mRNA_E-siliculosus-1a_F_contig15248.3035.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: A0A125RM70_PSEFL (RspD n=6 Tax=Pseudomonas TaxID=286 RepID=A0A125RM70_PSEFL) HSP 1 Score: 135 bits (340), Expect = 6.530e-37 Identity = 69/178 (38.76%), Postives = 99/178 (55.62%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRASDTLADIALADKAHLHHLLKLAAATCEPMQDF-SLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQAIPRLSVSAKKLDTFWQAMVWRLHQS 531
M E+ W RWW AW EAD W S L L++ Q LA+ +H +L R +G++ P + S L + L +L A+TC P+ +L ++ WCER A+ L+PG W+E QDPL LLR W+ E +W+R RL F RDRI ++++ A KL+T WQ+ W+ QS
Sbjct: 1 MTAEIEWVRWWSQAWREADRDWYSSTLCLLTAPQIDALARGHHAALARSFGMTPCMPPQPSPALQSLFCGTPRTLFLACELVASTCAPLTATPALSTQDRAWCERTAKALRPGHWLEQGQDPLALLRAWL-GERVWERARLAFPRDRIIAIESVSAPQPPAAKLNTLWQSACWKAEQS 177
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: G8Q3R6_PSEO1 (HrpD, rspD n=22 Tax=Pseudomonadaceae TaxID=135621 RepID=G8Q3R6_PSEO1) HSP 1 Score: 134 bits (336), Expect = 2.620e-36 Identity = 70/178 (39.33%), Postives = 96/178 (53.93%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRASDTLADIALADKAHLHHLLKLAAATCEPMQDF-SLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQAIPRLSVSAKKLDTFWQAMVWRLHQS 531
M E+ W RWW AW EAD W S L L++ Q LA+ H +L R +G++ P S L + L +L A+TC P+ +L ++ WCER A+ L+PG W+E QDPL LLR W+ A W+R RL F RDRI +++ P A KL+T WQ+ W+ QS
Sbjct: 1 MTAEIAWVRWWNLAWREADRDWYSSALCLLTAPQIDALARGQHAALARSFGMTPCTPPPPSPALQSLFCGTPPALALACELVASTCAPLTATQALSAQDRAWCERTAKALRPGHWLEQDQDPLALLRAWLGERA-WERARLAFPRDRIIAIESAPAPQPPAAKLNTLWQSACWKAEQS 177
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: UPI001904F745 (hypothetical protein n=1 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI001904F745) HSP 1 Score: 130 bits (328), Expect = 4.310e-35 Identity = 71/178 (39.89%), Postives = 96/178 (53.93%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRASDTLADIALADKAHLHHLLKLAAATCEPMQDF-SLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQAIPRLSVSAKKLDTFWQAMVWRLHQS 531
MN EL W WW +A A W+P++L +S LA+ H L R G++ PCR TL + L L +L A TC P+ + L E+ WCER A+ L+PGQW+E +QD L LLR W+D WQR RL F R RIE V+ P +A +LDT W++ W+ +S
Sbjct: 1 MNEELQWIHWWHYAASRAGTDWLPTDLQRLSAPHLNALAQARHAVLARRLGVAPCQPCRPEPTLLAL-LCVPGTLALACELVAITCSPLSESCGLSAEERSWCERTAKALRPGQWLEPRQDSLALLRAWLDAPT-WQRVRLSFARTRIEAVERSPAPQAAANRLDTLWRSACWKAGRS 176
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: UPI00034732EE (hypothetical protein n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=UPI00034732EE) HSP 1 Score: 129 bits (324), Expect = 1.630e-34 Identity = 66/178 (37.08%), Postives = 93/178 (52.25%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRASDTLADIALADKAHLHHLLKLAAATCEPMQ-DFSLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQAIPRLSVSAKKLDTFWQAMVWRLHQS 531
MN L W RWW AW EAD W P L L++ Q LA+ +H +L R +G++ P ++ + LH +L A TC P+ L ++ WCER A+ L+PG W+E QD L LLR W++ E W+R RL F RI +++ P KL+T WQ+ W+ QS
Sbjct: 1 MNATLDWVRWWSLAWREADRDWYPPALRLLTAPQLDALARAHHAALARRFGITPCTPPPPDPSVLSLCCGTPRILHLACRLVANTCSPLTVSDELSPQDQAWCERTAKALRPGHWLEQGQDSLALLRAWLE-ERTWERVRLAFPHSRIVALESQPTPRPPVAKLNTLWQSACWKAEQS 177
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: J2XWI9_PSEFL (Putative type III secretion protein RspD n=1 Tax=Pseudomonas fluorescens Q2-87 TaxID=1038922 RepID=J2XWI9_PSEFL) HSP 1 Score: 129 bits (324), Expect = 1.670e-34 Identity = 67/178 (37.64%), Postives = 96/178 (53.93%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRASDTLADIALADKAHLHHLLKLAAATCEPMQDF-SLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQAIPRLSVSAKKLDTFWQAMVWRLHQS 531
M+ L WARWW AW EAD W P L L+S LA+ +H ++ R +G++ P + + + + L +L A TC P+ +L ++ WCER A+ L+PG W+E QDPL LLR W+ E W+R RL F R RI +Q++P A KL+T W + W+ QS
Sbjct: 1 MSTALEWARWWSQAWREADSDWYPPTLCLLSAAHLDALARGHHGAIARSFGITPCLPPQPNPAVQSLLCGTPQALPLACELVATTCSPLTATDALSPQDRAWCERTAKALRPGHWLEQGQDPLALLRAWL-GERTWERARLAFPRARIIALQSLPAPQPPASKLNTLWLSACWKAEQS 177
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: A0A0B1Z1Z8_9PSED (Type III secretion protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A0B1Z1Z8_9PSED) HSP 1 Score: 128 bits (322), Expect = 3.260e-34 Identity = 67/178 (37.64%), Postives = 93/178 (52.25%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRASDTLADIALADKAHLHHLLKLAAATCEPMQ-DFSLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQAIPRLSVSAKKLDTFWQAMVWRLHQS 531
M L W RWW AW EAD W P L L++ Q LA+ +H +L R +G++ P + S ++ + +H +L A TC P L ++ WCER A+ L+PG W+E QD L LLR W+ E W+R RL F R RI +Q+ P KL+T WQ+ W+ QS
Sbjct: 1 MKTALDWVRWWSHAWREADPDWYPPALRLLTAAQMDALARGHHAALARSFGITPCMPPQPSPSVLSLCCGTPRTVHLACQLVANTCSPSTASDELCPQDRAWCERTAKALRPGHWLEQGQDSLALLRAWL-GERTWERARLAFPRSRIIALQSQPSPQAPGAKLNTLWQSACWKAEQS 177
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: A0A176NL95_9PSED (Type III secretion protein n=3 Tax=Pseudomonas thivervalensis TaxID=86265 RepID=A0A176NL95_9PSED) HSP 1 Score: 128 bits (321), Expect = 4.730e-34 Identity = 66/178 (37.08%), Postives = 94/178 (52.81%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRASDTLADIALADKAHLHHLLKLAAATCEPMQDF-SLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQAIPRLSVSAKKLDTFWQAMVWRLHQS 531
M E+ W RWW W EAD W P + ++ Q LA+ +H +L R +G++ P S L + L +L A+TC P+ +L ++ WCER A+ L+PG W+E QDPL LLR W+ A W+R RL F R RI +++ P A KL+T WQ+ W+ QS
Sbjct: 1 MTAEIEWVRWWSHPWREADRDWYPLSICRLTAPQIDTLARGHHAALARSFGMTPCTPPPPSPMLQSLFCGTPRTLLLACELVASTCSPLTATQALSAQDRAWCERTAKALRPGHWLEHSQDPLALLRAWLGERA-WERARLAFPRSRIIAIESAPAPQPPATKLNTLWQSACWKAEQS 177
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: A0A1H8JT45_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A1H8JT45_9PSED) HSP 1 Score: 127 bits (318), Expect = 1.340e-33 Identity = 69/181 (38.12%), Postives = 100/181 (55.25%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRA---SDTLADIALADKAHLHHLLKLAAATCEPMQDF-SLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQAIPRLSVSAKKLDTFWQAMVWRLHQS 531
M+ L WARWW AW EAD W P L L++ +Q LA+ +H +L R +G++ PC A + ++ + L +L A TC P +L ++ WCER A+ L+PG W+E QDPL LLR W+D W+R RL F R RI+ ++++P A KL+ WQ+ W+ QS
Sbjct: 1 MSVALEWARWWNHAWREADRDWYPPILRLLTERQIDALARGHHAALARSFGMT---PCTAPKPTPSVQSLCCGTPRTLSLACQLVANTCSPSTTTGTLSAQDRAWCERTAKALRPGHWLELGQDPLVLLRAWLDVRT-WERARLAFPRSRIDAIESLPAPQPPAAKLNMLWQSASWKAEQS 177
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: UPI0008E63AA3 (type III secretion protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI0008E63AA3) HSP 1 Score: 123 bits (308), Expect = 4.260e-32 Identity = 67/178 (37.64%), Postives = 92/178 (51.69%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRASDTLADIALADKAHLHHLLKLAAATCEPMQDF-SLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQAIPRLSVSAKKLDTFWQAMVWRLHQS 531
M+ L W RWW AW AD W P L + + LA+ +H +L +G++ P R + L + L +L A TC P+ +L ++ WCER A+ L+PG W+E DPL LLR W+ A WQR RL F RDRI ++ +P A KLDT WQ+ W+ QS
Sbjct: 1 MSEALEWVRWWNHAWRAADREWYPPGLDRLPASRLDALARGHHAALALSFGITPCPPPRPNPVLQSLLCGAPQTLALACELVAITCSPLTATQALSPPDRAWCERTAKALRPGHWLEQGHDPLVLLRTWLGTLA-WQRARLAFPRDRIIALEGLPVPQPPAAKLDTLWQSACWKAEQS 177
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Match: A0A0G3G726_9PSED (Type III secretion protein n=4 Tax=Pseudomonas TaxID=286 RepID=A0A0G3G726_9PSED) HSP 1 Score: 123 bits (308), Expect = 4.610e-32 Identity = 69/180 (38.33%), Postives = 97/180 (53.89%), Query Frame = 1
Query: 1 MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYGLSAHFPCRASDTLADIALADKAHLHHLLKLAAATCEPMQDF-SLDEHEKQWCERIARGLKPGQWVEGQQDPLCLLRQWIDNEAIWQRFRLRFQRDRIELVQA--IPRLSVSAKKLDTFWQAMVWRLHQS 531
M+ L W WW AW +A W P +L+ +S + LA+ +H +L R +G++ P R S + A A L +L A TC P+ +L ++ WCER A+ L+PG W+E QDPL LLR W+D E WQR RL F R RI ++ P+ A +LDT WQ+ W+ QS
Sbjct: 1 MSAALEWVHWWHHAWRQATPEWQPPDLARLSASRLDALARGHHATLARRFGMTPCTPPRPSPAQQALLCAPAA-LALACELVATTCSPLTATPALSAQDRAWCERTAKALRPGHWLEPDQDPLALLRAWLD-EPTWQRARLAFPRARIMAIECSTAPQPQPPAARLDTLWQSACWKAGQS 178 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15248.3035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig15248.3035.1 >prot_E-siliculosus-1a_F_contig15248.3035.1 ID=prot_E-siliculosus-1a_F_contig15248.3035.1|Name=mRNA_E-siliculosus-1a_F_contig15248.3035.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=179bp MNRELLWARWWCFAWLEADESWVPSELSLVSPQQRQHLAKVYHQSLGRLYback to top mRNA from alignment at E-siliculosus-1a_F_contig15248:246..782- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig15248.3035.1 ID=mRNA_E-siliculosus-1a_F_contig15248.3035.1|Name=mRNA_E-siliculosus-1a_F_contig15248.3035.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=537bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15248:246..782- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15248:246..782- >mRNA_E-siliculosus-1a_F_contig15248.3035.1 ID=mRNA_E-siliculosus-1a_F_contig15248.3035.1|Name=mRNA_E-siliculosus-1a_F_contig15248.3035.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15248:246..782- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |