mRNA_E-siliculosus-1a_F_contig1525.3042.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1525.3042.1
Unique NamemRNA_E-siliculosus-1a_F_contig1525.3042.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: A0A6H5KTF8_9PHAE (Dus domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF8_9PHAE)

HSP 1 Score: 782 bits (2019), Expect = 4.370e-277
Identity = 394/404 (97.52%), Postives = 400/404 (99.01%), Query Frame = 3 
Query:   48 MNVEDAADQLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGGAPGMREVTPAKTLEQLARLWDVGADFDAETVRRRKRAEQLGEASSIEQAERGTVHKFDDAYFLGTEEARTDNGVGGKARDSSDAPDPYAARG 1259
            MNVEDA DQL+RGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQ+GTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVG LRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAV+IPVIANGD+YTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGGAPGMREVTPAKTLEQLARLWDVGADFDAETVRRRKRAE+LGEA+SIEQAERGTVHKFDDAYFLGTEEARTDN VGGKARDSSDAPDP AARG
Sbjct:    1 MNVEDAVDQLYRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQIGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGILRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVDIPVIANGDVYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGGAPGMREVTPAKTLEQLARLWDVGADFDAETVRRRKRAEELGEATSIEQAERGTVHKFDDAYFLGTEEARTDNAVGGKARDSSDAPDPNAARG 404
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: D8LPM6_ECTSI (Dus domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM6_ECTSI)

HSP 1 Score: 718 bits (1854), Expect = 1.240e-251
Identity = 361/369 (97.83%), Postives = 366/369 (99.19%), Query Frame = 3 
Query:   48 MNVEDAADQLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGGAPGMREVTPAKTLEQLARLWDVGADFDAETVRRRKRAEQLGEASSIEQAERGTVHKF 1154
            MNVEDAADQL+RGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQ+GTGDATNALRAAQHVERDVAAVDINMGCPK+FSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGD+YTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGGAPGMREVTPAKTL QLARLWDVGADFDAETVRRRKRAEQLGEA+SIEQAERGTVH  
Sbjct:    1 MNVEDAADQLYRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQIGTGDATNALRAAQHVERDVAAVDINMGCPKRFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDVYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGGAPGMREVTPAKTLGQLARLWDVGADFDAETVRRRKRAEQLGEATSIEQAERGTVHNL 369
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: H3GYM5_PHYRM (U1-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GYM5_PHYRM)

HSP 1 Score: 318 bits (814), Expect = 1.870e-96
Identity = 165/332 (49.70%), Postives = 235/332 (70.78%), Query Frame = 3 
Query:   72 QLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGG-APGMREVTPAKTLE-----QLARLWDV 1049
            +L+  KV L+PMVR+GTLP R L+LRYGAD V+ EE++D+R+++AVR +N V+ +VD+V + G   +   F+TCP  E G++V+Q+GT DA  AL+AA+ V RDVAAVDINMGCPK FS+QGGMGAALL++P+VA DI+ TLRRNL++PVS KIRLL    +T++ ARR+E AGA A+ VH+R++ + P  KA WE+L PVV A+++PV+ANGD++   D+  ++ +SG SS ++AR AL N SIF+ +G  LP+ +V++ YL+     D+VYQN KY VM M+     P  L+++ + G   G A G R VT  +        Q+  LWD+
Sbjct:    3 ELYENKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIVDKRIISAVRMKNEVINSVDFVSRNGDSVV---FRTCPE-EAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGAALLRKPEVACDIIKTLRRNLNIPVSCKIRLLPEIQDTIDTARRLEDAGAYAVGVHMRQIHERPHDKASWEKLAPVVSALSVPVLANGDVFLHEDIDKLRKISGASSFLIARGALTNPSIFRKEGR-LPIDQVVRDYLQAAAEVDNVYQNTKYNVMRMI-----PSSLEDAYASGNNCGYAKGARVVTVPELAATRNGLQMYSLWDL 324
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: G5AD05_PHYSP (U1-type domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AD05_PHYSP)

HSP 1 Score: 317 bits (813), Expect = 2.780e-96
Identity = 163/332 (49.10%), Postives = 233/332 (70.18%), Query Frame = 3 
Query:   72 QLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGG-APGMREVTPAKTLE-----QLARLWDV 1049
            +L+  KV L+PMVR+GTLP R L+LRYGAD V+ EE++D+R+++AVR  N V+  VD+V + G   +   F+TCP  E G++V+Q+GT DA  AL+AA+ V RDVAAVDINMGCPK FS+QGGMGAALL++P+VA DI+ TLRRNL++PVS KIRLL    +T++ A+R+E AGACA+ VH+R++ + P +KA W+ L PVV A+++PV+ANGD++   D+  ++ +SG SS ++AR AL N SIF+ +G  LP+ +V++ YL+     D+VYQN KY VM M+     P  L+++ + G   G A G   VT  +        Q+  LWD+
