|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 360 |
| Model size | 759 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog | Ec-06_007350.1 |
| Ec32 ortholog description | Hypothetical protein |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928032.805771-CDS-E-siliculosus-1a_F_contig1523:15409..15498 | 1622928032.805771-CDS-E-siliculosus-1a_F_contig1523:15409..15498 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1523 15410..15498 - |
| 1696318780.9183543-CDS-E-siliculosus-1a_F_contig1523:15409..15498 | 1696318780.9183543-CDS-E-siliculosus-1a_F_contig1523:15409..15498 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1523 15410..15498 - |
| 1622928032.8156946-CDS-E-siliculosus-1a_F_contig1523:16209..16480 | 1622928032.8156946-CDS-E-siliculosus-1a_F_contig1523:16209..16480 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1523 16210..16480 - |
| 1696318780.9333427-CDS-E-siliculosus-1a_F_contig1523:16209..16480 | 1696318780.9333427-CDS-E-siliculosus-1a_F_contig1523:16209..16480 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1523 16210..16480 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1523.3028.1 >prot_E-siliculosus-1a_F_contig1523.3028.1 ID=prot_E-siliculosus-1a_F_contig1523.3028.1|Name=mRNA_E-siliculosus-1a_F_contig1523.3028.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=120bp
MGVPLPERRSTGGGWISVGTARSGQVCANTCLVREKDQPEECRSTERPLV
HAGRTYALGATGRGGRRDAEQWRKLRRGRWWFCRVPHRRRGERGGQGVLV
GSDSPFSGVRMILGAAQIV* back to topmRNA from alignment at E-siliculosus-1a_F_contig1523:15275..17732- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1523.3028.1 ID=mRNA_E-siliculosus-1a_F_contig1523.3028.1|Name=mRNA_E-siliculosus-1a_F_contig1523.3028.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2458bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1523:15275..17732- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTGCGAGACGACGACAAGGCGCTGGATGAAACCAAAGGTAGGATCCGTT
CGGTACACTCACAATACTGCTGACCGCTGATAGCTCAGCTGCAACCACCT
GCTAGGAAATCGGTGCTGGTCGCAAGACTTAGTCTAGACTATTTGATGTT
GCCACATCGAAATTGTGCTCACCAGAGTAGCAGCACAGGGCGGCGCTCTC
GCCGTAGGTTAGGTTACAGAGAGTGTTAGTCGAGGCATTCTATATTTATA
TGCAGCCCATGAGCTGGAGAGTCGTCTGGTTGCGTCAGATCCTCAGATAC
GTGTAGCCAGCTGTGCGTGCTGCGACGTTGAAGAGGGGGCCCCGTGACGC
CGCAAGACGGCCCCGTAAGGGTCAGAAACACACATCCAGGTATCGAAAGA
TCAAGTAGAGGACCAGAATCTCGGTTGCATATGGTCCTACTTGCTGCTGT
CTGCACAGTCACCGAGTTTCGAGCCGAAAGACCGGATAATGCAAAAGTTA
TGTGTGGCACAAAAAATCCCCTACATACAGCAGTCCGCGGTAAGTGTACC
TGTAAGGGCGTTTTTTGTAACCGCTAAATCTTCAAATCTGCGTGCGAGAT
GGCTCAAACGATGGACCAGACAAATAGCGTTCACATGATCTAGAGTGCCT
AAACTAAATATAAGAAATGGCCTAGTTACGGCGTTTCCCCGTACTACTGC
TGTTGAAGCCTCCTTAATAGGGATTTAGTTTGGGTAAAATACAGCTCTCC
GCGGTTCCTTGGGTGTACACTCGGTACATACAGGAACGGGTGTTGCAGGT
GTAGTTCGTGACTTATGCGGTGTATCGCTGCTCCACGGCGTCGGAAAACA
ACTAAGAAGTCTATTACTGCACGAAATAACGAATAATATTACCCTACACA
CTATTGAGGTTGTTATTTTTCAAACTATAGCATTGAAATGTAAGCCTTAT
GTGTGCGACTGTTTCATGAGCAAGTAGCAAAACAATGGTCCCCATATTCC
TCAATATTTTCCTGTTATGTTGTCAGTTGCGCTTCTTTCAGATTTCTACG
ACCAAGCAGATAACCGGGGGTTGTTGGCTCAAGATTGCTAGCGTCGCGCT
TGTACTGGGGCTGGGTTAGCATATCCATCAAGCGCCCCACCTGCGCGGCG
GCACGAAGACTTGAGGATAGAGTATTTCGACAGCCCCAGTTCCGCCCTGG
AGGCAAGGCGGCGGTAGGGTTAGCGTTGCGTTCCGAGTTCCATGGGACAT
ATATGGGCGTGCCCTTGCCAGAGCGGAGGTCGACTGGCGGCGGATGGATC
TCAGTGGGCACCGCACGCAGTGGACAGGTGTGCGCAAACACCTGTCTAGT
ACGAGAGAAGGATCAGCCGGAGGAATGTAGGTCGACCGAGAGACCACTTG
TGCACGCCGGGCGGACCTATGCGTTGGGCGCCACTGGAAGGGGCGGAAGG
AGGGACGCCGAGCAGTGGCGGAAATTGCGGCGCGGGAGATGGTGGTTCTG
CCGTGTTCCACACCGTCGCCGAGGTACGTGGCCTTGTGATTTTCGTGTTC
ATTAGCATCAAATTTGCAGGAATGGGTGTTCACGGAGCGATTTTTTTATG
GAATTGGGGGTTTACTATCACTGCGCCTCGTGACCGTTCCAAATTATAAC
GACTGCTCTGTTGCTCTGTGACACACGAAACAAAAAAAAGGGTCCGCTCC
ATGAGCGTTTGCCCCCCACCGAACCGATAAAAAATGAATGCGTGCACATT
GGTGTTTTCGGTGTATGAACTACAACATCTTACTTCGCGAAACACACGTA
AAAAATCCGGAATGTTTCAGAATGACTTTGAATCATTTCGTCTTCTGATG
GTACACCGTCGACAAGGCCGCGGCCTCTCGCGGTTCATCCTCGGCAGCGT
ATTGACGAAATCACTCAGTGAATATATTCCGAACGGCGTACTGACCGTTC
CACTCCACTTCCGCGAAACAAATCTAACTCCTTGTGCAATTGCCCCGCGC
AGTTCCATGATCCCAGGAGAATAAAAAAGGGCCCGCTTTACTCCTTGACA
ACGTGAATAGCGAGACGCAAGACGCTCCGCGGTAGATTGCTACTCTATGA
ACACCGCTGGAAAATTTTGGTCATTATAGACCTCTTCATGCCAGTCCCTG
TACGTATCTAGTTGAATTTGGTTGTGACGGTACCCTAAATGCACTTCCTC
ACTTCGTCCTTGTCTTCGTCTCCACCGCAAACAGGCGAGCGAGGTGGTCA
AGGGGTTCTCGTAGGCTCCGACTCGCCTTTTTCGGGTGTGAGGATGATCC
TCGGAGCGGCTCAGATTGTATGAAGGACTGTTGGATGTGCACCAAGGTTC
ATACGGAATGAAGTGGGGGCCGGGTCTGTGATAAAACCGAATCCGGGTTT
TGCGGGTAGGATAGGCCACGTGTTCTGGCGATTTTCAGGAATGAATGCAT
TTTTTGGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1523:15275..17732- >mRNA_E-siliculosus-1a_F_contig1523.3028.1 ID=mRNA_E-siliculosus-1a_F_contig1523.3028.1|Name=mRNA_E-siliculosus-1a_F_contig1523.3028.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1523:15275..17732- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGTGCCCTTGCCAGAGCGGAGGTCGACTGGCGGCGGATGGATCTC
AGTGGGCACCGCACGCAGTGGACAGGTGTGCGCAAACACCTGTCTAGTAC
GAGAGAAGGATCAGCCGGAGGAATGTAGGTCGACCGAGAGACCACTTGTG
CACGCCGGGCGGACCTATGCGTTGGGCGCCACTGGAAGGGGCGGAAGGAG
GGACGCCGAGCAGTGGCGGAAATTGCGGCGCGGGAGATGGTGGTTCTGCC
GTGTTCCACACCGTCGCCGAGATGGGCGTGCCCTTGCCAGAGCGGAGGTC
GACTGGCGGCGGATGGATCTCAGTGGGCACCGCACGCAGTGGACAGGTGT
GCGCAAACACCTGTCTAGTACGAGAGAAGGATCAGCCGGAGGAATGTAGG
TCGACCGAGAGACCACTTGTGCACGCCGGGCGGACCTATGCGTTGGGCGC
CACTGGAAGGGGCGGAAGGAGGGACGCCGAGCAGTGGCGGAAATTGCGGC
GCGGGAGATGGTGGTTCTGCCGTGTTCCACACCGTCGCCGAGGCGAGCGA
GGTGGTCAAGGGGTTCTCGTAGGCTCCGACTCGCCTTTTTCGGGTGTGAG
GATGATCCTCGGAGCGGCTCAGATTGTATGAGCGAGCGAGGTGGTCAAGG
GGTTCTCGTAGGCTCCGACTCGCCTTTTTCGGGTGTGAGGATGATCCTCG
GAGCGGCTCAGATTGTATGA back to top
|