mRNA_E-siliculosus-1a_F_contig15246.3034.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A4V2JAE0_9FLAO (L-alanine-DL-glutamate epimerase n=2 Tax=Hyunsoonleella TaxID=1080193 RepID=A0A4V2JAE0_9FLAO) HSP 1 Score: 136 bits (342), Expect = 8.030e-36 Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1
Query: 1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
L MTMKIAQAA+ER+IPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGL+ESNGHQNYKNWK ML
Sbjct: 355 LSMTMKIAQAAYERNIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLVESNGHQNYKNWKIML 421
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A3S5JMD6_9FLAO (L-alanine-DL-glutamate epimerase (Fragment) n=1 Tax=Flavobacteriales bacterium TMED235 TaxID=1986726 RepID=A0A3S5JMD6_9FLAO) HSP 1 Score: 126 bits (317), Expect = 1.000e-33 Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1
Query: 1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
L MTMKIA AAH+R+IPCFCADLTVNPIL+EWNKNVAARLK FPGM NLGLIESNGHQNYKNW+ M+
Sbjct: 157 LSMTMKIALAAHKRNIPCFCADLTVNPILIEWNKNVAARLKSFPGMNNLGLIESNGHQNYKNWEKMM 223
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A842ZFL4_9ARCH (MR_MLE_C domain-containing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A842ZFL4_9ARCH) HSP 1 Score: 125 bits (313), Expect = 1.420e-33 Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1
Query: 1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
L MTMKIAQ A+ER+IPCFCADLTVNP+LVEWNKNVAARL FPG+GNLGL+ESNGHQNYKNW M+
Sbjct: 115 LSMTMKIAQTAYERNIPCFCADLTVNPVLVEWNKNVAARLASFPGIGNLGLVESNGHQNYKNWSNMM 181
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A3D6DIP8_9FLAO (L-alanine-DL-glutamate epimerase n=2 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A3D6DIP8_9FLAO) HSP 1 Score: 130 bits (326), Expect = 1.640e-33 Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1
Query: 1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
L MTMKIAQ AHER+IPCFCADLTVNPIL+EWNKNVAARLK FPGM NLGL+ESNGHQNYKNWK M+
Sbjct: 355 LSMTMKIAQVAHERNIPCFCADLTVNPILIEWNKNVAARLKSFPGMNNLGLLESNGHQNYKNWKEMM 421
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A352Z246_9BACT (L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352Z246_9BACT) HSP 1 Score: 129 bits (324), Expect = 3.150e-33 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTMLG 204
L MTMKIAQAAHER+ PCFCADLTVNP+LVEWNKNVAARL FPG+GNLGL+ESNGHQNY NW TMLG
Sbjct: 354 LSMTMKIAQAAHERNTPCFCADLTVNPVLVEWNKNVAARLASFPGIGNLGLVESNGHQNYLNWNTMLG 421
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A352YU29_9BACT (L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352YU29_9BACT) HSP 1 Score: 128 bits (322), Expect = 7.270e-33 Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1
Query: 1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
L MTMKIAQAA+ER IPCFCADLTVNP+LVEWNKNVAARL FPG+GNLGL+ESNGHQNYKNW TML
Sbjct: 367 LSMTMKIAQAAYERKIPCFCADLTVNPVLVEWNKNVAARLASFPGIGNLGLVESNGHQNYKNWNTML 433
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A524NJQ3_9BACT (Uncharacterized protein n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=A0A524NJQ3_9BACT) HSP 1 Score: 119 bits (297), Expect = 1.360e-32 Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query: 7 MTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
MTMKIAQAAHER +PCFCADLTVNPILVEWNK +A RL PFPG+G LGL+E+NGHQNYKNW+TM+
Sbjct: 1 MTMKIAQAAHERGVPCFCADLTVNPILVEWNKAIACRLAPFPGLG-LGLLETNGHQNYKNWETMV 64
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A399SYY3_9BACT (L-alanine-DL-glutamate epimerase n=4 Tax=Prolixibacteraceae TaxID=1471398 RepID=A0A399SYY3_9BACT) HSP 1 Score: 126 bits (316), Expect = 4.150e-32 Identity = 53/70 (75.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTMLGII 210
L MTMKIA+AA +RD+PCFCADLTVNP+LVEWN+N+AARLKPFPG+ NLGL+ESNGHQNY+NW+ M+G +
Sbjct: 349 LSMTMKIAKAATDRDVPCFCADLTVNPVLVEWNRNIAARLKPFPGLQNLGLLESNGHQNYRNWEKMMGYL 418
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A354BRC3_9BACT (L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A354BRC3_9BACT) HSP 1 Score: 126 bits (316), Expect = 4.400e-32 Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1
Query: 1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTM 198
L MTMKIAQAA+E++IPCFCADLTVNPIL+EWNKNVAARL FPG+GNLGL+ESNGHQNYKNW TM
Sbjct: 353 LSMTMKIAQAAYEKEIPCFCADLTVNPILIEWNKNVAARLASFPGIGNLGLVESNGHQNYKNWGTM 418
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Match: A0A7X9I821_9BACT (L-alanine-DL-glutamate epimerase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X9I821_9BACT) HSP 1 Score: 125 bits (315), Expect = 6.120e-32 Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = 1
Query: 1 LRMTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIESNGHQNYKNWKTML 201
L MT+KIAQAA+ER +PCFCADLTVNPIL+EWNKNVAARL+ FPG+GNLGL+ESNGHQNYKNW+ M+
Sbjct: 353 LSMTLKIAQAAYERKVPCFCADLTVNPILIEWNKNVAARLESFPGLGNLGLVESNGHQNYKNWQAMM 419 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15246.3034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig15246.3034.1 >prot_E-siliculosus-1a_F_contig15246.3034.1 ID=prot_E-siliculosus-1a_F_contig15246.3034.1|Name=mRNA_E-siliculosus-1a_F_contig15246.3034.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp MTMKIAQAAHERDIPCFCADLTVNPILVEWNKNVAARLKPFPGMGNLGLIback to top mRNA from alignment at E-siliculosus-1a_F_contig15246:1..335+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig15246.3034.1 ID=mRNA_E-siliculosus-1a_F_contig15246.3034.1|Name=mRNA_E-siliculosus-1a_F_contig15246.3034.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=335bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15246:1..335+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15246:1..335+ >mRNA_E-siliculosus-1a_F_contig15246.3034.1 ID=mRNA_E-siliculosus-1a_F_contig15246.3034.1|Name=mRNA_E-siliculosus-1a_F_contig15246.3034.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15246:1..335+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |