mRNA_E-siliculosus-1a_F_contig1527.3049.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1527.3049.1 vs. uniprot
Match: A0A6H5L6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6L5_9PHAE) HSP 1 Score: 854 bits (2207), Expect = 6.540e-291 Identity = 856/973 (87.98%), Postives = 870/973 (89.41%), Query Frame = 1
Query: 1 MSRFIKYASNLLDGVDSIAKDSLTDQDIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGIAAELSEGDLSADSSQLGTPGARGHVARARTSSGVGSAGAGPYASSAGTPRRYGXXXXXXXXXXXADELXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAGTGFSPGPRSRTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LLREATGLAASGGGAPGKEDGSVWSDKGTVSSAAPSPLGRGGHGVSYGDDRDNDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVKASASRVGVTLFPGTTPPGHRXXXXXXXXXXXXXXXXGDVDAGSAPXXXXXXXXXXXXXXXXXXXXXXRERRGFGGLLGMGGRNKGSSGRGDRDGDEEALRAEAXXXXXXXXXXXXXXXDAEDRLRGQEAELKTGAEKLKRQKAAAAEXXXXXXXXMEEFRVLQLEEKKVFLNNLEATEQKLKEKERDADEARAALSALEALAMEREDAATRLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVEARHRAWMRQAQARQTELEATAAQLAAALAEANRKKHQPGAEEGGGEGQGXXXXXGVHSGARTSDREFRALADELDSCQASLELEQERTRSLQQEVGLLKHDLDSARATEAVVERQRQEHAKMAADSFGKYCTTKASRLEQQLQQERASAKRLEASVPTPAGPEAQIQALSSKLLDKQARLEESVTERTTLAAKLREASDRAFRAEQELRESRGETLEAGGXXXXXXXXXXXXXXXXXXVGVMRARRGRQGRGSPTTGTWSRLGPIAKHKKIASAVDVLDRQTLKTVVFLRNSSVARAAFLAYLLLLHLWAFALVALHSSTLNHIKHPAEHSGNVNHGH 2916
MSRFIKYASNLLDGVDSIAKDSLTDQDIAAXXXXXXXXXXXXXXXXXXXXXXXXX +GIAAE SEGDLSADSSQLGTPGARG VARARTSSGVGSAGAGPYASSAGTPRRYGXXXXXXXXXXX XXXXXX XXXXXXXXXXXXXXXXXX LT GTGFSPGPRSRTT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LL EATGLAA GG APGKEDGSVWSDKGTVSSAAPSPLGRGGHGVSYGD+RDNDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASVK SASRVGVT FPGTTPPGHR XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX RERRG GGLLGMG NKG++GRG RD DEEALRAEA XXXXXXXX DAEDR QEAELKTGAEKLKRQKAAAA XXXXXXXXMEEFRVLQLEEKKVFLNNLEA E+KLK+KER+ADEARAALS +E AMERE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE+EARHR WMRQAQARQTELEATAAQLAAALAEANRKKHQPGAEE GGEG+G G H GARTSDREFRALADELDSCQASLELEQERTRSLQQEVGLLKHDLDSARATEAVVERQRQEHAKMAADSFGK +KASRLEQQLQQERASAKRLEASVPTPAGPEAQIQALSSKLL+KQARLEESVTERTTL AKLREASDRAFRAEQELRESRGETLEAGGXXXXXXXXXXXX VGVMRARRGRQGR SPT GTWSR GPIAKHKKIASAVDVLDRQTLKTVVFLRNSSVARAAFLAYLLLLHLW FA+V LHSSTLNHIKHPAEHSGNV+HGH
Sbjct: 1 MSRFIKYASNLLDGVDSIAKDSLTDQDIAAXXXXXXXXXXXXXXXXXXXXXXXXXG--------IGIAAEPSEGDLSADSSQLGTPGARGRVARARTSSGVGSAGAGPYASSAGTPRRYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPPS------LTTGTGFSPGPRSRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLLGEATGLAAGGGAAPGKEDGSVWSDKGTVSSAAPSPLGRGGHGVSYGDERDNDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRG-ASVKPSASRVGVTPFPGTTPPGHRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRERRGLGGLLGMGRGNKGAAGRGSRDDDEEALRAEAEDXXXXXXXXSLELEDAEDRXXXQEAELKTGAEKLKRQKAAAAXXXXXXXXXMEEFRVLQLEEKKVFLNNLEAAERKLKKKEREADEARAALSVVEVFAMEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEARHRVWMRQAQARQTELEATAAQLAAALAEANRKKHQPGAEESGGEGEGARRGDGAHGGARTSDREFRALADELDSCQASLELEQERTRSLQQEVGLLKHDLDSARATEAVVERQRQEHAKMAADSFGK--CSKASRLEQQLQQERASAKRLEASVPTPAGPEAQIQALSSKLLEKQARLEESVTERTTLTAKLREASDRAFRAEQELRESRGETLEAGGXXXXXXXXXXXX------VGVMRARRGRQGRSSPTAGTWSRFGPIAKHKKIASAVDVLDRQTLKTVVFLRNSSVARAAFLAYLLLLHLWTFAVVGLHSSTLNHIKHPAEHSGNVDHGH 950
BLAST of mRNA_E-siliculosus-1a_F_contig1527.3049.1 vs. uniprot
Match: D8LSA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA0_ECTSI) HSP 1 Score: 744 bits (1920), Expect = 1.690e-248 Identity = 768/912 (84.21%), Postives = 778/912 (85.31%), Query Frame = 1
Query: 193 VGIAAELSEGDLSADSSQLGTPGARGHVARARTSSGVGSAGAGPYASSAGTPRRYGXXXXXXXXXXXADELXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAGTGFSPGPRSRTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLREATGLAASGGG-APGKEDGSVWSDKGTVSSAAPSPLGRGG-HGVSYGDDRDND-VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVKASASRVGVTLFPGTTPPGHRXXXXXXXXXXXXXXXXGDVDAGSAPXXXXXXXXXXXXXXXXXXXXXX-RERRGFGGLLGMGGRNKGSSGRGDRDGDEEALRAEAXXXXXXXXXXXXXXXDAEDRLRGQEAELKTGAEKLKRQKAAAAEXXXXXXXXMEEFRVLQLEEKKVFLNNLEATEQKLKEKERDADEARAALSALEALAMEREDAATRLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVEARHRAWMRQAQARQTELEATAAQLAAALAEANRKKHQPGAEEGGGEGQGXXXXXGVHSGARTSDREFRALADELDSCQASLELEQERTRSLQQEVGLLKHDLDSARATEAVVERQRQEHAKMAADSFGKYCTTKASRLEQQLQQERASAKRLEASVPTPAGPEAQIQALSSKLLDKQARLEESVTERTTLAAKLREASDRAFRAEQELRESRGETLEAGGXXXXXXXXXXXXXXXXXXVGVMRARRGRQGRGSPTTGTWSRLGPIAKHKKIASAVDVLDRQTLKTVVFLRNSSVARAAFLAYLLLLHLWAFALVALHSSTLNHIKHPAEHSGNVNHGH 2916
+GIAAE SEGDLSADSSQLGTP ARG VARAR SSGVGSAGAGPYASSAGTPRRYG XXXXXXXXXX XXXXXX XXXXXXXXXXXXXXXX LT GTGFSPGPRSRT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APGKEDGSVWSDKGTVSSAAPSPLGRGG HGVSYGD+RDND VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASVKASASRVGVTLFPGTTPPGHR XXXXXXX GDVDAGS P XXXXXXXXXXXXXX RERRG GGLLGMG NKG++GRG+RDGDEEALRAEA XXXXXXXXXXXX DAEDR KTGAE+LKRQK AAAE ME+FRVLQLEEKKVFLNNLEA EQKL+EKERDADEARAALSALEALAMERED XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVEARHRAWMRQAQARQTELEATAAQLAAA NRKKHQ XXXXX RTSDREFRALADELDSCQASLELEQERTRSL+QEV LLKHDLDSARATEAVVERQRQEHAKMAADSF K ASRLEQQLQQERASAKRLEASVPTPAGPEAQIQALSSKLLDKQARLEESVTERTTLAAKLREASDRAFRAEQELRESRGETLEAGGXXXXXXXXXXXXX VGVMRARRGRQGRGSPT GTWSRLGPIAKHKKIASAVDVLDRQTLK VVFLRNSSVARAAFLAYLLLLHL AFALV LHSSTLN IKHPAEHSGN+NHGH
