mRNA_E-siliculosus-1a_F_contig152.3014.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5JIX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX6_9PHAE) HSP 1 Score: 301 bits (771), Expect = 1.530e-98 Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 2
Query: 584 MRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHEE----PPPWS 1081
MRKNLR+IHRQQK+TT A HDDTADSRP QIGGYIRR VGADRNAIPGDEALEAAT QALKNLERFWIVGVVEQYTGLLEVWRRSLDP +KHGRLWNKYAAMQFNSSPVGSREVLALIDPELVR+FNGSLALQW+VYERAVGLW +RCREVLPD LHE+ P PWS
Sbjct: 1 MRKNLRKIHRQQKETTMGARHDDTADSRPHEQIGGYIRRLVGADRNAIPGDEALEAATAQALKNLERFWIVGVVEQYTGLLEVWRRSLDPENKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRYFNGSLALQWDVYERAVGLWEVRCREVLPDRLHEDMCTVPHPWS 170
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5JGJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE) HSP 1 Score: 267 bits (683), Expect = 5.430e-83 Identity = 132/242 (54.55%), Postives = 173/242 (71.49%), Query Frame = 2
Query: 347 EVCLSHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDT--ADSRPQGQIGGYIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHEE 1066
E+CL+H++L+DE VQ E + R KVLAGHF+WGFQRH+ PYL++TALRNPLEV+VS QQY H+++TKTL +A+ FV+ MRK LR+ + G ++ PQ QIGG++ R VG ++ + G E LE A +A++NLE FW+VG+VEQY G +EV LDP KH +W Y+ QFN+SP+ SR+VLA +DP+LVR FNGSLALQW VYE+AV LW +RCREVLP HEE
Sbjct: 83 EICLAHFKLVDEPVQLELLSRQKVLAGHFLWGFQRHLRRPYLMVTALRNPLEVYVSAQQYTHKRKTKTLEKAQAFVSKAMRKTLRQYG-----DGPALGEEEMPFGGKSPQ-QIGGFVFRLVGINKKQLYG-EKLEVAVTKAIENLETFWLVGLVEQYAGFVEVLELLLDPERKHVDVWQTYSTRQFNTSPLRSRDVLAALDPQLVREFNGSLALQWRVYEKAVALWDLRCREVLPVAKHEE 317
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D8LHE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE7_ECTSI) HSP 1 Score: 248 bits (633), Expect = 8.620e-78 Identity = 122/136 (89.71%), Postives = 124/136 (91.18%), Query Frame = 2
Query: 689 YIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHEE----PPPWSL 1084
YIRRFVGA RNAI GDEALEAATVQA K LERFWIVGVVEQYTGLLEVWRRSLDP DKHGR WNKYAAMQFNSS VGSREVLALIDPELVRHFNGSLALQWEVYER+VGLWG+RCREVL DTLHEE PPPWSL
Sbjct: 32 YIRRFVGAHRNAIHGDEALEAATVQASKYLERFWIVGVVEQYTGLLEVWRRSLDPEDKHGRPWNKYAAMQFNSSLVGSREVLALIDPELVRHFNGSLALQWEVYERSVGLWGVRCREVLRDTLHEEMCTVPPPWSL 167
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5JGQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE) HSP 1 Score: 230 bits (586), Expect = 5.750e-67 Identity = 127/247 (51.42%), Postives = 158/247 (63.97%), Query Frame = 2
Query: 350 VCLSHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQA-----RDFVAGVMRKNLR---EIHRQQKKTTKSAGHDDTADSRPQ-GQIGGYIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHE 1063
+CL+ +ELI E VQ + +L+ K+LAGHF+WGFQR V P+L++T+LRNPLE FVSG+Q++H T+TL QA + FV+ M L H S GH R Q+GG+I R VG + AL A +A+KNLE FW+VGVVEQY GL V +R LDP KH LW+KY+ N SPV SR VLA IDP LVR FN SLALQW+VYE+AV LWG RCREVLP T+H+
Sbjct: 197 ICLAKHELIKESVQMKMLLKQKILAGHFIWGFQRLVEKPFLMVTSLRNPLEAFVSGRQFLHPDMTETLEQASAAHAQAFVSYAMLNALGIDGPGHVAMLGERASLGHALLRGRRQSPDQLGGFIFRLVGQENAKKLHGLALSRAADEAMKNLEAFWVVGVVEQYAGLQAVLKRLLDPDLKHPALWDKYSYRHSNRSPVDSRYVLAAIDPSLVRQFNDSLALQWKVYEKAVELWGTRCREVLPITVHD 443
