mRNA_E-siliculosus-1a_F_contig15202.3020.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15202.3020.1
Unique NamemRNA_E-siliculosus-1a_F_contig15202.3020.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: A0A7Y3CA76_9FLAO (DNA-directed RNA polymerase n=4 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A7Y3CA76_9FLAO)

HSP 1 Score: 600 bits (1548), Expect = 3.630e-212
Identity = 309/332 (93.07%), Postives = 322/332 (96.99%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRNL VAFMPWKGYNFEDAIVISEKVVREDIFTSIH+DEYSL+VRDTKLGAEELT+DIPNVSEEATKDLDE GMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVI+KKLFSRSIKDKRKRSEDKEAI  LELEYEVKF++LKDVLVEKLF +INGKTSQGV NDLGEEVLPKGKKYTMKMLNAVDDFAHLV GSWTTDK TNA +ADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVY+AKKRKLKVGDKMAGRHGNKGIV+RIVRQEDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:   64 ALGRNLKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHIDEYSLEVRDTKLGAEELTNDIPNVSEEATKDLDEYGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSIKDKRKRSEDKEAINALELEYEVKFQELKDVLVEKLFKMINGKTSQGVANDLGEEVLPKGKKYTMKMLNAVDDFAHLVSGSWTTDKATNAMVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMN 395
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BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: A4AT69_MARSH (DNA-directed RNA polymerase subunit beta n=104 Tax=root TaxID=1 RepID=A4AT69_MARSH)

HSP 1 Score: 616 bits (1589), Expect = 3.080e-209
Identity = 317/332 (95.48%), Postives = 328/332 (98.80%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEY+L+VRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVI+KKLFSRSIKDKRKRSEDKEAI+TLELEYEVKF+QLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLN+VDDFAHLV G+WTTDKD N S+ADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:  759 ALGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYALEVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSIKDKRKRSEDKEAISTLELEYEVKFQQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNSVDDFAHLVAGTWTTDKDVNHSVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVPSRMN 1090
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BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: F6I9U5_ZOBGA (DNA-directed RNA polymerase subunit beta n=67 Tax=root TaxID=1 RepID=F6I9U5_ZOBGA)

HSP 1 Score: 612 bits (1577), Expect = 1.910e-207
Identity = 311/332 (93.67%), Postives = 326/332 (98.19%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSL+VRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVI+KKLFSRS+KDKRKRSEDKE +  LELEYEVKF++LKD+L+EKLFTLINGKTSQGVLNDLGEEVLPKGKKYT+KMLNAVDDFAHLVGGSWT DKDTN ++ADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVY+AKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:  759 ALGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLEVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSVKDKRKRSEDKEELNKLELEYEVKFQELKDILIEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTLKMLNAVDDFAHLVGGSWTMDKDTNEAVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYIAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVPSRMN 1090
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BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: A0A7H9ALA1_9FLAO (DNA-directed RNA polymerase subunit beta n=1 Tax=Costertonia aggregata TaxID=343403 RepID=A0A7H9ALA1_9FLAO)

HSP 1 Score: 609 bits (1571), Expect = 1.510e-206
Identity = 313/332 (94.28%), Postives = 326/332 (98.19%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRNL VAFMPWKGYNFEDAIVISEKVVREDIFTSIH+DEYSL+VRDTKLGAEELT+DIPNVSEEATKDLDE+GMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVI+KKLFSRSIKDKRKRSEDK+AI  LELEYEVKF++LKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTN  +ADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVYVAKKRKLKVGDKMAGRHGNKGIV+RIVRQEDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:  759 ALGRNLQVAFMPWKGYNFEDAIVISEKVVREDIFTSIHIDEYSLEVRDTKLGAEELTNDIPNVSEEATKDLDEHGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSIKDKRKRSEDKDAINKLELEYEVKFQELKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNTMVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMN 1090
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BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: A0A846QVQ1_9FLAO (DNA-directed RNA polymerase subunit beta n=1 Tax=Saonia flava TaxID=523696 RepID=A0A846QVQ1_9FLAO)

HSP 1 Score: 608 bits (1569), Expect = 3.000e-206
Identity = 310/332 (93.37%), Postives = 328/332 (98.80%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRN+ VAFMPWKGYNFEDAIVISEKVVREDIFTSIH+DEYSL+VRDTKLGAEELT+DIPNVSEEATKDLDE+GMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVI+KKLFSRSIKDKRKRSEDKEAI+ LE++YEVKF+QLKD+LVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLN+VDDFAHLVGGSWTTDKDTNA +ADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVY+AKKRKLKVGDKMAGRHGNKGIV+RIVRQEDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:  759 ALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHIDEYSLEVRDTKLGAEELTNDIPNVSEEATKDLDEHGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSIKDKRKRSEDKEAISKLEMDYEVKFQQLKDILVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNSVDDFAHLVGGSWTTDKDTNALVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMN 1090
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: A0A1B7ZBB0_9FLAO (DNA-directed RNA polymerase subunit beta n=11 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A1B7ZBB0_9FLAO)

HSP 1 Score: 608 bits (1567), Expect = 5.980e-206
Identity = 310/332 (93.37%), Postives = 325/332 (97.89%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSL+VRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVI+KKLFSRS+KDKRKRSEDKE ++ LELEYEVKF++LKDVLVEKLFT++NGKTSQGVLNDLGEEVLPKGKKYTMKMLN+VDDFAHLVGGSWTTD +TN  +ADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVR EDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:  759 ALGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLEVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSVKDKRKRSEDKEELSKLELEYEVKFQELKDVLVEKLFTIVNGKTSQGVLNDLGEEVLPKGKKYTMKMLNSVDDFAHLVGGSWTTDTETNTLVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRHEDMPFLEDGTPVDIVLNPLGVPSRMN 1090
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BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: A0A0S1S7F0_9FLAO (DNA-directed RNA polymerase subunit beta n=1 Tax=Sediminicola sp. YIK13 TaxID=1453352 RepID=A0A0S1S7F0_9FLAO)

HSP 1 Score: 607 bits (1566), Expect = 8.430e-206
Identity = 312/332 (93.98%), Postives = 325/332 (97.89%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRNL VAFMPWKGYNFEDAIVISEKVVREDIFTSIH+DEYSL+VRDTKLGAEELT+DIPNVSEEATKDLDE+GMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVI+KKLFSRSIKDKRKRSEDKEAI+ LELEYEVKFEQLKDVLVEKLF LINGKTSQGVLNDLGEEVLPKGKKYTMKMLN+VDDFAHLVGGSWTTDKDTN  +ADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVY+AKKRKLKVGDKMAGRHGNKGIV+RIVR EDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:  759 ALGRNLKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHIDEYSLEVRDTKLGAEELTNDIPNVSEEATKDLDEHGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSIKDKRKRSEDKEAISKLELEYEVKFEQLKDVLVEKLFVLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNSVDDFAHLVGGSWTTDKDTNTLVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIVLNPLGVPSRMN 1090
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: A0A0R2T3V8_9FLAO (DNA-directed RNA polymerase subunit beta n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A0R2T3V8_9FLAO)

HSP 1 Score: 606 bits (1563), Expect = 2.370e-205
Identity = 312/332 (93.98%), Postives = 326/332 (98.19%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRNL VAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSL+VRDTKLGAEELT+DIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRS+KDKRKRSEDK+AIT LELEYEVKF+QLKDVLVEKLF+L+NGKTSQGVLNDL EEVLPKGKKY++KMLN+VDDFAHLVGGSWTTDK TNAS+ADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVR EDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:  759 ALGRNLKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLEVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSVKDKRKRSEDKDAITKLELEYEVKFQQLKDVLVEKLFSLVNGKTSQGVLNDLEEEVLPKGKKYSLKMLNSVDDFAHLVGGSWTTDKATNASVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRHEDMPFLEDGTPVDIVLNPLGVPSRMN 1090
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: A0A3S0BVI6_9FLAO (DNA-directed RNA polymerase subunit beta n=5 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A3S0BVI6_9FLAO)

