mRNA_E-siliculosus-1a_F_contig1528.3053.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1528.3053.1
Unique NamemRNA_E-siliculosus-1a_F_contig1528.3053.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1528.3053.1 vs. uniprot
Match: A0A6H5KB80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB80_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.000e-22
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 EIGASVVEAVGVVAIFWVLSNFTSYQDNSYQ-DTAVVLEGLALFAVACAVLGLLAEVLAGYGKL 189
            EIGASVVEAVGVVAIFWVLS+FTSY+DNS   D+A+VLEGLALFAVACAVLGLLA VLAGYG L
Sbjct:  196 EIGASVVEAVGVVAIFWVLSSFTSYRDNSNNHDSALVLEGLALFAVACAVLGLLAVVLAGYGGL 259
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1528.3053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB80_9PHAE5.000e-2285.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1528contigE-siliculosus-1a_F_contig1528:5115..5829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size363
Model size705
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1528.3053.1prot_E-siliculosus-1a_F_contig1528.3053.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1528 5334..5706 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928037.621889-UTR-E-siliculosus-1a_F_contig1528:5114..53331622928037.621889-UTR-E-siliculosus-1a_F_contig1528:5114..5333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1528 5115..5333 +
1696318782.525551-UTR-E-siliculosus-1a_F_contig1528:5114..53331696318782.525551-UTR-E-siliculosus-1a_F_contig1528:5114..5333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1528 5115..5333 +
1622928037.6651828-UTR-E-siliculosus-1a_F_contig1528:5706..58291622928037.6651828-UTR-E-siliculosus-1a_F_contig1528:5706..5829Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1528 5707..5829 +
1696318782.5515985-UTR-E-siliculosus-1a_F_contig1528:5706..58291696318782.5515985-UTR-E-siliculosus-1a_F_contig1528:5706..5829Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1528 5707..5829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928037.6376002-CDS-E-siliculosus-1a_F_contig1528:5333..55461622928037.6376002-CDS-E-siliculosus-1a_F_contig1528:5333..5546Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 5334..5546 +
1696318782.5328815-CDS-E-siliculosus-1a_F_contig1528:5333..55461696318782.5328815-CDS-E-siliculosus-1a_F_contig1528:5333..5546Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 5334..5546 +
1622928037.6493707-CDS-E-siliculosus-1a_F_contig1528:5556..57061622928037.6493707-CDS-E-siliculosus-1a_F_contig1528:5556..5706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 5557..5706 +
1696318782.5433035-CDS-E-siliculosus-1a_F_contig1528:5556..57061696318782.5433035-CDS-E-siliculosus-1a_F_contig1528:5556..5706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1528 5557..5706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1528.3053.1

>prot_E-siliculosus-1a_F_contig1528.3053.1 ID=prot_E-siliculosus-1a_F_contig1528.3053.1|Name=mRNA_E-siliculosus-1a_F_contig1528.3053.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=121bp
MLPQRDRSSKPVVQCLGEFGSATIWLGSGLLEVVVTIWLVWRGEGIIRSH
SSSSYADSGEGDLSATLSSQVSSPCWLNGPQNISGLPKRFECKWTKLKGP
YQFQADHFEDSAVLNDDIGC*
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mRNA from alignment at E-siliculosus-1a_F_contig1528:5115..5829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1528.3053.1 ID=mRNA_E-siliculosus-1a_F_contig1528.3053.1|Name=mRNA_E-siliculosus-1a_F_contig1528.3053.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=715bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1528:5115..5829+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGATTGGTGCGTCAGTTGTCGAGGCCGTTGGAGTAGTGGCAATTTTCTG
GGTGCTGTCAAACTTCACCAGCTATCAAGACAACAGCTATCAAGACACCG
CTGTGGTCTTAGAAGGGCTTGCGCTGTTTGCCGTGGCTTGTGCAGTCTTG
GGCCTTCTTGCCGAGGTACTTGCGGGGTATGGTAAGCTCAAGCCTGGTGA
AATCAAAGTCTTCGGTCATATGCTTCCCCAACGCGACAGATCCAGCAAAC
CCGTTGTTCAGTGCTTGGGAGAGTTCGGCAGTGCAACAATATGGTTGGGT
TCCGGCTTGTTGGAAGTGGTCGTCACAATTTGGCTAGTCTGGAGAGGGGA
AGGAATAATCCGCTCGCACTCCTCCTCTTCGTACGCGGACTCTGGGGAGG
GTGACTTGAGCGCCACATTGTCATCTCAGGTCGCCTTGGAAGTCCTCGCC
CTGTTGGCTCAATGGGCCGCAAAATATTTCTGGGCTACCAAAAAGGTTCG
AATGCAAGTGGACCAAGTTGAAGGGCCCATACCAATTCCAGGCGGATCAT
TTTGAGGACTCAGCAGTCCTTAACGATGATATCGGGTGTTGATTGCTATA
CACTTGCTGCGTCGTTTGGGCCGGTACAATTTCTCAAAGATCACGTGATC
AGTTGGATTCATTGCGTGTGTCCTACTTGTAGACACCGAATCTCATAACG
CCGTCTTCTTTGTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1528:5115..5829+

>mRNA_E-siliculosus-1a_F_contig1528.3053.1 ID=mRNA_E-siliculosus-1a_F_contig1528.3053.1|Name=mRNA_E-siliculosus-1a_F_contig1528.3053.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1528:5115..5829+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTCCCCAACGCGACAGATCCAGCAAACCCGTTGTTCAGTGCTTGGG
AGAGTTCGGCAGTGCAACAATATGGTTGGGTTCCGGCTTGTTGGAAGTGG
TCGTCACAATTTGGCTAGTCTGGAGAGGGGAAGGAATAATCCGCTCGCAC
TCCTCCTCTTCGTACGCGGACTCTGGGGAGGGTGACTTGAGCGCCACATT
GTCATCTCAGGTCATGCTTCCCCAACGCGACAGATCCAGCAAACCCGTTG
TTCAGTGCTTGGGAGAGTTCGGCAGTGCAACAATATGGTTGGGTTCCGGC
TTGTTGGAAGTGGTCGTCACAATTTGGCTAGTCTGGAGAGGGGAAGGAAT
AATCCGCTCGCACTCCTCCTCTTCGTACGCGGACTCTGGGGAGGGTGACT
TGAGCGCCACATTGTCATCTCAGGTCTCCTCGCCCTGTTGGCTCAATGGG
CCGCAAAATATTTCTGGGCTACCAAAAAGGTTCGAATGCAAGTGGACCAA
GTTGAAGGGCCCATACCAATTCCAGGCGGATCATTTTGAGGACTCAGCAG
TCCTTAACGATGATATCGGGTGTTGATCCTCGCCCTGTTGGCTCAATGGG
CCGCAAAATATTTCTGGGCTACCAAAAAGGTTCGAATGCAAGTGGACCAA
GTTGAAGGGCCCATACCAATTCCAGGCGGATCATTTTGAGGACTCAGCAG
TCCTTAACGATGATATCGGGTGTTGA
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