Sbjct:    3 ELYENKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIVDKRIISAVRVPNDVVNAVDFVSRNGDSVV---FRTCPE-EAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGAALLRKPEVACDIIKTLRRNLNIPVSCKIRLLPEIQDTIDTAKRLEDAGACAVGVHLRQIHERPHNKASWDRLAPVVSALSVPVLANGDVFEHEDIDKLRKISGASSFLIARGALANPSIFRKEGR-LPIDQVVKDYLKAAAETDNVYQNTKYNVMRMI-----PSSLEDAFASGNKYGYAKGAHVVTVPELAAMRNGLQMYSLWDL 324
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: A0A3R7JYU6_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JYU6_9STRA)

HSP 1 Score: 316 bits (809), Expect = 1.140e-95
Identity = 170/371 (45.82%), Postives = 242/371 (65.23%), Query Frame = 3 
Query:   72 QLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGGAPGMREVTPAKTLE------QLARLWDVGADFDAETVRRRKRAEQLGEASSIEQAERGTVHKFDDAY 1166
            +L+  KV L+PMVR+GTLP R L+LRYGAD V+ EE++D+R+++AVR  N VL TVD+V + G   +   F+TCP  E G++V+Q+GT DA  AL+AA+ V RDVAAVDINMGCPK FS+QGGMGAALL++P+VA DI+ TLRRNL++PVS KIRLL    +T++ ARR++ AGA A+ VH+R++ + P  KA WE L PVV A+++PV+ANGD++   D+  ++ +SG SS ++AR AL N SIF+ +G+ LP+ +V Q YL+     D+VYQN KY  M M+     P  L+++ +     G      +     L       Q+ +LW++   ++    R R +A  LG  S  E     T+    D Y
Sbjct:    3 ELYENKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIVDKRIISAVRVPNAVLDTVDFVSRNGDSVV---FRTCPE-ETGKVVFQIGTADAVLALKAAEQVARDVAAVDINMGCPKHFSVQGGMGAALLRKPEVACDIIKTLRRNLNIPVSCKIRLLSETQDTIDTARRLQDAGAYAVGVHMRQIHERPHDKASWEALAPVVSALSVPVLANGDVFEYNDIDKLRQISGASSFLIARGALANPSIFRKEGY-LPIDQVTQDYLKVSAEVDNVYQNTKYNAMRMI-----PSSLEDARASSNKYGFTDTSRIVTVPELAATRSGLQMFQLWNLQNFYEQYQDRFRAKAAALGTQSKKEDQVLTTLPTAHDRY 363
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: A0A8K1FAM1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FAM1_PYTOL)

HSP 1 Score: 313 bits (803), Expect = 1.310e-95
Identity = 163/367 (44.41%), Postives = 234/367 (63.76%), Query Frame = 3 
Query:   72 QLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGGAPGMREVTPAKTLEQLARLWDVGADFDAETVRRRKRAEQLGEASSIEQAERGTVHKFDDAYFL 1172
            +L+R  V LAPMVRAGTLP R L+LRYGAD V+ EE+ID+R++   R EN VL TVDYV K G   +   F+TC A E+G++V+Q+GT D   AL+AA+HV +DVA++DINMGCPK FS+QGGMG AL+K+P VA DIV TL RNL++PVS KIR+ E    T++FA+ +E AGA A+ VH R+  + P   A W+ L PVV A+++P++ NGD++ R D+  I+ +SG SS ++AR AL N SIF+ +G +LP  +V+  YL+     D+V+QN KY +  ML  +     +   +++   G           K  +Q+  LW++    +    R R RA +L E +  +  +    H +DD + L
Sbjct:    3 ELYRNAVCLAPMVRAGTLPLRLLSLRYGADLVYGEEIIDKRIIATTRVENAVLNTVDYVSKNGDSVV---FRTC-AEEKGKVVFQIGTADPILALKAAEHVAQDVASIDINMGCPKHFSIQGGMGVALMKKPDVACDIVKTLSRNLNIPVSAKIRIFEDSQATIDFAKALENAGAVAVGVHGRRADERPVDDAHWDALAPVVSALSVPILVNGDIFNREDLEKIRTISGASSFLIARGALSNASIFRKEG-MLPYTDVVVDYLKVAAETDNVFQNTKYNLSRMLPSKCDDKSVSAPVTVAQLGAT---------KDNKQMFSLWNLQDHLEEYQERFRARAAELQELAPPQPQQ--PAHAYDDEHVL 353
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: A0A0P1AUH8_PLAHL (Trna-dihydrouridine synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUH8_PLAHL)

HSP 1 Score: 313 bits (803), Expect = 3.410e-95
Identity = 156/327 (47.71%), Postives = 226/327 (69.11%), Query Frame = 3 
Query:   72 QLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKES-ISLGLPGGAPGMREVTPAKTLEQLARLWDV 1049
            +L+  KV L+PMVR+GTLP R L+LRYGAD V+ EE+ID+R+++++R  N V+  VD+V + G   +   F+TC + E  ++V+Q+GT DA  AL+AA+ V RDV AVDINMGCPK FS+QGGMGAALLK+P+VA DI+ +LRRNL++PVS KIRLL    +T++ A+R+E AGACA+ VH+R+V + P  KA W+ L P+V A+++PV+ANGD++   DM  ++A+SG SS ++AR AL N SIF+ +G  LP+ +V+++YL      D+V+QN KY VM M+       +  E+    G       + E+   K   Q+  LWD+
Sbjct:    3 ELYENKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIIDKRIISSIRVPNEVVNAVDFVSRNGDSVV---FRTC-SEESKKIVFQIGTADAVLALKAAEMVARDVVAVDINMGCPKHFSIQGGMGAALLKKPEVACDIMKSLRRNLNIPVSCKIRLLSETQDTIDLAKRLEHAGACAIGVHMRQVHERPRDKASWDRLAPIVSALSVPVLANGDVFAYEDMKKLRAISGVSSFLIARGALANASIFRENGR-LPVDQVVREYLMAAAEVDNVFQNTKYNVMRMIPNSHADAYASENNYGYGKNARVVTVSELAATKNPLQMYSLWDL 324
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: D0P0N4_PHYIT (tRNA-dihydrouridine synthase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P0N4_PHYIT)

HSP 1 Score: 313 bits (803), Expect = 3.950e-95
Identity = 167/357 (46.78%), Postives = 240/357 (67.23%), Query Frame = 3 
Query:   72 QLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGGAPGMREVTPAKTLE------QLARLWDVGADFDAETVRRRKRAEQLGEASSIE 1124
            +L+  KV L+PMVR+GTLP R L+LRYGAD V+ EE+ID+R+++AVR  N V+  VD+V + G   +   F+TC + E G++V+Q+GT DA  AL+AA+ V RDVAAVDINMGCPK FS+QGGMGAALL++P+VA DI+ TLRRNL++PVS KIRLL    +TV+ ARR+E AGACA+ VH+R+  + P  KA W+ L PVV A+++PV+ANGD++   D+  ++ LSG SS ++AR AL N SIF+ +G  LP+ +V+++YL+     D+V+QN KY VM M+     P  L+++ + G   G      V     L       Q+  LWD+   ++    + R +A  L ++ + E
Sbjct:    3 ELYANKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIIDKRIISAVRVPNDVVNAVDFVSRNGDSVV---FRTC-SEEAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGAALLRKPEVACDIMKTLRRNLNIPVSCKIRLLPEIQDTVDLARRLEDAGACAVGVHMRQTHERPHDKASWDRLAPVVSALSVPVLANGDVFMHEDINKLRKLSGASSFLIARGALANPSIFRKEGR-LPIDQVVREYLKAAAEVDNVFQNTKYNVMRMI-----PSSLEDAYASGNKYGYAKDAHVVTVPDLAATRNGLQMYSLWDLQNYYNQYQDQFRAKATALEKSKNTE 349
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: W2G1E1_PHYPR (U1-type domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2G1E1_PHYPR)

HSP 1 Score: 313 bits (801), Expect = 8.240e-95
Identity = 173/376 (46.01%), Postives = 247/376 (65.69%), Query Frame = 3 
Query:   72 QLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESI-SLGLPGGAPGMREVT-----PAKTLEQLARLWDVGADFDAETVRRRKRAEQLGEASSIEQAERGTVHKFDDAYFLGTE 1181
            +L+  KV L+PMVR+GTLP R L+LRYGAD V+ EE++D+R+++AVR  N V+  VD+V + G   +   F+TCP  E G++V+Q+GT DA  AL+AA+ V RDVAAVDINMGCPK FS+QGGMGAALL++P+VA DI+ TLRRNL++PVS KIRLL    +TV+ A+R+E AGA A+ VH+R++ + P  KA W+ L PVV A+++PV+ANGD++T  D+  ++ +SG SS ++AR AL N SIF+ +G  LP+ EV+++YL+     D+V+QN KY VM M+     P  L+++  S    G A     VT       +   Q+  LWD+   ++    + R +A  L E +  E     T+    D Y   TE
Sbjct:    3 ELYENKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIVDKRIISAVRVPNEVVNAVDFVSRNGDSVV---FRTCPE-EAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGAALLRKPEVACDIMKTLRRNLNIPVSCKIRLLPEIQDTVDLAKRLEDAGAYAVGVHMRQIHERPHDKASWDRLAPVVSALSVPVLANGDVFTHDDIDKLRKISGASSFLVARGALANPSIFRKEGR-LPIDEVVREYLKAAAETDNVFQNTKYNVMRMI-----PSSLEDAYASCNNYGYAKDAHVVTVPDLAATRNGLQMYSLWDLQNYYNQYQDQFRAKAAALEEDAKPEDQTLTTLPGAHDRYAEDTE 368
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Match: A0A2P4WWN1_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWN1_9STRA)

HSP 1 Score: 312 bits (799), Expect = 2.440e-94
Identity = 172/391 (43.99%), Postives = 252/391 (64.45%), Query Frame = 3 
Query:   72 QLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLNCSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKESISLGLPGG-APGMREVTPAKTLE-----QLARLWDVGADFDAETVRRRKRAEQLGEASSIEQAERGTVHKFDDAYFLGTEEARTDNGVGGKARDS 1226
            +L+  K+ L+PMVR+GTLP R L+LRYGAD V+ EE++D+R+++AVR  N V+ +VD+V + G   +   F+TCP  E G++V+Q+GT DA  AL+AA+ V RDVAAVDINMGCPK FS+QGGMGAALL++P+VA DI+ TLRRNL++PVS KIRLL    +TV+ A+R+E AGA A+ VH+R++ + P  KA W+ L PVV A+++PV+ANGD++   D+  ++ +S  SS ++AR AL N SIF+ +G  LP+ EV++ YL      D+VYQN KY +M M+     P  ++++ + G   G A G   VT  +        Q+  LWD+   ++    + R +A  L E    +Q    T+     A+    E   +  G   KAR++
Sbjct:    3 ELYENKICLSPMVRSGTLPLRLLSLRYGADLVYGEEIVDKRIISAVRVPNEVVNSVDFVSRNGDSVV---FRTCPE-EAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGAALLRKPEVACDIMKTLRRNLNIPVSCKIRLLPEIQDTVDTAKRLEDAGAYAVGVHMRQIHERPHDKASWDRLAPVVSALSVPVLANGDVFMYEDIDKLRKISSASSFLIARGALANPSIFRKEGR-LPVDEVVRDYLNAAAETDNVYQNTKYNIMRMI-----PSSMEDAYTSGNNYGYAKGAHVVTVPELAATRNGLQMYSLWDLENTYNQYQDQFRAKAAALEETKKPQQESSETLTTLPGAHDRYAESVHSMEGETPKARNN 383
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTF8_9PHAE4.370e-27797.52Dus domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LPM6_ECTSI1.240e-25197.83Dus domain-containing protein n=1 Tax=Ectocarpus s... [more]
H3GYM5_PHYRM1.870e-9649.70U1-type domain-containing protein n=1 Tax=Phytopht... [more]