HSP 1 Score: 604 bits (1558), Expect = 1.320e-204
Identity = 310/332 (93.37%), Postives = 323/332 (97.29%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRNL VAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEY+L+VRDTKLGAEELT+DIPNVSEEATKDLDE GMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVI+KKLFSRS+KDKRKRSEDKE +  LELEYEVKF+QLKDVLVEKLFTL+NGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKD NA +ADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVY+AKKRKLKVGDKMAGRHGNKGIVSRIVR EDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:  759 ALGRNLVVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYALEVRDTKLGAEELTNDIPNVSEEATKDLDEYGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSVKDKRKRSEDKEELAKLELEYEVKFQQLKDVLVEKLFTLVNGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDCNALVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYIAKKRKLKVGDKMAGRHGNKGIVSRIVRHEDMPFLEDGTPVDIVLNPLGVPSRMN 1090
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Match: E6X7I6_CELAD (DNA-directed RNA polymerase subunit beta n=8 Tax=Flavobacteriaceae TaxID=49546 RepID=E6X7I6_CELAD)

HSP 1 Score: 604 bits (1557), Expect = 1.860e-204
Identity = 310/332 (93.37%), Postives = 322/332 (96.99%), Query Frame = 1 
Query:    1 SLGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTLELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVQSRIN 996
            +LGRNL VAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSL+VRDTKLGAEELT+DIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVI+KKLFSRS+KDKRKRSEDKEAI+ LELEYEVKF+QLKDVL+EKLF L+NGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGG WTTDKD N  + DLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGI+KLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVR EDMPFLEDGTPVDIVLNPLGV SR+N
Sbjct:  759 ALGRNLKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLEVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSVKDKRKRSEDKEAISNLELEYEVKFQQLKDVLIEKLFNLVNGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFAHLVGGLWTTDKDNNNLVTDLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRHEDMPFLEDGTPVDIVLNPLGVPSRMN 1090
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15202.3020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y3CA76_9FLAO3.630e-21293.07DNA-directed RNA polymerase n=4 Tax=Flavobacteriac... [more]
A4AT69_MARSH3.080e-20995.48DNA-directed RNA polymerase subunit beta n=104 Tax... [more]
F6I9U5_ZOBGA1.910e-20793.67DNA-directed RNA polymerase subunit beta n=67 Tax=... [more]
A0A7H9ALA1_9FLAO1.510e-20694.28DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A846QVQ1_9FLAO3.000e-20693.37DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A1B7ZBB0_9FLAO5.980e-20693.37DNA-directed RNA polymerase subunit beta n=11 Tax=... [more]
A0A0S1S7F0_9FLAO8.430e-20693.98DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A0R2T3V8_9FLAO2.370e-20593.98DNA-directed RNA polymerase subunit beta n=3 Tax=F... [more]
A0A3S0BVI6_9FLAO1.320e-20493.37DNA-directed RNA polymerase subunit beta n=5 Tax=F... [more]
E6X7I6_CELAD1.860e-20493.37DNA-directed RNA polymerase subunit beta n=8 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15202contigE-siliculosus-1a_F_contig15202:3..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size966
Model size996
Exons1
Hectar predicted targeting categoryother localisation
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelMaribacter
COG Functional cat.K
EC2.7.7.6
EggNOG OGs1HXXA@117743,2PGY4@252356,4NF8D@976,COG0085@1,COG0085@2
EggNOG free text desc.RNA polymerase beta subunit external 1 domain
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
KEGG ModuleM00183
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ReactionR00435,R00441,R00442,R00443
KEGG koko:K03043,ko:K13797
KEGG rclassRC02795
Preferred namerpoB
Seed eggNOG ortholog313603.FB2170_16181
Seed ortholog evalue2.4e-170
Seed ortholog score604.7
Taxonomic scopeBacteria
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.5996058-UTR-E-siliculosus-1a_F_contig15202:2..321622928031.5996058-UTR-E-siliculosus-1a_F_contig15202:2..32Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15202 3..32 +
1696318780.2609227-UTR-E-siliculosus-1a_F_contig15202:2..321696318780.2609227-UTR-E-siliculosus-1a_F_contig15202:2..32Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15202 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.6146915-CDS-E-siliculosus-1a_F_contig15202:32..9981622928031.6146915-CDS-E-siliculosus-1a_F_contig15202:32..998Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15202 33..998 +
1696318780.2719617-CDS-E-siliculosus-1a_F_contig15202:32..9981696318780.2719617-CDS-E-siliculosus-1a_F_contig15202:32..998Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15202 33..998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15202.3020.1prot_E-siliculosus-1a_F_contig15202.3020.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15202 33..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15202.3020.1