Sbjct: 20 IGIAAEPSEGDLSADSSQLGTPRARGRVARARASSGVGSAGAGPYASSAGTPRRYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEPPS--------LTVGTGFSPGPRSRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGKEDGSVWSDKGTVSSAAPSPLGRGGGHGVSYGDNRDNDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ASVKASASRVGVTLFPGTTPPGHRHXXXXXXXLPHRRQESGDVDAGSVPSPPDAGYSXXXXXXXXXXXXXXGRERRGLGGLLGMGRGNKGAAGRGNRDGDEEALRAEAEDXXXXXXXXXXXXEDAEDRXXXXXXXXKTGAEQLKRQKVAAAERQRTMEAEMEQFRVLQLEEKKVFLNNLEAAEQKLQEKERDADEARAALSALEALAMEREDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVEARHRAWMRQAQARQTELEATAAQLAAAXXXXNRKKHQXXXXXXXXXXXXXXXXXXXXXXVRTSDREFRALADELDSCQASLELEQERTRSLKQEVDLLKHDLDSARATEAVVERQRQEHAKMAADSFAK-----ASRLEQQLQQERASAKRLEASVPTPAGPEAQIQALSSKLLDKQARLEESVTERTTLAAKLREASDRAFRAEQELRESRGETLEAGGXXXXXXXXXXXXX-----VGVMRARRGRQGRGSPTAGTWSRLGPIAKHKKIASAVDVLDRQTLKIVVFLRNSSVARAAFLAYLLLLHLSAFALVGLHSSTLNPIKHPAEHSGNINHGH 911
BLAST of mRNA_E-siliculosus-1a_F_contig1527.3049.1 vs. uniprot
Match: A0A7R9U461_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U461_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 2.540e-9 Identity = 103/325 (31.69%), Postives = 153/325 (47.08%), Query Frame = 1
Query: 1894 EVEARHRAWMRQAQARQTELEATAAQLAAALAEANRKKHQPGAEEGGGEGQGXXXXXGVHSGARTSD-REFRALADELDSCQASLELEQERTRS-LQQEVGLLKHDLDSARATEAVVERQRQEHAKMAADSFGKYCTTKASRLEQQLQ-QERASAK-RLEASVPTPAGPEAQIQALSSKLLDKQARLEESVTERTTLAAKLREASDRAFRAEQELRESRGETLEAGGXXXXXXXXXXXXXXXXXXVGVMRARRGRQGRGSPTTGTWSRLGPIAKHKKIASAVDVLDRQTLKTVVFLRNSSVARAAFLAYLLLLHLWAFALVALHS 2856
E+EA+H + MR + R+ ELE T +L LA+ K+ A G G+ S R AL E C+ L E E+ R+ L Q+ LL+ L S T A + R+ + +K+ + T K+ LE QL+ Q RASA+ R +A E +I+A++ +L+ KQ L+E+ E+ L A+L A+ R + E ++++ A G G +R RR T L P+ K + ++ AVD LDR L T LR ++VARA FLAYL +LHLW F L+A H+
Sbjct: 328 EMEAQHSSAMRTLRRREAELERTNTELTRTLAD---KERAISALRGSGQDDFSGGLPDADSLLREEAIAASTALRSERQKCE-ELGAELEKARADLFQQTTLLEEQLSS---TTAALRREEAQRSKLEGLLSERDGTLKS--LEGQLRDQGRASARGRXDARGEVV---EERIKAMTEQLMKKQLALDEANCEKAALRARLGAAATRITKLEGDVQKYMSTAASAYGDDEDVEE------------GGLRRRR------KAHTSISVLLKPVTKSEGVSKAVDSLDRFVLYTGRVLRANAVARAVFLAYLFMLHLWTFTLIAFHT 622
BLAST of mRNA_E-siliculosus-1a_F_contig1527.3049.1 vs. uniprot
Match: A0A7S4MPT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MPT6_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.880e-7 Identity = 94/365 (25.75%), Postives = 160/365 (43.84%), Query Frame = 1
Query: 1909 HRAWMRQAQARQTELEATAAQLAAALAEANRKKHQPGAEEGGGEGQGXXXXXGVHS-GARTSDREF------RALADELDSCQASLELEQERTRSLQQEVGLLKHDLDSARATE-AVVERQRQEHAKMAADSFGKYCTTKASRLEQQLQQERASAKRLEASVPTPAGPEA-------------QIQALSSKLLDKQARLEESVTERTTLAAKLREASDRAFRAEQELRESR---GETLEAGGXXXXXXXXXXXXXXXXXXVGVMRARRGRQGRGSPTTGTWSRL-------GPIAKHKKIASAVDVLDRQTLKTVVFLRNSSVARAAFLAYLLLLHLWAFALVALHSSTLNHIKHPAEHSGNVNH 2910
H + Q QAR+ ELE T +L AAL A +++ G + G+ + G R +E A +E ++ +A L LE + +LQ+E+ D+ R+ E + V+ +++ + AD K + ++ E + + ++ S +G + Q+ AL+ +++ QAR E S E +TL +LR A RA AE+ L ES G + +G R+R G +G G+ + + G AK ++I +AVD +DR + T FLR + +ARA F+ YL++LH+W F ++ H+ T SG++ H