G5AD05_PHYSP2.780e-9649.10U1-type domain-containing protein n=1 Tax=Phytopht... [more]
A0A3R7JYU6_9STRA1.140e-9545.82U1-type domain-containing protein n=3 Tax=Phytopht... [more]
A0A8K1FAM1_PYTOL1.310e-9544.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AUH8_PLAHL3.410e-9547.71Trna-dihydrouridine synthase n=1 Tax=Plasmopara ha... [more]
D0P0N4_PHYIT3.950e-9546.78tRNA-dihydrouridine synthase, putative n=2 Tax=Phy... [more]
W2G1E1_PHYPR8.240e-9546.01U1-type domain-containing protein n=12 Tax=Phytoph... [more]
A0A2P4WWN1_9STRA2.440e-9443.99tRNA-dihydrouridine synthase n=1 Tax=Phytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1525contigE-siliculosus-1a_F_contig1525:23394..31033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1806
Model size2295
Exons11
Ec32 orthologEc-06_004820.1
Ec32 ortholog descriptionAldolase-type TIM barrel
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03016
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC1.3.1.91
EggNOG OGsCOG0042@1,KOG2334@2759
EggNOG free text desc.tRNA-dihydrouridine20 synthase activity
KEGG koko:K05543
Seed eggNOG ortholog2880.D8LPM6
Seed ortholog evalue3.7e-204
Seed ortholog score718.0
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928034.3977733-UTR-E-siliculosus-1a_F_contig1525:23393..234401622928034.3977733-UTR-E-siliculosus-1a_F_contig1525:23393..23440Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1525 23394..23440 +
1696318781.7172935-UTR-E-siliculosus-1a_F_contig1525:23393..234401696318781.7172935-UTR-E-siliculosus-1a_F_contig1525:23393..23440Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1525 23394..23440 +
1622928034.550374-UTR-E-siliculosus-1a_F_contig1525:30591..310331622928034.550374-UTR-E-siliculosus-1a_F_contig1525:30591..31033Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1525 30592..31033 +
1696318781.8428433-UTR-E-siliculosus-1a_F_contig1525:30591..310331696318781.8428433-UTR-E-siliculosus-1a_F_contig1525:30591..31033Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1525 30592..31033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928034.411099-CDS-E-siliculosus-1a_F_contig1525:23440..235091622928034.411099-CDS-E-siliculosus-1a_F_contig1525:23440..23509Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 23441..23509 +
1696318781.728282-CDS-E-siliculosus-1a_F_contig1525:23440..235091696318781.728282-CDS-E-siliculosus-1a_F_contig1525:23440..23509Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 23441..23509 +
1622928034.422839-CDS-E-siliculosus-1a_F_contig1525:24360..246121622928034.422839-CDS-E-siliculosus-1a_F_contig1525:24360..24612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 24361..24612 +
1696318781.737972-CDS-E-siliculosus-1a_F_contig1525:24360..246121696318781.737972-CDS-E-siliculosus-1a_F_contig1525:24360..24612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 24361..24612 +
1622928034.4341958-CDS-E-siliculosus-1a_F_contig1525:24969..250911622928034.4341958-CDS-E-siliculosus-1a_F_contig1525:24969..25091Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 24970..25091 +
1696318781.7478547-CDS-E-siliculosus-1a_F_contig1525:24969..250911696318781.7478547-CDS-E-siliculosus-1a_F_contig1525:24969..25091Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 24970..25091 +
1622928034.4472833-CDS-E-siliculosus-1a_F_contig1525:25860..259891622928034.4472833-CDS-E-siliculosus-1a_F_contig1525:25860..25989Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 25861..25989 +
1696318781.757445-CDS-E-siliculosus-1a_F_contig1525:25860..259891696318781.757445-CDS-E-siliculosus-1a_F_contig1525:25860..25989Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 25861..25989 +
1622928034.4637337-CDS-E-siliculosus-1a_F_contig1525:26620..266811622928034.4637337-CDS-E-siliculosus-1a_F_contig1525:26620..26681Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 26621..26681 +
1696318781.7664428-CDS-E-siliculosus-1a_F_contig1525:26620..266811696318781.7664428-CDS-E-siliculosus-1a_F_contig1525:26620..26681Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 26621..26681 +
1622928034.475806-CDS-E-siliculosus-1a_F_contig1525:26966..270491622928034.475806-CDS-E-siliculosus-1a_F_contig1525:26966..27049Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 26967..27049 +
1696318781.7758071-CDS-E-siliculosus-1a_F_contig1525:26966..270491696318781.7758071-CDS-E-siliculosus-1a_F_contig1525:26966..27049Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 26967..27049 +
1622928034.4888034-CDS-E-siliculosus-1a_F_contig1525:27673..277521622928034.4888034-CDS-E-siliculosus-1a_F_contig1525:27673..27752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 27674..27752 +
1696318781.7860088-CDS-E-siliculosus-1a_F_contig1525:27673..277521696318781.7860088-CDS-E-siliculosus-1a_F_contig1525:27673..27752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 27674..27752 +
1622928034.5002215-CDS-E-siliculosus-1a_F_contig1525:28436..285471622928034.5002215-CDS-E-siliculosus-1a_F_contig1525:28436..28547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 28437..28547 +
1696318781.7963705-CDS-E-siliculosus-1a_F_contig1525:28436..285471696318781.7963705-CDS-E-siliculosus-1a_F_contig1525:28436..28547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 28437..28547 +
1622928034.5114462-CDS-E-siliculosus-1a_F_contig1525:28943..290681622928034.5114462-CDS-E-siliculosus-1a_F_contig1525:28943..29068Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 28944..29068 +
1696318781.804753-CDS-E-siliculosus-1a_F_contig1525:28943..290681696318781.804753-CDS-E-siliculosus-1a_F_contig1525:28943..29068Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 28944..29068 +
1622928034.5251253-CDS-E-siliculosus-1a_F_contig1525:29437..295091622928034.5251253-CDS-E-siliculosus-1a_F_contig1525:29437..29509Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 29438..29509 +
1696318781.8248756-CDS-E-siliculosus-1a_F_contig1525:29437..295091696318781.8248756-CDS-E-siliculosus-1a_F_contig1525:29437..29509Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 29438..29509 +
1622928034.5392032-CDS-E-siliculosus-1a_F_contig1525:29888..305911622928034.5392032-CDS-E-siliculosus-1a_F_contig1525:29888..30591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 29889..30591 +
1696318781.833947-CDS-E-siliculosus-1a_F_contig1525:29888..305911696318781.833947-CDS-E-siliculosus-1a_F_contig1525:29888..30591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 29889..30591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1525.3042.1prot_E-siliculosus-1a_F_contig1525.3042.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1525 23441..30591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1525.3042.1

>prot_E-siliculosus-1a_F_contig1525.3042.1 ID=prot_E-siliculosus-1a_F_contig1525.3042.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3042.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=602bp
MNVEDAADQLFRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRV
VNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQMGTGDAT
NALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGTL
RRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASK
ARWEELRPVVDAVNIPVIANGDLYTRADMAGIKALSGCSSVMLARPALLN
CSIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDH
LKESISLGLPGGAPGMREVTPAKTLEQLARLWDVGADFDAETVRRRKRAE
QLGEASSIEQAERGTVHKFDDAYFLGTEEARTDNGVGGKARDSSDAPDPY
AARGRGGRDRENGGSGSGGVEATAMAVENGGSGSTGAPTTTTAAIARSTC
AGDGDNCVGGGHGSGEGGGTDAEGGEEAHPRGGDRAGGGEAGGTVARSVV
AIVATAREASRGGGGDGDGGGGAGTGTTVAEEGPQPQQQRSGGIAWSERG
RSDERGEGGEAGSFSGDVVHAEEVLRQTWVSSKRPREEEEEEEEEDVSAV
L*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1525:23394..31033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1525.3042.1 ID=mRNA_E-siliculosus-1a_F_contig1525.3042.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3042.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7640bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1525:23394..31033+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTAGGGCCGTAGCCGATAGCGTGGGGCATCACGAAGCTGCAACAGGATG
AACGTGGAAGACGCCGCCGACCAGCTTTTTCGAGGCAAGGTTATCCTGGC
ACCCATGGTCCGTGCGGTAAGAACGCCATTTTTTCCTGTGGGGGCGAGAA
TCTCCGCGTTACTGCTGTCGTCTCGCTGGGAGTAGACATTTTGGCACACC
CAAGGGTACATCAACCTTGCTTTTTGTAGTCACCCGATAGTCATCACTCT
CGGTGTGAAGATCCTATAGTGACCCTGGTTATGTTCATGGTGTGTGGGGT
TTCGATTGGAACACAGTACCAGTGGTTTTTGGTCGGCAGGATACAATTTT
TCGACCACCATGGATACATCCCATGACCCACTCTCCGGACAAGCGCCGCT
GGTGAGCCAGCAAGGCACGCGGTACACGTACTGGTTGTCAGCTGTACCGT
GTTACAAGTGTCGGCCTGTTTGTGTGAACAGTTTTTTTGTGTGTATGTCA
CCGTTTTAGAGAGCACAGAACACAGCCTTGTTGAGAAGAAACAGTACAAT
AGTGCTCATGTTTATTTCTAGACATGCATACAATATGCATACGCCGCAAG
ATATGTTACTGGTCAGCAGTCTGAGATACAACGGCGGTCTTACATAACGA
AGGTCTTCAAAGGGATGTCCAGAAAGAAGCCCTTTGCCCGTAAGATTGAA
TACCGCCGGCCGGTGGAAGATCGCCCTCACGTGCGGCAGATAGCGTCCTT
CCGTTCCCAGTACTGTACAGTTATGGCCGAAGCGATTTCATCCACGTGCC
GCTGTGTGTGTACTTGAACGTAGGTCAACCTCTACGTACTGTAGTAACGG
GTAGACTACTGAGTATGGTGAAGGCTACCACTTGGAGCGTCTCTTCGTGT
GTTGGTTTGTAGGTGATTCCACTTGCCTCTAACCCCCCACCCGCGCCCAC
TCCCCACGGTGTGGCAGGGCACGCTGCCTTTCCGTGCCCTCGCCCTACGC
TACGGGGCAGACACGGTGTTCACGGAGGAGGTCATCGACCGTCGAGTCGT
CAACGCCGTCAGGACGGAGAACCCGGTGCTCGGCACCGTGGACTACGTGG
AGAAGAGGGGCAAGAAGGGCATCGCGACGCCGTTCCAGACGTGTCCCGCG
CTCGAGCGCGGTCGTTTGGTGTACCAGATGGGGACGGGCGACGCCACCAA
CGCCCTGCGCGCGGCCCAGGTGTACGGACGGCTGTAGGCATGCCTGGTGT
ACCAAACTGGTAGATGTTTTTTGCTGTGGCATCCTATTGTTTTTGTCAAC
CAGGCGATGGAAGTGCCTGCTGCATGGAGGCGACAATAAGTGGGCTTTTT
TCCACAGCCGGGTCTTCATTACTGGCAATTTCTGTCCAAACGCAGCTGCT
GTTGCAGAGCGGTTGATTCGCTGTGCATGACGCCTTGGGCACGAGGTGAT
GATGCCATTGATGCCGTTACTGCACTTAGTTGATTGCCCCCCTTCACCGT
GCTGACGGAATGGCTGACCCCCCAACCACCTCGGTCTCGCCCTTCCTCTT
GTCTCTCTTGTCCCCCATGCGCGCAGCACGTAGAGCGAGACGTAGCGGCC
GTTGACATCAACATGGGATGCCCGAAGAAGTTCTCGCTGCAGGGCGGCAT
GGGAGCGGCGCTGCTCAAACAACCCCAAGTCGCGGCGGATATCGTGGGGT
AAGCCCGGGTCTGCTCGAAAACGGCAGTTGTCAGACAGGAAGAATGAAGG
CGACGATTGTTGAGCTGCGCTATTTTCTCAAACAAAATGGACCCAAACCG
AGGCGATTCCGATTCCGTCCCGCGATTCCGTCCCGTCCCCGCAGCCATCA
CCGCCGGAAAACGGTTTACCGATGACGTCGCTTGGTTGCAACGCGTTCGG
AAGTTCCACACGCTCGCTGGAAGCATTCAACGCGCCCTTCCCCATCTCCT
CCGAGAGAAGGAGGCTTTCAGTCGACTACATACTGTAGCGCGTTTATTTT
CCCAAGCAGCGTTTTGCAAACGACTCGATTACCGAGCGGACGCCGGCATC
GGAGACCCGTGTTCGGCCCTGTTGTCGTGTGGCACGACGTCGTTTTGTCT
CAGTAGCGTTCGCGAGGACACTACTATATAAGCTTGATCTTTTGGTATCC
GTTGCAGGTGTGGGTTGGGGGTTAGGGTTAACGTTAGGCCTTTTTCATAG
AATAATTTCTTATGATCCTCGCGAAAGCGGTCCTTTTTTCTTACATGTGG
GGGGGGGGTTCCGTGCGGCATGTTCCTGGGGCGGTATATACGCTCGTCTG
GGAGTCCACGCACGTGCGGGTCTTGTGTACCGCCGGTGCTTCGGAAACAC
GCGGCGTGTCCCCTGAGGTGTGTCGCTCCCAACGAAAAACTCTCGTCGCG
TGACCGCCGAAAACACACTGAATGGAATCGATTTGCTTTCCGACGACAAC
GTGATCACATCTCAAAGGACCCTGAGGAGAAACCTTTCGGTGCCCGTGAG
CGTCAAGATCCGCCTGCTGGAGACCCCCGGCGAAACGGTGGAGTTCGCGA
GGAGGATGGAGAAGGCGGGGGCTTGCGCCCTGTCCGTGCACGTTAGGTAA
GCAGCCTCTCCGGAGGGGACACGACACGAGATAAACCTGTGGGTGATGGT
GGTGGCTGTCGAGGTATACGAAAGACATCTGCCTGTCGACGATTGGGCCA
AGAGTAGAGTGACTGCCCAGTTCTCCGCTCGCGTCCACGTGGTGGAGAGC
ATTTCCAGGACTAGGCGTGCAGCTTCTCTGGCGCGTGTGCACGTTTCGGT
TCGCGATATGAGGGGATAAGATAGGCAACGGTTTTGAGGGGAGGGGGGGC
GCATCAAGGCTGTGCGGCGGACAGACAGGAACGGCGCCAGCATATTGCGT
GTGTTCCGTGTTGTCGACAAGAGGTATTGTTGTTGGCGCTTGACGCTTGC
CCTATAGTACTGCTGCTGCTGCTGAGATGTTCCGCACGACTTGCGCCGAC
ACCACATGGCGTGGAACGCGCGACGATCATCGTCAAACACCCAGTTTTCG
AACACGCGTACCACGTACTACCAGTGTTCACGCGCGCGCACCCAAACGCC
TGATCATTTGTTTGGTCAGGGAGGTTTTTTCCATCATCCGAACTTGTTTG
CAATGATTCTTTCGACGACCCCGTCTTTGATTTCTTTCTCTTCGCTGGTT
TGATTCGTTTTTTTCGCAACCCGACAGGAAGGTTGGAGATACTCCAGCTT
CTAAGGCCCGGTGGGAGGAGCTTCGGCCTGTCGTGGACGTGAGCGCATGT
CTTCCTTGACTCTCGAAAGTGTTTTTTATTGCTTGGCATACCTGAGCATG
ACACGTTTGTTGCATCTTCCTTCTGCCTGGCACGCATGAGTATTTTAGTG
GACACCCACACTACGGCGGGCGTCCTTGTACGGGATCATCTGGATCGGAG
ATGGCGTGTCTCATCCGTTCCCTTTTCCCTTACGTTTGTTCCACGAAACA
CACGCTCACTGTCGGCTACTCCTCCTCCTGCGGTCCCATCAAAAACAACA
ACAACAACAACAACAAACAACAGGCGGTCAACATCCCCGTGATTGCCAAC
GGGGACCTGTACACGAGGGCGGACATGGCGGGCATCAAAGCCCTGAGCGG
ATGCAGGTGGGCGGCGAAAAATTTTGTATCGTGTCTATTGGCGGAGCTGT
CTTTGTGTGCGGGTGCTGCGTTCACGTTGTCACCATCTATTTTGATGGTA
TGTTCTACGACGCTGTAGAAGTAGGCAGTCAGGAGGGTCGTGATGTACTT
CTCTGGTGGGAGTGGAGTTCCCTGAAATACGAAATATGCAAGGCTTGTAG