>prot_E-siliculosus-1a_F_contig15202.3020.1 ID=prot_E-siliculosus-1a_F_contig15202.3020.1|Name=mRNA_E-siliculosus-1a_F_contig15202.3020.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=322bp
MPWKGYNFEDAIVISEKVVREDIFTSIHVDEYSLDVRDTKLGAEELTHDI
PNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRA
IFGDKAGDVKDASLKASPSLRGVVIEKKLFSRSIKDKRKRSEDKEAITTL
ELEYEVKFEQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKM
LNAVDDFAHLVGGSWTTDKDTNASLADLLHNYKIKLNDLQGNLRRDKFTI
SVGDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMP
FLEDGTPVDIVLNPLGVQSRIN
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mRNA from alignment at E-siliculosus-1a_F_contig15202:3..998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15202.3020.1 ID=mRNA_E-siliculosus-1a_F_contig15202.3020.1|Name=mRNA_E-siliculosus-1a_F_contig15202.3020.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=996bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15202:3..998+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCTTTGGGTAGAAATCTAACGGTTGCCTTTATGCCTTGGAAAGGATATAA
TTTTGAGGATGCGATCGTAATATCTGAAAAAGTAGTTCGTGAAGATATCT
TTACTTCGATACATGTTGATGAATATTCTTTGGATGTTCGTGATACGAAG
TTAGGCGCTGAAGAATTGACCCATGATATACCAAATGTTTCTGAAGAGGC
AACAAAAGACCTTGACGAAAATGGAATGATTCGTATTGGTGCAGAGGTAA
AACCTGGAGATATACTAATAGGTAAGATCACACCGAAAGGAGAATCTGAT
CCTACTCCGGAAGAAAAATTACTTCGTGCTATTTTTGGTGATAAAGCTGG
TGATGTGAAAGATGCTTCTTTGAAAGCTTCTCCATCACTAAGAGGTGTTG
TCATTGAGAAAAAATTATTTTCTCGTTCTATCAAAGATAAGCGTAAGCGC
TCTGAAGATAAAGAGGCAATTACGACACTTGAGTTAGAATATGAAGTGAA
ATTTGAGCAATTGAAAGACGTATTAGTCGAGAAGTTGTTTACATTAATTA
ATGGAAAAACATCACAAGGTGTCTTGAATGATTTGGGAGAAGAAGTACTC
CCGAAAGGAAAGAAATATACCATGAAGATGTTAAATGCTGTTGATGATTT
CGCTCACTTGGTGGGAGGAAGTTGGACAACGGATAAAGATACCAATGCTT
CACTTGCTGATTTATTACACAACTATAAGATTAAGTTGAATGATCTTCAA
GGAAACTTGAGAAGAGATAAATTTACCATCTCTGTGGGTGATGAATTACC
TGCGGGAATCATTAAACTAGCTAAAGTATACGTTGCTAAAAAACGTAAGC
TGAAAGTTGGTGATAAGATGGCGGGTCGTCACGGTAACAAGGGTATCGTT
TCTCGTATCGTTCGTCAAGAAGATATGCCGTTTTTAGAAGATGGAACTCC
AGTTGATATCGTATTAAATCCACTGGGTGTACAATCACGTATAAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15202:3..998+

>mRNA_E-siliculosus-1a_F_contig15202.3020.1 ID=mRNA_E-siliculosus-1a_F_contig15202.3020.1|Name=mRNA_E-siliculosus-1a_F_contig15202.3020.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1932bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15202:3..998+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTTGGAAAGGATATAATTTTGAGGATGCGATCGTAATATCTGAAAA
AGTAGTTCGTGAAGATATCTTTACTTCGATACATGTTGATGAATATTCTT
TGGATGTTCGTGATACGAAGTTAGGCGCTGAAGAATTGACCCATGATATA
CCAAATGTTTCTGAAGAGGCAACAAAAGACCTTGACGAAAATGGAATGAT
TCGTATTGGTGCAGAGGTAAAACCTGGAGATATACTAATAGGTAAGATCA
CACCGAAAGGAGAATCTGATCCTACTCCGGAAGAAAAATTACTTCGTGCT
ATTTTTGGTGATAAAGCTGGTGATGTGAAAGATGCTTCTTTGAAAGCTTC
TCCATCACTAAGAGGTGTTGTCATTGAGAAAAAATTATTTTCTCGTTCTA
TCAAAGATAAGCGTAAGCGCTCTGAAGATAAAGAGGCAATTACGACACTT
GAGTTAGAATATGAAGTGAAATTTGAGCAATTGAAAGACGTATTAGTCGA
GAAGTTGTTTACATTAATTAATGGAAAAACATCACAAGGTGTCTTGAATG
ATTTGGGAGAAGAAGTACTCCCGAAAGGAAAGAAATATACCATGAAGATG
TTAAATGCTGTTGATGATTTCGCTCACTTGGTGGGAGGAAGTTGGACAAC
GGATAAAGATACCAATGCTTCACTTGCTGATTTATTACACAACTATAAGA
TTAAGTTGAATGATCTTCAAGGAAACTTGAGAAGAGATAAATTTACCATC
TCTGTGGGTGATGAATTACCTGCGGGAATCATTAAACTAGCTAAAGTATA
CGTTGCTAAAAAACGTAAGCTGAAAGTTGGTGATAAGATGGCGGGTCGTC
ACGGTAACAAGGGTATCGTTTCTCGTATCGTTCGTCAAGAAGATATGCCG
TTTTTAGAAGATGGAACTCCAGTTGATATCGTATTAAATCCACTGGGTGT
ACAATCACGTATAAACATGCCTTGGAAAGGATATAATTTTGAGGATGCGA
TCGTAATATCTGAAAAAGTAGTTCGTGAAGATATCTTTACTTCGATACAT
GTTGATGAATATTCTTTGGATGTTCGTGATACGAAGTTAGGCGCTGAAGA
ATTGACCCATGATATACCAAATGTTTCTGAAGAGGCAACAAAAGACCTTG
ACGAAAATGGAATGATTCGTATTGGTGCAGAGGTAAAACCTGGAGATATA
CTAATAGGTAAGATCACACCGAAAGGAGAATCTGATCCTACTCCGGAAGA
AAAATTACTTCGTGCTATTTTTGGTGATAAAGCTGGTGATGTGAAAGATG
CTTCTTTGAAAGCTTCTCCATCACTAAGAGGTGTTGTCATTGAGAAAAAA
TTATTTTCTCGTTCTATCAAAGATAAGCGTAAGCGCTCTGAAGATAAAGA
GGCAATTACGACACTTGAGTTAGAATATGAAGTGAAATTTGAGCAATTGA
AAGACGTATTAGTCGAGAAGTTGTTTACATTAATTAATGGAAAAACATCA
CAAGGTGTCTTGAATGATTTGGGAGAAGAAGTACTCCCGAAAGGAAAGAA
ATATACCATGAAGATGTTAAATGCTGTTGATGATTTCGCTCACTTGGTGG
GAGGAAGTTGGACAACGGATAAAGATACCAATGCTTCACTTGCTGATTTA
TTACACAACTATAAGATTAAGTTGAATGATCTTCAAGGAAACTTGAGAAG
AGATAAATTTACCATCTCTGTGGGTGATGAATTACCTGCGGGAATCATTA
AACTAGCTAAAGTATACGTTGCTAAAAAACGTAAGCTGAAAGTTGGTGAT
AAGATGGCGGGTCGTCACGGTAACAAGGGTATCGTTTCTCGTATCGTTCG
TCAAGAAGATATGCCGTTTTTAGAAGATGGAACTCCAGTTGATATCGTAT
TAAATCCACTGGGTGTACAATCACGTATAAAC
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