA
ACTATCAGCTTCCGATGCAGGCGAGTGAAACGAAGCTTGTTGTAGACAAA
GGAACACGGTCAATAGAGAGCAAAACAAGATGGCTGGAGTATAGACAGTG
AGAGGTCCCAGCGCATGCACGTCAATGGATCCCGAAGCGTTGCTCTCATG
CGTCCTCCACTAATGTCATCAGAACTCTTCTGTTCGAACAACCAGTAGCA
GGCAGGTCCCCTGCCTACTGCTCAGTTCACTTGACCGTTAAGCAAGGGCT
CTAAATGCATCTACGGCGCGAATCGTGGCTCTGAACCCTAGCTCCGCTTA
GCTGGAAGAGGCAGTATTCCGGCATTCCTTGGCACGATCTACTTGGTGTA
TTTGAGTATTGAACTTTACGGTCGGGTTGGACGGGTGTTGGACGTGACCC
CGTACGCCTCAAAGTTGCACTATGTAGTATCCTAGACATTGCATACCTGG
AGATGACAGTACTCCGGCTGTTCAAGGTACGATGTACCTGCATAATTTCG
TTTGATGCCGGGTAGGACGGGTGTTCGGCTTGACCCGCCCGTCTCCCTTG
CCTCGGCTGGCGTCAACAGTTGCACCCACCTTGTAGACAGAGGAACATGG
TCACTAGAGAGCACAACAAGATGGCTGGAGTATAGACAGTGAGAGGTCCC
AGCGCATGCACGTCAATGGATCCCGAAGCGTGCTCTCATGCGTCCTCCAC
TAATGTCATCAGAACTCTTCTGTTCGAACAACCAGTAGCAGGCAGGTCTC
TTGCCTACTGCTCAGTTCACTTGACCGTTAAGCAAGGGCTCTAAATGCAT
CTACGGCGAATCGTGGCTCTGAACCCTAGCTCCGCTTAGCTGGAAGAGGC
AGTATTCCGGCATTCCCTGGCACGATCTACTTGGTGTATTTTGGTATTGA
ACTTTACGGTCGGGTTGGACGGGTGTTCTGCTTGTCCTCCTGCGTCCGCA
GTTGGACCCACATCGCGGGTTCTAACGGGGTGCGAGTCAAATCCGAAGCA
TTTCACCTATAATCACCCAATATATATTCTGAGGGATGCTGTAATCCGTC
AAATAACGCTGCACTCGTTGATACTTGGTCGACCCTGTTTTTTTCGACGC
GGTGAACATCTCTAAATAATCTGGCTATAACGACATGTCATCGCGGATCA
GCGCCACACAGCATACAACGGAAGATTTTTTGGGGCTACAAGACTAGACT
ATAGCATCCAACGATGCACATTATATCACTTTTTGGGGGTCTTCCCGCGG
GACGTTCCGCGGATAGTTCGGAAGGTCCCGCGGGATGGATGAAGTTTTGC
GGAAAGTCCCACGGAAAATGTCTGTTTTCAACGGAGCTTCCGACTTCCCG
CCGGAACCTTTCGCGGGACTTTCCACTTCCCGCGGAAAGTCCCGAAGCTT
CCGCGGAAAGCCTTTGTTTTCGCGGAAGCTTCCGGACTTTCCGCGGAAAG
TGGCATATTCCGCGGAATGCAGAAAATATTTGATTGGTTGTAGCAGTGAA
GGCAGTATTGTCTATCTCTATGTATCACAGGGGATTTCTTGCGGTGTGGG
TACAGCTGAGGGCCAGTCCTGTTCTGGCCTCTATGCCTTCCCCGTTTATG
TCGCTCCTCGACCCAATCCCCGCCTCTCTCTGGCCATCCCCCCCCCCGCC
CGCGCCAAAATGATTTTCATTGTTTGACACTACAATGGACATACATGTCC
ATGTGCACTCGAGAGACGCCCGTGGACGTCCTCCGAGGACGTCGCCCGTG
GACGGTGGTCCACGGACGCGTCCACCCAAATTCGTGGATGGTCCACGGAC
ACGTCCATGGACAAAGTCAGTCCACGGACGAGATGGGGTACCGAGCCCTG
GTCCGCAGTGATGAATGAAGCGTTACTTCGAGTAGCCATCGTGGTCAAAG