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D8LIP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI) HSP 1 Score: 191 bits (486), Expect = 1.830e-53 Identity = 107/276 (38.77%), Postives = 156/276 (56.52%), Query Frame = 2
Query: 242 AGPFYVLALHRLLFLPVIPGLSNRHCPSLSFWQRDEVCLSHYELI-DEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGADR------NAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLP 1048
+G +Y AL+ P++ + ++ W+ +CL+ + D Q+ ++ +VLAGHF+W +++V P+LLIT LR+PLE+FVS +Q+ HR+ET +L A DFVA MR L G +D +D G++RRF+G D + E A A ++L FW+VGVVEQY G + V + +LDP +H RLW + + N SPV SR+VL IDP+LVR FN +L+ QW+VY+ A+ LW RCREVLP
Sbjct: 77 SGSWYTAALYEDRKYPMLAPVGG--FAFIAVWESHVICLNDQNALRDSASQRWEVAGTRVLAGHFLWDLRQYVTPPHLLITMLRDPLELFVSAKQFKHREETASLEAAADFVASNMRGRL--------------GWEDPSDI-------GFVRRFLGTDAANSYDPQLVYTKEQSSAMASTAAEHLSNFWVVGVVEQYAGFVNVLQHTLDPELEHPRLWEAASEVNNNGSPVHSRDVLDRIDPDLVREFNATLSFQWQVYDVALQLWDSRCREVLP 329
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D8LHE4_ECTSI (Similar to heparin sulfate O-sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE4_ECTSI) HSP 1 Score: 188 bits (477), Expect = 4.770e-53 Identity = 107/263 (40.68%), Postives = 150/263 (57.03%), Query Frame = 2
Query: 299 GLSNRHCPSLSFWQRDEVCL-SHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGA------DRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGS-LALQWEVYERAVGLWGIRCREVLPDTLHE 1063
G +C S +F +CL S +L++ +K + K+LAGHF+W F+ +V PYL++T LRNPLE+FVS QQ++H+ ETKTL + FV MR L K A D A +IRRF+ + D + DE + A A+ +L F++VGVVEQY G +EV +R+LDP + H +LW ++ N SPV S +VL+ IDP+LVR FN + L QW+VY+ A+ LW RCRE+LP HE
Sbjct: 22 GAIVEYCRSKTFTNAGRICLNSQNDLMNPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMRSRL-----------KWADPTDLA----------FIRRFLDSKTANSYDPQVMYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVKDNGSPVHSGDVLSGIDPDLVREFNATTLGRQWQVYDVALKLWDRRCREILPAEEHE 263
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5KCZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE) HSP 1 Score: 189 bits (480), Expect = 3.420e-52 Identity = 112/285 (39.30%), Postives = 155/285 (54.39%), Query Frame = 2
Query: 233 FSSAGPFYVLALHRLLFLPVIPGLSNRHCPSLSFWQRDEVCL-SHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGA------DRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGS-LALQWEVYERAVGLWGIRCREVLPDTLHE 1063
F AG L L + G +C S +F +CL S +L+D +K + K+LAGHF+W F+ +V PYL++T LRNPLE+FVS QQ++H+ ETKTL + FV M+ L G D D +IRRF+ + D + DE + A A+ +L F++VGVVEQY G +EV +R+LDP + H +LW + N SPV S +VL+ IDP+LVR FN + LA QW+VY+ A+ LW RCRE+LP HE
Sbjct: 110 FKCAGTTLREVLTTWAKLEGLNGAIVEYCRSKTFTNVGRICLNSQNDLMDPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMKSRL--------------GWADPTDL-------AFIRRFLDSETANSYDPQVLYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVLDNGSPVHSGDVLSGIDPDLVREFNATALARQWQVYDVALKLWDSRCREILPPEDHE 373
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.050e-48 Identity = 114/278 (41.01%), Postives = 150/278 (53.96%), Query Frame = 2
Query: 293 IPGLSNRHCPSLSFWQRDEVCLSHYELIDEEVQKEQILRLKVLAGHFMWG-------------------FQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWN-KYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHEE 1066
+P + C LS +R +VCL +Y+LI E Q E I R KVLAGHF WG FQ + P+ L+T LRNPLE+FVSG+QY++R T TL +A V MRK+L +T P GY+ R VG R+ + E EA TV+ +NL+ FW+VGVVEQY G + V R LDP H LW + + N+SPV S VLA +DP+LV+ FN +L+ QW +Y AV L+ RC+EVLP+ H E