TAGCCCAACAACAAAAGGGGAGGGGTGGAGGAGGGGCAGAGGACGACAGC
ACGGCGTACGCGCCGGGCCTACAGCAGCTCCAAGAAGTTGTGGAAGAAGT
TGGCACCACCGTACACCGAAGTCGGCATGAATCTCTGCCTGCCGTGCGTT
GGAATTGCTTTGAAGGCGTGTCAGGAACAAGCGGTGGAGCTTACAAACAG
CCTAAGTCATATTCTTGGGGAGAAATGGGGCAATATCTATTGAGCTTATC
CACGTTTGATAAGCCTAGGACGGTGCTGCACGTACACCCAGTAAGGAGGA
CGTAGGCGTTGATTTTTGTCTTTTTTGTCTTCTCCCTTCAGCGACACTTT
TCCTTATCGTCTGCTCCTTGTCCGCCGTTCTTGCTATTTTTTGGGGGCGT
TGCTGCGGCGGGCGGAAAATTCCGTGCCAGCTCGGTGATGCTGGCGCGAC
CGGCCCTGCTGAACTGTTCCATCTTCAAGCCCGACGGACACGTGCTGCCG
CTGAAAGAGGTTAGTGTACCTCTAGATGAGAAACTGCAGGACCTGCACCG
TGCCCCGCGTCACGTACGACTTTAGTGGAACTCCTGCTCTGCCCTGCTGC
CTCGCTGTCCGATGGGCTGGCTGATACAAGACAGCTGGGGGGAACGACGC
CGAATGAACGCGCGCAGCGCTATTAGTTAGTGCTACTGCCGTACATTTGG
GGTTTGGAATGTTTTCTTTCGGTTTCGCGAACGAACGACGGGCGCCAAAC
CGCGTGTGCGCGCAGCTGTGCTGGTAGCTGGTGAAACACCCCACGGCTGC
TGGAGACCCTCGATGGTTGATACTTACGTCTCTTGTTCGGGGCTGTCGAT
TGGGCTGAACAATGCGCCCTTTGTGCGGGAGATTCGGATTAACACATCAC
GATTACTTACCCTCCTTGCAAAAAGGAAAACTTAGGCAGTAGTCACTCCA
CGTGTTCCAGTAGTGCGTTGAACCACGGGACCTGCCAAAAACAGGGCATT
AATAGCGTCGTGGGCAAATGTGGGAACTATCCACCCTGCTGTTCGACGGA
TATGTGTCATTTTTGCACCGTGCCGGTTAGCCGCAGCTGTCATGGACCCC
CCTCGCTCACCCCACTCGCCCCCCCCGCTAACGATTCCAAAGGGTACGCC
AACCTCCCACGAAACTCCCAACCTCTTGCTGATAACCAAACAGGTGATTC
AGCAGTACCTGCGGGAGTGCTTTCGGTACGACTCGGTCTACCAGAACGCC
AAGTACACCGTGATGGAGATGCTCACCAAGAGGAGGCATCCGGATCACCT
CAAGGTGGGCTCTCTGTAAGAGCTCATGTAGTCGGTGCAGCGAGGACACA
TATGTAAAGTACGGCAATGTTGTGGCTGGGTCGGTCGACCGCCGCGACTC
CAAAATTTGCTCGGGTGAGTAAGCCGGTGCCACGATACACTCTATCGATC
CTCTCGTAGAAGTGCTCCGTCGCATCCGAGTGCTACGGATTCCTTCGGTG
TGATTCTTTGACTTCTCTTCCCTTCCCTGAGTGGTAGGTCGAGTGATCAC
CTTCCCGTCGAATGCTCGGTGCTCCAATGTTCTTAAACTTCCTTTTCGTT
TTAGCGTTGCCGTTGTTCCTTCTCTCTCAAGTTGCTCCATGTACAGTTCG
CCAAGCGCGTCCGCGCCCTTCCTCCGCCTCGTGCCGTCTGCTGGAATCAG
GAATCCATCTCCCTGGGCCTGCCCGGGGGTGCTCCTGGCATGCGCGAGGT
AACGCCGGCGAAGACGCTGGAGCAGCTGGCGAGGCTTTGGGACGTGGGAG
CCGACTTCGATGCGGAAACTGTCAGGTGCGGCACGACCGGAGCCACGCCG
TGACTCCCACACACACACACACTCCTACTCTTGCGCTATCTAGCACATCG
CCCCCCGCTCTTTGTGTGATTCGTGATTCACGTCGGGAGTCCCCCCCGTC
TACGTTGGTGATTCGCGCCGCGCTGCCTCTTCTTCGTTGCCAAGGCGATC
GAGGAAATAGCTGCGTTGACTTGTGTGCAGAGAGATGGTCTTGTTCACTG
GAGGCCTTTCATGCGGTGGTGTGCATGCTGCCAACCGGACGGAAGCCGTT
CAGGTAGCGGTGTATTTTCTTGCTCCATCCTTCCACACCACCCCCATCCC
ATCCACCCCGCCCCCCGCCACCCTCCTGACCCCCGATCGCTCAGACGAAG
GAAGCGCGCGGAACAGCTTGGCGAGGCTAGTTCGATAGAGCAAGCAGAGC
GAGGGACTGTCCACAAGTGAGTCGCGACGATTGACCTTCTGCTCTCCTGG
CGCCGAGAAAGAACAGAGTGGTTGTGCGTTCGAGAGTAGGTATACCGATT
TGGAGAGTAGGGAAACCCCGCCTGATTGGAAGCCGCTATTATTGGTAGTG
GTAACGCCGCTGGTTTGCAAGACGCAAGGCGCAATGTTGCGGCACTAAAC
CACGACCTCCGTGTGACACTCTCGTGTACCCCTACGACATAACTAAACAA
GAATAATGCAGCGGTATCATGGGGCTTTTTTTCATCGTTCTCTGATTGCG
TTTTTTGTGTCCTACGCCTGTTTTTAGTGTACGTTTTCCCCGCTTTGTTC
TTGGTGCTGCTGTTTCAACCCGGCAAACACCACCATCGTGCACAGGTTCG
ACGACGCGTATTTTCTGGGCACAGAAGAAGCGAGAACAGACAACGGTGTT
GGCGGCAAGGCTCGCGACTCGTCGGACGCTCCTGACCCCTACGCTGCGCG
AGGCCGGGGCGGTAGGGACCGTGAGAATGGTGGCAGCGGAAGCGGGGGCG
TCGAAGCCACCGCTATGGCCGTAGAAAATGGCGGTAGTGGTAGCACAGGG
GCACCCACCACCACTACCGCGGCGATCGCCCGCTCAACCTGCGCCGGTGA
CGGAGATAACTGTGTTGGCGGGGGCCATGGGAGTGGCGAAGGAGGAGGGA
CGGACGCGGAAGGGGGAGAAGAGGCGCACCCTCGAGGGGGCGACCGAGCG
GGGGGTGGCGAAGCGGGGGGGACCGTGGCGCGATCGGTGGTTGCTATTGT
CGCCACGGCGAGGGAAGCAAGCCGCGGTGGTGGCGGTGATGGCGATGGCG
GTGGAGGTGCTGGGACTGGCACAACAGTAGCAGAAGAAGGGCCGCAACCG
CAGCAGCAGAGGAGTGGCGGGATTGCTTGGTCCGAACGAGGGAGGAGTGA
TGAGCGAGGAGAAGGAGGAGAAGCTGGTAGCTTCTCCGGAGATGTTGTAC
ACGCCGAAGAGGTCCTGCGGCAGACGTGGGTGTCTTCGAAGCGACCTCGG
GAGGAGGAGGAGGAGGAGGAGGAGGAAGATGTGAGCGCGGTGTTGTAGTA
GCTAATGGCTGGGGAGTGCCCATGCGGTTGCATGCGCCGTACGATACGAT
CACAGAGAGCGCGTCAAGTTTGACCCAACGCTGCAGCGTTATTTCTGGGG
CGCGTTTGTATCGACAGGGCCAATTGCATTTTCGTGAGAAGGCCACGACT
CTCTCTCCTTGCTAGGGAGAGGTCGAAAGAGCGCTAAACAGACTGGTGAT
GAACAGTGGGTGCAGTGGTCGGGGTTAGGCGACTTGATTTCAAAATCCAA
TATTGTTAAGGCCGGGCCGAGTTGGGTGGTGAAAATCCGTCCGAGGAGAA
TTTCCTCTATTGGTATCGCAGCTTGCCTCGGGCAACCGTGCTGGGCCTCC
AACAGATCTCGTTTATTTATAAAGGTGGTGTAGAGAGCAGTGAAGAGATG
AAGATTCGCTAAAAAAGCATCCCTTAGGCATGTGTCGCAC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1525:23394..31033+

>mRNA_E-siliculosus-1a_F_contig1525.3042.1 ID=mRNA_E-siliculosus-1a_F_contig1525.3042.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3042.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1525:23394..31033+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACGTGGAAGACGCCGCCGACCAGCTTTTTCGAGGCAAGGTTATCCT
GGCACCCATGGTCCGTGCGATGAACGTGGAAGACGCCGCCGACCAGCTTT
TTCGAGGCAAGGTTATCCTGGCACCCATGGTCCGTGCGGGCACGCTGCCT
TTCCGTGCCCTCGCCCTACGCTACGGGGCAGACACGGTGTTCACGGAGGA
GGTCATCGACCGTCGAGTCGTCAACGCCGTCAGGACGGAGAACCCGGTGC
TCGGCACCGTGGACTACGTGGAGAAGAGGGGCAAGAAGGGCATCGCGACG
CCGTTCCAGACGTGTCCCGCGCTCGAGCGCGGTCGTTTGGTGTACCAGAT
GGGGACGGGCGACGCCACCAACGCCCTGCGCGCGGCCCAGGGCACGCTGC
CTTTCCGTGCCCTCGCCCTACGCTACGGGGCAGACACGGTGTTCACGGAG
GAGGTCATCGACCGTCGAGTCGTCAACGCCGTCAGGACGGAGAACCCGGT
GCTCGGCACCGTGGACTACGTGGAGAAGAGGGGCAAGAAGGGCATCGCGA
CGCCGTTCCAGACGTGTCCCGCGCTCGAGCGCGGTCGTTTGGTGTACCAG
ATGGGGACGGGCGACGCCACCAACGCCCTGCGCGCGGCCCAGCACGTAGA
GCGAGACGTAGCGGCCGTTGACATCAACATGGGATGCCCGAAGAAGTTCT
CGCTGCAGGGCGGCATGGGAGCGGCGCTGCTCAAACAACCCCAAGTCGCG
GCGGATATCGTGGGCACGTAGAGCGAGACGTAGCGGCCGTTGACATCAAC
ATGGGATGCCCGAAGAAGTTCTCGCTGCAGGGCGGCATGGGAGCGGCGCT
GCTCAAACAACCCCAAGTCGCGGCGGATATCGTGGGGACCCTGAGGAGAA
ACCTTTCGGTGCCCGTGAGCGTCAAGATCCGCCTGCTGGAGACCCCCGGC
GAAACGGTGGAGTTCGCGAGGAGGATGGAGAAGGCGGGGGCTTGCGCCCT
GTCCGTGCACGTTAGGACCCTGAGGAGAAACCTTTCGGTGCCCGTGAGCG
TCAAGATCCGCCTGCTGGAGACCCCCGGCGAAACGGTGGAGTTCGCGAGG
AGGATGGAGAAGGCGGGGGCTTGCGCCCTGTCCGTGCACGTTAGGAAGGT
TGGAGATACTCCAGCTTCTAAGGCCCGGTGGGAGGAGCTTCGGCCTGTCG
TGGACGAAGGTTGGAGATACTCCAGCTTCTAAGGCCCGGTGGGAGGAGCT
TCGGCCTGTCGTGGACGCGGTCAACATCCCCGTGATTGCCAACGGGGACC
TGTACACGAGGGCGGACATGGCGGGCATCAAAGCCCTGAGCGGATGCAGG
CGGTCAACATCCCCGTGATTGCCAACGGGGACCTGTACACGAGGGCGGAC
ATGGCGGGCATCAAAGCCCTGAGCGGATGCAGCTCGGTGATGCTGGCGCG
ACCGGCCCTGCTGAACTGTTCCATCTTCAAGCCCGACGGACACGTGCTGC
CGCTGAAAGAGCTCGGTGATGCTGGCGCGACCGGCCCTGCTGAACTGTTC
CATCTTCAAGCCCGACGGACACGTGCTGCCGCTGAAAGAGGTGATTCAGC
AGTACCTGCGGGAGTGCTTTCGGTACGACTCGGTCTACCAGAACGCCAAG
TACACCGTGATGGAGATGCTCACCAAGAGGAGGCATCCGGATCACCTCAA
GGTGATTCAGCAGTACCTGCGGGAGTGCTTTCGGTACGACTCGGTCTACC
AGAACGCCAAGTACACCGTGATGGAGATGCTCACCAAGAGGAGGCATCCG
GATCACCTCAAGGAATCCATCTCCCTGGGCCTGCCCGGGGGTGCTCCTGG
CATGCGCGAGGTAACGCCGGCGAAGACGCTGGAGCAGCTGGCGAGGCTTT
GGGACGTGGGAGCCGACTTCGATGCGGAAACTGTCAGGAATCCATCTCCC
TGGGCCTGCCCGGGGGTGCTCCTGGCATGCGCGAGGTAACGCCGGCGAAG
ACGCTGGAGCAGCTGGCGAGGCTTTGGGACGTGGGAGCCGACTTCGATGC
GGAAACTGTCAGACGAAGGAAGCGCGCGGAACAGCTTGGCGAGGCTAGTT
CGATAGAGCAAGCAGAGCGAGGGACTGTCCACAAACGAAGGAAGCGCGCG
GAACAGCTTGGCGAGGCTAGTTCGATAGAGCAAGCAGAGCGAGGGACTGT
CCACAAGTTCGACGACGCGTATTTTCTGGGCACAGAAGAAGCGAGAACAG
ACAACGGTGTTGGCGGCAAGGCTCGCGACTCGTCGGACGCTCCTGACCCC
TACGCTGCGCGAGGCCGGGGCGGTAGGGACCGTGAGAATGGTGGCAGCGG
AAGCGGGGGCGTCGAAGCCACCGCTATGGCCGTAGAAAATGGCGGTAGTG
GTAGCACAGGGGCACCCACCACCACTACCGCGGCGATCGCCCGCTCAACC
TGCGCCGGTGACGGAGATAACTGTGTTGGCGGGGGCCATGGGAGTGGCGA
AGGAGGAGGGACGGACGCGGAAGGGGGAGAAGAGGCGCACCCTCGAGGGG
GCGACCGAGCGGGGGGTGGCGAAGCGGGGGGGACCGTGGCGCGATCGGTG
GTTGCTATTGTCGCCACGGCGAGGGAAGCAAGCCGCGGTGGTGGCGGTGA
TGGCGATGGCGGTGGAGGTGCTGGGACTGGCACAACAGTAGCAGAAGAAG
GGCCGCAACCGCAGCAGCAGAGGAGTGGCGGGATTGCTTGGTCCGAACGA
GGGAGGAGTGATGAGCGAGGAGAAGGAGGAGAAGCTGGTAGCTTCTCCGG
AGATGTTGTACACGCCGAAGAGGTCCTGCGGCAGACGTGGGTGTCTTCGA
AGCGACCTCGGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGTGAGCGCG
GTGTTGTAGGTTCGACGACGCGTATTTTCTGGGCACAGAAGAAGCGAGAA
CAGACAACGGTGTTGGCGGCAAGGCTCGCGACTCGTCGGACGCTCCTGAC
CCCTACGCTGCGCGAGGCCGGGGCGGTAGGGACCGTGAGAATGGTGGCAG
CGGAAGCGGGGGCGTCGAAGCCACCGCTATGGCCGTAGAAAATGGCGGTA
GTGGTAGCACAGGGGCACCCACCACCACTACCGCGGCGATCGCCCGCTCA
ACCTGCGCCGGTGACGGAGATAACTGTGTTGGCGGGGGCCATGGGAGTGG
CGAAGGAGGAGGGACGGACGCGGAAGGGGGAGAAGAGGCGCACCCTCGAG
GGGGCGACCGAGCGGGGGGTGGCGAAGCGGGGGGGACCGTGGCGCGATCG
GTGGTTGCTATTGTCGCCACGGCGAGGGAAGCAAGCCGCGGTGGTGGCGG
TGATGGCGATGGCGGTGGAGGTGCTGGGACTGGCACAACAGTAGCAGAAG
AAGGGCCGCAACCGCAGCAGCAGAGGAGTGGCGGGATTGCTTGGTCCGAA
CGAGGGAGGAGTGATGAGCGAGGAGAAGGAGGAGAAGCTGGTAGCTTCTC
CGGAGATGTTGTACACGCCGAAGAGGTCCTGCGGCAGACGTGGGTGTCTT
CGAAGCGACCTCGGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGTGAGC
GCGGTGTTGTAG
back to top