TAGACTCTTTGCTCAGCGCTAGATGGTTCGTATGACCATCAGCGCTGACC
CTTGCACGTATTCCGTTTACTTGTCCCCTCCGCACTGTGGCTATGTTCGC
AATCGTGCAGTGACGCAGTGACGGATTGGGCGGATGGGTGATGCCCGAGG
CCGGTCCAGACGGGGAGGCCAAGTTCAAGATGGTCGGCCCAACTGGGAAT
TGCTACGGGCATTCCATAGCCAGGTACGCACGCACGTGGTTACCGACGAA
CGATAGCATCCCTCGCTTCGTGGTCGATGTAACGAATACAGCATCGTCTC
CTAGAATGAGCTGTGTCCCCTCAAGAGATGTGTCAGAACCACAATAAGTC
TCTGCTGTAGTCAACCCAGTCGTATATCCAGGAACGAGAGGAAACCCCTT
TGACCCACTCTTTGTCTTGAGTCAACCTTTGTCTAGCTTTACGGCGCCCA
CACGCTGCCATTGGAAGGCGAACATACATGGACCTTTGTTGTCGAATTCG
AAGCATTCACCGCCATGACAGGCAACGCCGTTGTTGGTACTGCTGTTGGT
GGGGTTTATCGCTCAAATGGCGTCGTATCTTCTTTGTATGGGCGAGGTAG
AGATCGGTGTGCTACTGACAAGGCTTGGGGGGTGAAAATCGGGGGGCGAA
GTGACACAGCCAGTTTGTTCTTCAGACATTGCGCCTATTTTCTCTCCAAA
TACGTAAGTCTCCGGAACTAGCGTGCACAACCCGAATGTGACTCACGCGA
GACTAGTTACACTCTCGTCGTTAGGGATAGAGTTAAAGCTGGCTGTGAGC
GTCTGAAGCGCGTTTTGCAAACTGGGGTAGGCGCACCAAGAGTTAACATG
GTTCCAGCGGGCACGAAATCTCAGGGTATTCTCAAATCGTTTCCCATCGC
GCGAGTTTTGCGTGTCCACCGTAGATGAGCGAGAGATCACGCGGACGTCC
CGCACTGTCTCGCTCGCACCCGTCCGTGATTGCCTGGTTCACGCCGTCTT
TCTGTCAAGTTGGACAAATGTTTTCTCAACCAGTTCTAAGAGCCGCTTTT
GTTTGGGGTACCTCCACCCAGATTTTAAGTTCTACTAGAGCATTCCCAGC
TAGAGTCATATGAAGGAACAGGTTTCACCTGTGGGGCGAGGACACAACCA
TGCCAGTGAAAGAAACATCAGTTTGGGCGCGTATCCAAAGTCAACGTAAA
CTTTTCTTGGTGTGTTGCAATACCTTGCTCCTGCAGACAGCCCCTTGCGC
ATCGTATGCAACTCGCTAGATCGGGGCGCATACCGCTTCGGTTTACACCC
TCGAAGCGAAGGGCGGTGTTGCAGGGGTGCCCTACTACATACCGCCCAAC
CGCTACAAGCGTTTGCCGAACCCTCGAACCGCTCGTTTGTTGCAAGTCGT
GTGGTCCACCCGAAAAGTGCTATTCTTCGAAGTCACGCCATTGTTCCCGC
TCCCATTCGCCCAACCAATGTCCAGCAACATTCGCAGCGCTAAAAAAGAG
CTGCTCGCGATACTACGTGGCGAGCAGCAGCTCACCGCGACAAGCGATGG
CACCGGCGACCCCGCCCGCAGCGCCGAGACGTCAATCCCGACCCGTTTTC
TGCGCGATGTCGCAAGCGGCATCTCTAGGAGCGACAGACGGCCACCGTTC
AAACACGTTGCGCACAAGCGAGGACGGGACGCCGATGCCTCCGACGAAGC
CCCAGCCGCCAAGAGGTGTCGGTGTCCGAAGTTGTCCGAGGAAGAGGTCA
TTGCCATACTTTCCCAGGGGCTGGCAGAGCTGGAAAAAGCCGAACACGAG
GCAGCCCGCGCGAAGGAGGCGGCAGCGGCAGCGGCGGCAGCACGTGCGGC
GGCGGCAGCGAAAGCTGCGGCGGCGGCAGCGGCAGCTGTGAGGGCGGCAG
CGGCAGATGCAGCGGCGGCAGCGGCAGGTGTGGCGGCGGCAACGGCAGAT