Sbjct: 89 LPCATVAGCGHLSLKER-KVCLLNYKLIFPEQQGEFIARQKVLAGHFRWGESRVTSACHTVTRTLFASGFQVYAAEPHWLVTTLRNPLELFVSGEQYLNRATTATLSKAVQVVERAMRKSL-----------------ETPTQPP-----GYLHRLVG--RSVVTNAEIREA-TVEGARNLKTFWLVGVVEQYGGFVAVLRALLDPDGLHDDLWRPQLEEHKLNASPVQSSNVLASLDPQLVKQFNSTLSYQWLMYGHAVRLFRARCQEVLPEYQHWE 340
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D7G7G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI) HSP 1 Score: 179 bits (454), Expect = 3.470e-47 Identity = 93/238 (39.08%), Postives = 139/238 (58.40%), Query Frame = 2
Query: 347 EVCLSHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFV-----GADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVL 1045
++CL H+ LI+E Q I +V+AGHF WGFQ HV PY++ T LRNPLE+FVSGQQY++RK ++ A V + + +++ H+ + G +T G+I R V + + + G + L A +A NL+ FW+VGV+EQY G + V + +DP +W +YA ++N+SP G+ +VLA IDP LV+ FN +L+ QWEVY AV L+ RC ++L
Sbjct: 99 KICLKHHSLINERFQAPFIRLHQVVAGHFTWGFQNHVRQPYVMFTTLRNPLELFVSGQQYLNRKASRHFAHAVSLVEDTILRAIKQ-HQLRGDVMVPEGMGNTKSV-------GFIYRLVDPVQANSTQEGLVGGKTLSAGAQEAKDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNETLSHQWEVYSYAVDLYKHRCHQML 328
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D7FJ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ87_ECTSI) HSP 1 Score: 166 bits (419), Expect = 1.610e-44 Identity = 110/273 (40.29%), Postives = 146/273 (53.48%), Query Frame = 2
Query: 290 VIPGLSNR------HCPSLSFWQRDEVCLSH--YELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRF------VGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGS-LALQWEVYERAVGLWGIRCREVLPDTLHE 1063
VI G S R H P S +C+ H + D+ + K + KVLAGHF W F+ PYL++T LRNPLE+FVS Q+ HR ET+TL A FV MR L G + GQ+G +IR F VG + + A +++++L F +VGVVEQY G +EV + +LDPG ++ +W A +Q N SPV SR+VL IDP LVR +N + L LQW+VYE A+ LW RCREVLP + HE
Sbjct: 13 VIAGCSKRQKEFQFHDPPGSI-----ICVRHEDHRPKDDNIGKWLVSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTIL--------------GLEGL------GQLG-FIRVFLNDTGAVGYNPRGVYTHNETWAMAAESVEHLNTFLVVGVVEQYEGFVEVLKHTLDPGLENPSVWTTGAKVQNNKSPVSSRDVLRNIDPYLVRLYNETRLDLQWKVYEVALQLWDSRCREVLPRSDHE 259 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig152.3014.1 >prot_E-siliculosus-1a_F_contig152.3014.1 ID=prot_E-siliculosus-1a_F_contig152.3014.1|Name=mRNA_E-siliculosus-1a_F_contig152.3014.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=218bp MWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVback to top mRNA from alignment at E-siliculosus-1a_F_contig152:50351..54946+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig152.3014.1 ID=mRNA_E-siliculosus-1a_F_contig152.3014.1|Name=mRNA_E-siliculosus-1a_F_contig152.3014.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4596bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig152:50351..54946+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig152:50351..54946+ >mRNA_E-siliculosus-1a_F_contig152.3014.1 ID=mRNA_E-siliculosus-1a_F_contig152.3014.1|Name=mRNA_E-siliculosus-1a_F_contig152.3014.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1308bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig152:50351..54946+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |