mRNA_E-siliculosus-1a_F_contig1525.3038.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1525.3038.1
Unique NamemRNA_E-siliculosus-1a_F_contig1525.3038.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1525.3038.1 vs. uniprot
Match: A0A6H5KV73_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV73_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.210e-11
Identity = 54/97 (55.67%), Postives = 56/97 (57.73%), Query Frame = 3 
Query:    6 GGAAEEDGPERDRAPGGVAAPVALAAISASSRASSAPADPPPAGTGDDAAGSRGEEGRGADARHRGGADDEHYHDDAREGSCHSDTASSDNGGGEGL 296
            GGAAEEDGPERDRAPG VAAPVALAA                                     HR GADDEH H+DAREGSCHSD ASS+NGGGEGL
Sbjct:  332 GGAAEEDGPERDRAPG-VAAPVALAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGADDEHGHNDAREGSCHSDKASSENGGGEGL 427
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV73_9PHAE1.210e-1155.67BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1525contigE-siliculosus-1a_F_contig1525:8547..8843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size297
Model size297
Exons1
Ec32 orthologEc-06_004770.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928034.0003984-CDS-E-siliculosus-1a_F_contig1525:8546..88431622928034.0003984-CDS-E-siliculosus-1a_F_contig1525:8546..8843Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 8547..8843 -
1696318781.5209825-CDS-E-siliculosus-1a_F_contig1525:8546..88431696318781.5209825-CDS-E-siliculosus-1a_F_contig1525:8546..8843Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1525 8547..8843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1525.3038.1prot_E-siliculosus-1a_F_contig1525.3038.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1525 8547..8843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1525.3038.1

>prot_E-siliculosus-1a_F_contig1525.3038.1 ID=prot_E-siliculosus-1a_F_contig1525.3038.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3038.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=99bp
IGVERPKRTAPRGIGPRVVWLLLLRLRRSLPLHVLLLLPRTPLLPVLGMM
QREAEERRDVEQMLDIEAVPTTSITTTMLERVRVTRIRHRLITAGGRA*
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mRNA from alignment at E-siliculosus-1a_F_contig1525:8547..8843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1525.3038.1 ID=mRNA_E-siliculosus-1a_F_contig1525.3038.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3038.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=297bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1525:8547..8843- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTGGGGTGGAGCGGCCGAAGAGGACGGCCCCGAGAGGGATCGGGCCCCG
GGTGGTGTGGCTGCTCCTGTTGCGCTTGCGGCGATCTCTGCCTCTTCACG
TGCTTCTTCTGCTCCCGCGGACCCCCCTCCTGCCGGTACTGGGGATGATG
CAGCGGGAAGCAGAGGAGAGGAGGGACGTGGAGCAGATGCTCGACATCGA
GGCGGTGCCGACGACGAGCATTACCACGACGATGCTAGAGAGGGTTCGTG
TCACTCGGATACGGCATCGTCTGATAACGGCGGGGGGGAGGGCTTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1525:8547..8843-

>mRNA_E-siliculosus-1a_F_contig1525.3038.1 ID=mRNA_E-siliculosus-1a_F_contig1525.3038.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3038.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1525:8547..8843- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTGGGGTGGAGCGGCCGAAGAGGACGGCCCCGAGAGGGATCGGGCCCCG
GGTGGTGTGGCTGCTCCTGTTGCGCTTGCGGCGATCTCTGCCTCTTCACG
TGCTTCTTCTGCTCCCGCGGACCCCCCTCCTGCCGGTACTGGGGATGATG
CAGCGGGAAGCAGAGGAGAGGAGGGACGTGGAGCAGATGCTCGACATCGA
GGCGGTGCCGACGACGAGCATTACCACGACGATGCTAGAGAGGGTTCGTG
TCACTCGGATACGGCATCGTCTGATAACGGCGGGGGGGAGGGCTTAGATT
GGGGTGGAGCGGCCGAAGAGGACGGCCCCGAGAGGGATCGGGCCCCGGGT
GGTGTGGCTGCTCCTGTTGCGCTTGCGGCGATCTCTGCCTCTTCACGTGC
TTCTTCTGCTCCCGCGGACCCCCCTCCTGCCGGTACTGGGGATGATGCAG
CGGGAAGCAGAGGAGAGGAGGGACGTGGAGCAGATGCTCGACATCGAGGC
GGTGCCGACGACGAGCATTACCACGACGATGCTAGAGAGGGTTCGTGTCA
CTCGGATACGGCATCGTCTGATAACGGCGGGGGGGAGGGCTTAG
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