GCGGCGGCGGCAGCGGTGGCCACAGCGAAGGTGGTGGCGGTGACAGCGGC
GGCATCGGCGGCAAAGACAGCAGCACTCCAAGCGGCGGAAGCTCTTGCGG
GCAAGGAGGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1528:17263..22573-

>mRNA_E-siliculosus-1a_F_contig1528.3055.1 ID=mRNA_E-siliculosus-1a_F_contig1528.3055.1|Name=mRNA_E-siliculosus-1a_F_contig1528.3055.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1362bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1528:17263..22573- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGGGCAGCGATGGCAAGGGGGCATCTCCCGTACCTCCTTCTGATGA
CGGACATCAACAGAGGCAAGTTTCAGCATGCGGGGCAGCGATGGCAAGGG
GGCATCTCCCGTACCTCCTTCTGATGACGGACATCAACAGAGGCAAGTTT
CAGCTGACGGATTGGGCGGATGGGTGATGCCCGAGGCCGGTCCAGACGGG
GAGGCCAAGTTCAAGATGGTCGGCCCAACTGGGAATTGCTACGGGCATTC
CATAGCCAGTGACGGATTGGGCGGATGGGTGATGCCCGAGGCCGGTCCAG
ACGGGGAGGCCAAGTTCAAGATGGTCGGCCCAACTGGGAATTGCTACGGG
CATTCCATAGCCAGCCCCTTGCGCATCGTATGCAACTCGCTAGATCGGGG
CGCATACCGCTTCGGTTTACACCCTCGAAGCGAAGGGCGCCCCTTGCGCA
TCGTATGCAACTCGCTAGATCGGGGCGCATACCGCTTCGGTTTACACCCT
CGAAGCGAAGGGCGACGGCCACCGTTCAAACACGTTGCGCACAAGCGAGG
ACGGGACGCCGATGCCTCCGACGAAGCCCCAGCCGCCAAGAGGTGTCGGT
GTCCGAAGTTGTCCGAGGAAGAGGTCATTGCCATACTTTCCCAGGGGCTG
GCAGAGCTGGAAAAAGCCGAACACGAGGCAGCCCGCGCGAAGGAGGCGGC
AGCGGCAGCGGCGGCAGCACGTGCGGCGGCGGCAGCGAAAGCTGCGGCGG
CGGCAGCGGCAGCTGTGAGGGCGGCAGCGGCAGATGCAGCGGCGGCAGCG
GCAGGTGTGGCGGCGGCAACGGCAGATGCGGCGGCGGCAGCGGTGGCCAC
AGCGAAGGTGGTGGCGGTGACAGCGGCGGCATCGGCGGCAAAGACAGCAG
CACTCCAAGCGGCGGAAGCTCTTGCGGGCAAGGAGGCTACGGCCACCGTT
CAAACACGTTGCGCACAAGCGAGGACGGGACGCCGATGCCTCCGACGAAG
CCCCAGCCGCCAAGAGGTGTCGGTGTCCGAAGTTGTCCGAGGAAGAGGTC
ATTGCCATACTTTCCCAGGGGCTGGCAGAGCTGGAAAAAGCCGAACACGA
GGCAGCCCGCGCGAAGGAGGCGGCAGCGGCAGCGGCGGCAGCACGTGCGG
CGGCGGCAGCGAAAGCTGCGGCGGCGGCAGCGGCAGCTGTGAGGGCGGCA
GCGGCAGATGCAGCGGCGGCAGCGGCAGGTGTGGCGGCGGCAACGGCAGA
TGCGGCGGCGGCAGCGGTGGCCACAGCGAAGGTGGTGGCGGTGACAGCGG
CGGCATCGGCGGCAAAGACAGCAGCACTCCAAGCGGCGGAAGCTCTTGCG
GGCAAGGAGGCT
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