mRNA_E-siliculosus-1a_F_contig1525.3039.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1525.3039.1
Unique NamemRNA_E-siliculosus-1a_F_contig1525.3039.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1525.3039.1 vs. uniprot
Match: A0A6H5KV73_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV73_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.790e-47
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:  163 MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINHVGVSLTQHAPVPSKYRDKPPPKSGAAGKAARD 426
            MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSIN VGVSLTQH+PVPSKYRD P PKSGAAGKAAR+
Sbjct:    1 MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQHSPVPSKYRDNPSPKSGAAGKAARE 88
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BLAST of mRNA_E-siliculosus-1a_F_contig1525.3039.1 vs. uniprot
Match: A0A3B4TF43_SERDU (RING-type domain-containing protein n=1 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4TF43_SERDU)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-7
Identity = 30/73 (41.10%), Postives = 39/73 (53.42%), Query Frame = 1 
Query:  127 CCICFSILEDPVMLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINHVGVSL 345
            C IC S  + PV  PC H  C+ C    +KE+QRCPQC TPIP    L+ +N  +  +V+    S N    SL
Sbjct:   20 CSICLSTFDCPVTTPCGHNFCQDCLLATWKETQRCPQCRTPIPTKPELK-KNTVLSAVVETFNLSSNKTEDSL 91
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BLAST of mRNA_E-siliculosus-1a_F_contig1525.3039.1 vs. uniprot
Match: A0A0S7L9T8_9TELE (TRI47 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7L9T8_9TELE)

HSP 1 Score: 55.8 bits (133), Expect = 7.280e-6
Identity = 29/93 (31.18%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:   88 IEIVKETAGKHFKCCICFSILEDPVMLPCNHPLCRGCASQCFKESQR-----CPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINHVGVSLTQ 351
            I +  +T+  +F CC+C S+L DPV +PC H  C  C    + E+       CPQC        +L+  N  +  + +K+K S  +V +S +Q
Sbjct:   51 IMMADQTSPDYFSCCLCQSLLRDPVAIPCGHSFCMDCIDGYWNEADYTGIYICPQCKITFTQRPVLRP-NATLTMVAEKIKKSGLNVNLSASQ 142
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BLAST of mRNA_E-siliculosus-1a_F_contig1525.3039.1 vs. uniprot
Match: A0A0P7X438_SCLFO (RING-type domain-containing protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7X438_SCLFO)

HSP 1 Score: 50.8 bits (120), Expect = 8.580e-5
Identity = 36/102 (35.29%), Postives = 46/102 (45.10%), Query Frame = 1 
Query:  103 ETAGKHFKCCICFSILEDPVMLPCNHPLCRGCA-----SQCFKESQ-------RCPQCMTPIP-NLRMLQG--RNKWIVHMVDKL-KNSINHVGVSLTQHAP 360
            ET      C IC  + EDP++LPC H LC GCA     S C            +CP C   I  N R L+G  RN  + +++D+  K S  H     T H P
Sbjct:    2 ETLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCTPNEPVESITAFQCPTCRYVITLNQRGLEGLKRNVTLQNIIDRFQKASEGHAPQQETVHGP 103
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KV73_9PHAE3.790e-4794.32BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A3B4TF43_SERDU1.360e-741.10RING-type domain-containing protein n=1 Tax=Seriol... [more]
A0A0S7L9T8_9TELE7.280e-631.18TRI47 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A0P7X438_SCLFO8.580e-535.29RING-type domain-containing protein n=1 Tax=Sclero... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1525contigE-siliculosus-1a_F_contig1525:9445..11697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size603
Model size603
Exons3
Ec32 orthologEc-06_004780.1
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelKinetoplastida
COG Functional cat.O
EggNOG OGs28TY1@1,2R0NK@2759,3XWQX@5653
EggNOG free text desc.Zinc finger, C3HC4 type (RING finger)
Seed eggNOG ortholog5671.XP_001464687.1
Seed ortholog evalue1.4e-06
Seed ortholog score60.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1525.3039.1prot_E-siliculosus-1a_F_contig1525.3039.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1525 9445..11697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928034.0778406-CDS-E-siliculosus-1a_F_contig1525:9444..96861622928034.0778406-CDS-E-siliculosus-1a_F_contig1525:9444..9686Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 9445..9686 -
1696318781.53133-CDS-E-siliculosus-1a_F_contig1525:9444..96861696318781.53133-CDS-E-siliculosus-1a_F_contig1525:9444..9686Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 9445..9686 -
1622928034.0920537-CDS-E-siliculosus-1a_F_contig1525:9975..101931622928034.0920537-CDS-E-siliculosus-1a_F_contig1525:9975..10193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 9976..10193 -
1696318781.543296-CDS-E-siliculosus-1a_F_contig1525:9975..101931696318781.543296-CDS-E-siliculosus-1a_F_contig1525:9975..10193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 9976..10193 -
1622928034.1077094-CDS-E-siliculosus-1a_F_contig1525:11554..116971622928034.1077094-CDS-E-siliculosus-1a_F_contig1525:11554..11697Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 11555..11697 -
1696318781.5527754-CDS-E-siliculosus-1a_F_contig1525:11554..116971696318781.5527754-CDS-E-siliculosus-1a_F_contig1525:11554..11697Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 11555..11697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1525.3039.1

>prot_E-siliculosus-1a_F_contig1525.3039.1 ID=prot_E-siliculosus-1a_F_contig1525.3039.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3039.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=201bp
MAHVDGLAGPGAGKIARQAPESIGSVADFIEIVKETAGKHFKCCICFSIL
EDPVMLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHM
VDKLKNSINHVGVSLTQHAPVPSKYRDKPPPKSGAAGKAARDRARARAST
GEAGLPSASCGSGGGGSGGGRRGRGKARQTGRASAGGSRGGAAAAAPAAA
A
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mRNA from alignment at E-siliculosus-1a_F_contig1525:9445..11697-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1525.3039.1 ID=mRNA_E-siliculosus-1a_F_contig1525.3039.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3039.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2253bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1525:9445..11697- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTCATGTGGATGGCCTTGCTGGGCCAGGCGCGGGGAAAATTGCGAG
GCAAGCGCCCGAGAGTATAGGGTCGGTTGCAGATTTCATCGAGATCGTGA
AGGAAACGGCTGGCAAGCACTTCAAGTGCTGCATTTGTTTCAGGTCAGTT
GGCTCTTTCGCTTCCCACGCACTCACTTGCCCGACCACTTGTGCTTTGAA
AGAGAACGCCCATTGCTTCTCGCTCACACCGAACTGCGTATGGTTTAGCC
AGGGCTAATTGCTCATTCTTGTGAAGACAATACTCGATTTTTCTGCAGTT
GCAAGCAAGGCTGAAACACACTTTTGGTCTGCTGGTTGTTTTGGTTTCAT
CCACTGCATCGATCGTGCCCTGCAGCACGGCGGTGATACCCATTAGTCTA
TCACTTGACAATGCCCAATGGGTTACCACTGACCAAAGGAGCAGGGTAGT
GCTAATGCCCTACTTGCACCCACAGAAGTACAACCCGGCGGCAAGGCGAA
ACCTGTGTACCTACGCCAAGACAGCAGTGAGAACCCCCAAGCGAGAACCC
CCACGTACATGTGACCTGGAGGTTGCATGACGTAAGATACCACCTCCCCT
GGGACCGATTTTCAAAACCCGACGTCTCTGCACTCTGCACCAAAGCAGCA
GTGATGGTGTCAAATGGTGGTGTTAGAACCGTCTCGTCGAGAGCTTTCCG
GGAACGCACGATTTGATCTTTGTTCCCTCTTCATGGCGGAGGAGTCGAGC
CTTGAAATTCGGTCCAGGGGATGTGGTATCTTCTGCGACCGGCGGTCTAG
GAACATCACATTCACTGCTTGTTGTAGATCGGCAGCAATGCTTGCAAGCA
GAATGCTTGCAAAAGTGACCCGCATGTAGATATCGCTATGCGCTGCTCGG
GAAACCGTAGAAATACAGACAGGTAGTTTCCGCTGACGCGATGAATTCAT
TGCCAAATATATCGTACATGTAGACTCTTTTCTATATATGGATAAAGATG
GATCGTTGTGTCATACTGAAAAAAAAAGGATCACACCCAAAAGCTTGCCA
CTCACAGGTAGCAGCTGACAGGTAGCCGTGATGCGGTAAAACTAGAGGCG
TGCCTCGTGCAAACAGCACGTATGGCAAAATGATATACACACACCAAGAG
ATACGGAACCCAGTCCAACACTATGGAGTATCCACACACACACTCACATC
CTTCAGATCCAAACCGCCTCCGTGCGCTTGTCGAACACAACAAGTCGGCA
GTAGAAGGAACGGCAGTAGAAGTAGCAGAGCACCAACGCAAGGCGGCCAC
CGCAGTATCTTACAAGCTGCTGTTGTTCGGGTCTGTGTTATGGTTGCCCC
AGGCACGAGTACGCTCGTAACGACACCATGCACCACCGTCAACACACGGC
ACTACAGCAGCAGCAGCAGCAGAAGCTCTAACTACCTGTTTGCCCTCGTT
CGTTCGGACCTCTCGCCGCCGCCCCCCCCCCCCGGCGGTTTCTCGAACAC
CCAGCATCCTGGAGGACCCCGTGATGCTGCCGTGCAACCACCCCCTGTGC
CGAGGCTGCGCTTCGCAGTGCTTCAAGGAGAGCCAGCGGTGCCCTCAGTG
CATGACCCCCATCCCCAACCTGCGGATGCTCCAGGGGCGAAACAAGTGGA
TCGTGCACATGGTCGACAAGCTAAAGAACTCTATCAACCACGTCGGGGTT
AGCCTCACGCAGCACGCGCCAGGTCAGTCTTTTTCCGTCGTTTTTTGCTG
TTGGCGCGCGAGGTACGGCGGTGCCCCGCGCTGTTGCGGTGTCGTAGAGT
TGTAAAGGAGTTGCGGTTCGGACGCGGTTGTAGAGACTCTTGAAAACGGG
CTCCCGAACGCGTCACGACTGCTGTTGGAGGTGGCTCGAAATCACGACGG
ACTTACATACAAACAATGCAAGTGGTGCCTCTCTCATTCTTTATGCCGGG
GTCACGTCTGTTGGTCACCCCACCCCCCTTAATCTCCCTCTTCCCCGTCG
CCCCTTGCCAGTCCCATCCAAGTACCGGGACAAGCCGCCACCAAAGTCGG
GGGCCGCGGGCAAGGCTGCGCGCGATCGAGCGCGGGCGCGGGCATCCACG
GGAGAAGCCGGTCTTCCTTCGGCGAGCTGCGGGAGCGGAGGCGGCGGCAG
CGGGGGCGGCCGTCGCGGGCGAGGCAAGGCAAGGCAAACGGGAAGGGCCA
GCGCCGGCGGGAGTAGAGGGGGAGCGGCGGCTGCGGCTCCGGCTGCGGCG
GCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1525:9445..11697-

>mRNA_E-siliculosus-1a_F_contig1525.3039.1 ID=mRNA_E-siliculosus-1a_F_contig1525.3039.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3039.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1206bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1525:9445..11697- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTCATGTGGATGGCCTTGCTGGGCCAGGCGCGGGGAAAATTGCGAG
GCAAGCGCCCGAGAGTATAGGGTCGGTTGCAGATTTCATCGAGATCGTGA
AGGAAACGGCTGGCAAGCACTTCAAGTGCTGCATTTGTTTCAGATGGCTC
ATGTGGATGGCCTTGCTGGGCCAGGCGCGGGGAAAATTGCGAGGCAAGCG
CCCGAGAGTATAGGGTCGGTTGCAGATTTCATCGAGATCGTGAAGGAAAC
GGCTGGCAAGCACTTCAAGTGCTGCATTTGTTTCAGCATCCTGGAGGACC
CCGTGATGCTGCCGTGCAACCACCCCCTGTGCCGAGGCTGCGCTTCGCAG
TGCTTCAAGGAGAGCCAGCGGTGCCCTCAGTGCATGACCCCCATCCCCAA
CCTGCGGATGCTCCAGGGGCGAAACAAGTGGATCGTGCACATGGTCGACA
AGCTAAAGAACTCTATCAACCACGTCGGGGTTAGCCTCACGCAGCACGCG
CCAGCATCCTGGAGGACCCCGTGATGCTGCCGTGCAACCACCCCCTGTGC
CGAGGCTGCGCTTCGCAGTGCTTCAAGGAGAGCCAGCGGTGCCCTCAGTG
CATGACCCCCATCCCCAACCTGCGGATGCTCCAGGGGCGAAACAAGTGGA
TCGTGCACATGGTCGACAAGCTAAAGAACTCTATCAACCACGTCGGGGTT
AGCCTCACGCAGCACGCGCCAGTCCCATCCAAGTACCGGGACAAGCCGCC
ACCAAAGTCGGGGGCCGCGGGCAAGGCTGCGCGCGATCGAGCGCGGGCGC
GGGCATCCACGGGAGAAGCCGGTCTTCCTTCGGCGAGCTGCGGGAGCGGA
GGCGGCGGCAGCGGGGGCGGCCGTCGCGGGCGAGGCAAGGCAAGGCAAAC
GGGAAGGGCCAGCGCCGGCGGGAGTAGAGGGGGAGCGGCGGCTGCGGCTC
CGGCTGCGGCGGCTTCCCATCCAAGTACCGGGACAAGCCGCCACCAAAGT
CGGGGGCCGCGGGCAAGGCTGCGCGCGATCGAGCGCGGGCGCGGGCATCC
ACGGGAGAAGCCGGTCTTCCTTCGGCGAGCTGCGGGAGCGGAGGCGGCGG
CAGCGGGGGCGGCCGTCGCGGGCGAGGCAAGGCAAGGCAAACGGGAAGGG
CCAGCGCCGGCGGGAGTAGAGGGGGAGCGGCGGCTGCGGCTCCGGCTGCG
GCGGCT
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