Sbjct: 503 HARQIGQRQAREAELERTVTELGAALVAAKKRELSRGQQR-------LSSFKGISAEGDRDGSQELSLKQRLEAAEEEAETAKAQLVLELRQRETLQEEL----RDISRERSEEVSAVQARQKRQDRTIADLTANVARLKTALRDRSGGDEDSGDEGVKGSPRAASGEGSRSSSSSEKAELRRQVSALTKQVMQHQARSENSTVEISTLRNRLRSALTRAETAEKALAESANFGGGSPLSGDFDVEKGLGGSVRRRGASGKKASRSRHGAKGSGASSANSIRSALMLDPGRGGEAK-EQIGTAVDAVDRAAIDTGSFLRYNPLARAGFMLYLVVLHMWTFCVLVFHAHTYE------PESGDIGH 849
BLAST of mRNA_E-siliculosus-1a_F_contig1527.3049.1 vs. uniprot
Match: A0A7S0Y6S8_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y6S8_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 4.520e-6 Identity = 91/349 (26.07%), Postives = 148/349 (42.41%), Query Frame = 1
Query: 1894 EVEARHRAWMRQAQARQTELEATAAQLAAALAEANRKKHQPGAEEGGGEGQGXXXXXGVHSGARTSDRE-FRALADELDSCQASLELEQERTRSLQQEVGLLKHDLDSARATEAVVERQRQE-HAKMAADSFGKYCTTKASRLEQQLQQERASAKRLEA-SVPTPAGPEAQIQA-------LSSKLLDKQARLEESVTERTTLAAKLREASDRAFRAEQELRESRGET---------LEAGGXXXXXXXXXXXXXXXXXXVGVMRARRGR----QGRGSPTTGTWSRLGPIAKHKKIASAVDVLDRQTLKTVVFLRNSSVARAAFLAYLLLLHLWAFALVALHSSTLNH 2871
E A H M Q Q R+ ELE T ++ +AL A ++ Q GG T+ +E F +A+EL++ Q L +E +R +LQQE+ ++ R E + + RQ+ H + D + S + Q +RA+ + + T A P ++ A LS +L +Q + + +E L +L+ A+ RA AE+ +S+ + +E GG GV R GRG+ G A +++A VD +D + T F+R+ AR L YL++LHLW+FALV H++ + H
Sbjct: 365 EAAAMHAKQMAQRQRREAELEQTILEMGSALTLAKQQLQQQSLSSPGGNAGAVPTASNHQKIDGTNYKEQFEQVAEELENIQVRLTMETQRREALQQELS----EVSKERKQELSLSQGRQQQHDRKVTDLESTIHRLQDSIRASKQQSDRATDDSFDLQATDTQAIPSQELDAAKQEISKLSDQLYRQQVLAKNAKSEVLALKGRLQAANARADEAEKAQYDSKYSSQPRSRGSYDVEGGGASNSAPAFTARRRVKGGSRGVRSIRSALPCIGSGRGTDQNG--------AAMEQVALTVDAIDSWMVDTGSFMRHEPFARLGLLLYLMILHLWSFALVVFHTTEVEH 701 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1527.3049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1527.3049.1 >prot_E-siliculosus-1a_F_contig1527.3049.1 ID=prot_E-siliculosus-1a_F_contig1527.3049.1|Name=mRNA_E-siliculosus-1a_F_contig1527.3049.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=973bp MSRFIKYASNLLDGVDSIAKDSLTDQDIAAAAAAERRRRRKQLKRDRFSKback to top mRNA from alignment at E-siliculosus-1a_F_contig1527:4000..15929- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1527.3049.1 ID=mRNA_E-siliculosus-1a_F_contig1527.3049.1|Name=mRNA_E-siliculosus-1a_F_contig1527.3049.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11930bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1527:4000..15929- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1527:4000..15929- >mRNA_E-siliculosus-1a_F_contig1527.3049.1 ID=mRNA_E-siliculosus-1a_F_contig1527.3049.1|Name=mRNA_E-siliculosus-1a_F_contig1527.3049.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5838bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1527:4000..15929- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |