mRNA_E-siliculosus-1a_F_contig15246.3034.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15246.3034.1
Unique NamemRNA_E-siliculosus-1a_F_contig15246.3034.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A4V2JAE0_9FLAO (L-alanine-DL-glutamate epimerase n=2 Tax=Hyunsoonleella TaxID=1080193 RepID=A0A4V2JAE0_9FLAO)

HSP 1 Score: 136 bits (342), Expect = 8.030e-36
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1
Query:    1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
            L MTMKIAQAA+ER+IPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGL+ESNGHQNYKNWK ML
Sbjct:  355 LSMTMKIAQAAYERNIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLVESNGHQNYKNWKIML 421          
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A3S5JMD6_9FLAO (L-alanine-DL-glutamate epimerase (Fragment) n=1 Tax=Flavobacteriales bacterium TMED235 TaxID=1986726 RepID=A0A3S5JMD6_9FLAO)

HSP 1 Score: 126 bits (317), Expect = 1.000e-33
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1
Query:    1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
            L MTMKIA AAH+R+IPCFCADLTVNPIL+EWNKNVAARLK FPGM NLGLIESNGHQNYKNW+ M+
Sbjct:  157 LSMTMKIALAAHKRNIPCFCADLTVNPILIEWNKNVAARLKSFPGMNNLGLIESNGHQNYKNWEKMM 223          
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A842ZFL4_9ARCH (MR_MLE_C domain-containing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A842ZFL4_9ARCH)

HSP 1 Score: 125 bits (313), Expect = 1.420e-33
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
            L MTMKIAQ A+ER+IPCFCADLTVNP+LVEWNKNVAARL  FPG+GNLGL+ESNGHQNYKNW  M+
Sbjct:  115 LSMTMKIAQTAYERNIPCFCADLTVNPVLVEWNKNVAARLASFPGIGNLGLVESNGHQNYKNWSNMM 181          
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A3D6DIP8_9FLAO (L-alanine-DL-glutamate epimerase n=2 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A3D6DIP8_9FLAO)

HSP 1 Score: 130 bits (326), Expect = 1.640e-33
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1
Query:    1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
            L MTMKIAQ AHER+IPCFCADLTVNPIL+EWNKNVAARLK FPGM NLGL+ESNGHQNYKNWK M+
Sbjct:  355 LSMTMKIAQVAHERNIPCFCADLTVNPILIEWNKNVAARLKSFPGMNNLGLLESNGHQNYKNWKEMM 421          
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A352Z246_9BACT (L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352Z246_9BACT)

HSP 1 Score: 129 bits (324), Expect = 3.150e-33
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTMLG 204
            L MTMKIAQAAHER+ PCFCADLTVNP+LVEWNKNVAARL  FPG+GNLGL+ESNGHQNY NW TMLG
Sbjct:  354 LSMTMKIAQAAHERNTPCFCADLTVNPVLVEWNKNVAARLASFPGIGNLGLVESNGHQNYLNWNTMLG 421          
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A352YU29_9BACT (L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352YU29_9BACT)

HSP 1 Score: 128 bits (322), Expect = 7.270e-33
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1
Query:    1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
            L MTMKIAQAA+ER IPCFCADLTVNP+LVEWNKNVAARL  FPG+GNLGL+ESNGHQNYKNW TML
Sbjct:  367 LSMTMKIAQAAYERKIPCFCADLTVNPVLVEWNKNVAARLASFPGIGNLGLVESNGHQNYKNWNTML 433          
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A524NJQ3_9BACT (Uncharacterized protein n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=A0A524NJQ3_9BACT)

HSP 1 Score: 119 bits (297), Expect = 1.360e-32
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query:    7 MTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
            MTMKIAQAAHER +PCFCADLTVNPILVEWNK +A RL PFPG+G LGL+E+NGHQNYKNW+TM+
Sbjct:    1 MTMKIAQAAHERGVPCFCADLTVNPILVEWNKAIACRLAPFPGLG-LGLLETNGHQNYKNWETMV 64          
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A399SYY3_9BACT (L-alanine-DL-glutamate epimerase n=4 Tax=Prolixibacteraceae TaxID=1471398 RepID=A0A399SYY3_9BACT)

HSP 1 Score: 126 bits (316), Expect = 4.150e-32
Identity = 53/70 (75.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query:    1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTMLGII 210
            L MTMKIA+AA +RD+PCFCADLTVNP+LVEWN+N+AARLKPFPG+ NLGL+ESNGHQNY+NW+ M+G +
Sbjct:  349 LSMTMKIAKAATDRDVPCFCADLTVNPVLVEWNRNIAARLKPFPGLQNLGLLESNGHQNYRNWEKMMGYL 418          
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A354BRC3_9BACT (L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A354BRC3_9BACT)

HSP 1 Score: 126 bits (316), Expect = 4.400e-32
Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTM 198
            L MTMKIAQAA+E++IPCFCADLTVNPIL+EWNKNVAARL  FPG+GNLGL+ESNGHQNYKNW TM
Sbjct:  353 LSMTMKIAQAAYEKEIPCFCADLTVNPILIEWNKNVAARLASFPGIGNLGLVESNGHQNYKNWGTM 418          
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A7X9I821_9BACT (L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X9I821_9BACT)

HSP 1 Score: 125 bits (315), Expect = 6.120e-32
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = 1
Query:    1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
            L MT+KIAQAA+ER +PCFCADLTVNPIL+EWNKNVAARL+ FPG+GNLGL+ESNGHQNYKNW+ M+
Sbjct:  353 LSMTLKIAQAAYERKVPCFCADLTVNPILIEWNKNVAARLESFPGLGNLGLVESNGHQNYKNWQAMM 419          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4V2JAE0_9FLAO8.030e-3692.54L-alanine-DL-glutamate epimerase n=2 Tax=Hyunsoonl... [more]
A0A3S5JMD6_9FLAO1.000e-3385.07L-alanine-DL-glutamate epimerase (Fragment) n=1 Ta... [more]
A0A842ZFL4_9ARCH1.420e-3382.09MR_MLE_C domain-containing protein n=1 Tax=Candida... [more]
A0A3D6DIP8_9FLAO1.640e-3386.57L-alanine-DL-glutamate epimerase n=2 Tax=Flavobact... [more]
A0A352Z246_9BACT3.150e-3385.29L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroid... [more]
A0A352YU29_9BACT7.270e-3386.57L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroid... [more]
A0A524NJQ3_9BACT1.360e-3281.54Uncharacterized protein n=1 Tax=Bacteroidia bacter... [more]
A0A399SYY3_9BACT4.150e-3275.71L-alanine-DL-glutamate epimerase n=4 Tax=Prolixiba... [more]
A0A354BRC3_9BACT4.400e-3284.85L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroid... [more]
A0A7X9I821_9BACT6.120e-3280.60L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15246contigE-siliculosus-1a_F_contig15246:1..335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size228
Model size335
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelCytophagia
COG Functional cat.M
EggNOG OGs47MTW@768503,4NFH1@976,COG4948@1,COG4948@2
EggNOG free text desc.Enolase C-terminal domain-like
Seed eggNOG ortholog1288963.ADIS_1344
Seed ortholog evalue8.9e-23
Seed ortholog score112.5
Taxonomic scopeBacteria
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15246.3034.1prot_E-siliculosus-1a_F_contig15246.3034.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15246 7..234 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928033.525476-UTR-E-siliculosus-1a_F_contig15246:0..61622928033.525476-UTR-E-siliculosus-1a_F_contig15246:0..6Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15246 1..6 +
1696318781.4058406-UTR-E-siliculosus-1a_F_contig15246:0..61696318781.4058406-UTR-E-siliculosus-1a_F_contig15246:0..6Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15246 1..6 +
1622928033.7841246-UTR-E-siliculosus-1a_F_contig15246:234..3351622928033.7841246-UTR-E-siliculosus-1a_F_contig15246:234..335Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15246 235..335 +
1696318781.423088-UTR-E-siliculosus-1a_F_contig15246:234..3351696318781.423088-UTR-E-siliculosus-1a_F_contig15246:234..335Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15246 235..335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928033.7716415-CDS-E-siliculosus-1a_F_contig15246:6..2341622928033.7716415-CDS-E-siliculosus-1a_F_contig15246:6..234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15246 7..234 +
1696318781.4153605-CDS-E-siliculosus-1a_F_contig15246:6..2341696318781.4153605-CDS-E-siliculosus-1a_F_contig15246:6..234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15246 7..234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15246.3034.1

>prot_E-siliculosus-1a_F_contig15246.3034.1 ID=prot_E-siliculosus-1a_F_contig15246.3034.1|Name=mRNA_E-siliculosus-1a_F_contig15246.3034.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp
MTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLI
ESNGHQNYKNWKTMLGIIHIRMPLG*
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mRNA from alignment at E-siliculosus-1a_F_contig15246:1..335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15246.3034.1 ID=mRNA_E-siliculosus-1a_F_contig15246.3034.1|Name=mRNA_E-siliculosus-1a_F_contig15246.3034.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=335bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15246:1..335+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGAGAATGACCATGAAAATCGCCCAGGCGGCCCATGAACGCGATATTCC CTGTTTCTGCGCTGACCTGACGGTCAACCCGATATTGGTCGAGTGGAATA AAAATGTGGCAGCACGACTAAAGCCGTTTCCGGGAATGGGAAATCTAGGG CTCATTGAAAGTAATGGCCATCAGAACTATAAAAACTGGAAAACCATGTT GGGTATCATCCACATCAGAATGCCGCTTGGGTAAACGCAAAAAATGGGGT CTACGAGCTAAACGATGATTTCTACGTAAAAAGTGGCGGCATTTTTGACC GCTCAGAACACTATGAAAGCATGTTTGCAAAGCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15246:1..335+

>mRNA_E-siliculosus-1a_F_contig15246.3034.1 ID=mRNA_E-siliculosus-1a_F_contig15246.3034.1|Name=mRNA_E-siliculosus-1a_F_contig15246.3034.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15246:1..335+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCATGAAAATCGCCCAGGCGGCCCATGAACGCGATATTCCCTGTTT
CTGCGCTGACCTGACGGTCAACCCGATATTGGTCGAGTGGAATAAAAATG
TGGCAGCACGACTAAAGCCGTTTCCGGGAATGGGAAATCTAGGGCTCATT
GAAAGTAATGGCCATCAGAACTATAAAAACTGGAAAACCATGTTGGGTAT
CATCCACATCAGAATGCCGCTTGGGTAAATGACCATGAAAATCGCCCAGG
CGGCCCATGAACGCGATATTCCCTGTTTCTGCGCTGACCTGACGGTCAAC
CCGATATTGGTCGAGTGGAATAAAAATGTGGCAGCACGACTAAAGCCGTT
TCCGGGAATGGGAAATCTAGGGCTCATTGAAAGTAATGGCCATCAGAACT
ATAAAAACTGGAAAACCATGTTGGGTATCATCCACATCAGAATGCCGCTT
GGGTAA
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