mRNA_E-siliculosus-1a_F_contig152.3014.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig152.3014.1
Unique NamemRNA_E-siliculosus-1a_F_contig152.3014.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5JIX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX6_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 1.530e-98
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 2
Query:  584 MRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHEE----PPPWS 1081
            MRKNLR+IHRQQK+TT  A HDDTADSRP  QIGGYIRR VGADRNAIPGDEALEAAT QALKNLERFWIVGVVEQYTGLLEVWRRSLDP +KHGRLWNKYAAMQFNSSPVGSREVLALIDPELVR+FNGSLALQW+VYERAVGLW +RCREVLPD LHE+    P PWS
Sbjct:    1 MRKNLRKIHRQQKETTMGARHDDTADSRPHEQIGGYIRRLVGADRNAIPGDEALEAATAQALKNLERFWIVGVVEQYTGLLEVWRRSLDPENKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRYFNGSLALQWDVYERAVGLWEVRCREVLPDRLHEDMCTVPHPWS 170          
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5JGJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 5.430e-83
Identity = 132/242 (54.55%), Postives = 173/242 (71.49%), Query Frame = 2
Query:  347 EVCLSHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDT--ADSRPQGQIGGYIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHEE 1066
            E+CL+H++L+DE VQ E + R KVLAGHF+WGFQRH+  PYL++TALRNPLEV+VS QQY H+++TKTL +A+ FV+  MRK LR+          + G ++       PQ QIGG++ R VG ++  + G E LE A  +A++NLE FW+VG+VEQY G +EV    LDP  KH  +W  Y+  QFN+SP+ SR+VLA +DP+LVR FNGSLALQW VYE+AV LW +RCREVLP   HEE
Sbjct:   83 EICLAHFKLVDEPVQLELLSRQKVLAGHFLWGFQRHLRRPYLMVTALRNPLEVYVSAQQYTHKRKTKTLEKAQAFVSKAMRKTLRQYG-----DGPALGEEEMPFGGKSPQ-QIGGFVFRLVGINKKQLYG-EKLEVAVTKAIENLETFWLVGLVEQYAGFVEVLELLLDPERKHVDVWQTYSTRQFNTSPLRSRDVLAALDPQLVREFNGSLALQWRVYEKAVALWDLRCREVLPVAKHEE 317          
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D8LHE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE7_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 8.620e-78
Identity = 122/136 (89.71%), Postives = 124/136 (91.18%), Query Frame = 2
Query:  689 YIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHEE----PPPWSL 1084
            YIRRFVGA RNAI GDEALEAATVQA K LERFWIVGVVEQYTGLLEVWRRSLDP DKHGR WNKYAAMQFNSS VGSREVLALIDPELVRHFNGSLALQWEVYER+VGLWG+RCREVL DTLHEE    PPPWSL
Sbjct:   32 YIRRFVGAHRNAIHGDEALEAATVQASKYLERFWIVGVVEQYTGLLEVWRRSLDPEDKHGRPWNKYAAMQFNSSLVGSREVLALIDPELVRHFNGSLALQWEVYERSVGLWGVRCREVLRDTLHEEMCTVPPPWSL 167          
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5JGQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 5.750e-67
Identity = 127/247 (51.42%), Postives = 158/247 (63.97%), Query Frame = 2
Query:  350 VCLSHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQA-----RDFVAGVMRKNLR---EIHRQQKKTTKSAGHDDTADSRPQ-GQIGGYIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHE 1063
            +CL+ +ELI E VQ + +L+ K+LAGHF+WGFQR V  P+L++T+LRNPLE FVSG+Q++H   T+TL QA     + FV+  M   L      H        S GH      R    Q+GG+I R VG +        AL  A  +A+KNLE FW+VGVVEQY GL  V +R LDP  KH  LW+KY+    N SPV SR VLA IDP LVR FN SLALQW+VYE+AV LWG RCREVLP T+H+
Sbjct:  197 ICLAKHELIKESVQMKMLLKQKILAGHFIWGFQRLVEKPFLMVTSLRNPLEAFVSGRQFLHPDMTETLEQASAAHAQAFVSYAMLNALGIDGPGHVAMLGERASLGHALLRGRRQSPDQLGGFIFRLVGQENAKKLHGLALSRAADEAMKNLEAFWVVGVVEQYAGLQAVLKRLLDPDLKHPALWDKYSYRHSNRSPVDSRYVLAAIDPSLVRQFNDSLALQWKVYEKAVELWGTRCREVLPITVHD 443          
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D8LIP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.830e-53
Identity = 107/276 (38.77%), Postives = 156/276 (56.52%), Query Frame = 2
Query:  242 AGPFYVLALHRLLFLPVIPGLSNRHCPSLSFWQRDEVCLSHYELI-DEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGADR------NAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLP 1048
            +G +Y  AL+     P++  +       ++ W+   +CL+    + D   Q+ ++   +VLAGHF+W  +++V  P+LLIT LR+PLE+FVS +Q+ HR+ET +L  A DFVA  MR  L              G +D +D        G++RRF+G D         +   E   A    A ++L  FW+VGVVEQY G + V + +LDP  +H RLW   + +  N SPV SR+VL  IDP+LVR FN +L+ QW+VY+ A+ LW  RCREVLP
Sbjct:   77 SGSWYTAALYEDRKYPMLAPVGG--FAFIAVWESHVICLNDQNALRDSASQRWEVAGTRVLAGHFLWDLRQYVTPPHLLITMLRDPLELFVSAKQFKHREETASLEAAADFVASNMRGRL--------------GWEDPSDI-------GFVRRFLGTDAANSYDPQLVYTKEQSSAMASTAAEHLSNFWVVGVVEQYAGFVNVLQHTLDPELEHPRLWEAASEVNNNGSPVHSRDVLDRIDPDLVREFNATLSFQWQVYDVALQLWDSRCREVLP 329          
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D8LHE4_ECTSI (Similar to heparin sulfate O-sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE4_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 4.770e-53
Identity = 107/263 (40.68%), Postives = 150/263 (57.03%), Query Frame = 2
Query:  299 GLSNRHCPSLSFWQRDEVCL-SHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGA------DRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGS-LALQWEVYERAVGLWGIRCREVLPDTLHE 1063
            G    +C S +F     +CL S  +L++   +K  +   K+LAGHF+W F+ +V  PYL++T LRNPLE+FVS QQ++H+ ETKTL  +  FV   MR  L           K A   D A          +IRRF+ +      D   +  DE + A    A+ +L  F++VGVVEQY G +EV +R+LDP + H +LW     ++ N SPV S +VL+ IDP+LVR FN + L  QW+VY+ A+ LW  RCRE+LP   HE
Sbjct:   22 GAIVEYCRSKTFTNAGRICLNSQNDLMNPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMRSRL-----------KWADPTDLA----------FIRRFLDSKTANSYDPQVMYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVKDNGSPVHSGDVLSGIDPDLVREFNATTLGRQWQVYDVALKLWDRRCREILPAEEHE 263          
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5KCZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.420e-52
Identity = 112/285 (39.30%), Postives = 155/285 (54.39%), Query Frame = 2
Query:  233 FSSAGPFYVLALHRLLFLPVIPGLSNRHCPSLSFWQRDEVCL-SHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGA------DRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGS-LALQWEVYERAVGLWGIRCREVLPDTLHE 1063
            F  AG      L     L  + G    +C S +F     +CL S  +L+D   +K  +   K+LAGHF+W F+ +V  PYL++T LRNPLE+FVS QQ++H+ ETKTL  +  FV   M+  L              G  D  D         +IRRF+ +      D   +  DE + A    A+ +L  F++VGVVEQY G +EV +R+LDP + H +LW     +  N SPV S +VL+ IDP+LVR FN + LA QW+VY+ A+ LW  RCRE+LP   HE
Sbjct:  110 FKCAGTTLREVLTTWAKLEGLNGAIVEYCRSKTFTNVGRICLNSQNDLMDPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMKSRL--------------GWADPTDL-------AFIRRFLDSETANSYDPQVLYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVLDNGSPVHSGDVLSGIDPDLVREFNATALARQWQVYDVALKLWDSRCREILPPEDHE 373          
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.050e-48
Identity = 114/278 (41.01%), Postives = 150/278 (53.96%), Query Frame = 2
Query:  293 IPGLSNRHCPSLSFWQRDEVCLSHYELIDEEVQKEQILRLKVLAGHFMWG-------------------FQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWN-KYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVLPDTLHEE 1066
            +P  +   C  LS  +R +VCL +Y+LI  E Q E I R KVLAGHF WG                   FQ +   P+ L+T LRNPLE+FVSG+QY++R  T TL +A   V   MRK+L                 +T    P     GY+ R VG  R+ +   E  EA TV+  +NL+ FW+VGVVEQY G + V R  LDP   H  LW  +    + N+SPV S  VLA +DP+LV+ FN +L+ QW +Y  AV L+  RC+EVLP+  H E
Sbjct:   89 LPCATVAGCGHLSLKER-KVCLLNYKLIFPEQQGEFIARQKVLAGHFRWGESRVTSACHTVTRTLFASGFQVYAAEPHWLVTTLRNPLELFVSGEQYLNRATTATLSKAVQVVERAMRKSL-----------------ETPTQPP-----GYLHRLVG--RSVVTNAEIREA-TVEGARNLKTFWLVGVVEQYGGFVAVLRALLDPDGLHDDLWRPQLEEHKLNASPVQSSNVLASLDPQLVKQFNSTLSYQWLMYGHAVRLFRARCQEVLPEYQHWE 340          
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D7G7G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 3.470e-47
Identity = 93/238 (39.08%), Postives = 139/238 (58.40%), Query Frame = 2
Query:  347 EVCLSHYELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFV-----GADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRCREVL 1045
            ++CL H+ LI+E  Q   I   +V+AGHF WGFQ HV  PY++ T LRNPLE+FVSGQQY++RK ++    A   V   + + +++ H+ +       G  +T          G+I R V      + +  + G + L A   +A  NL+ FW+VGV+EQY G + V +  +DP      +W +YA  ++N+SP G+ +VLA IDP LV+ FN +L+ QWEVY  AV L+  RC ++L
Sbjct:   99 KICLKHHSLINERFQAPFIRLHQVVAGHFTWGFQNHVRQPYVMFTTLRNPLELFVSGQQYLNRKASRHFAHAVSLVEDTILRAIKQ-HQLRGDVMVPEGMGNTKSV-------GFIYRLVDPVQANSTQEGLVGGKTLSAGAQEAKDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNETLSHQWEVYSYAVDLYKHRCHQML 328          
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Match: D7FJ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ87_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.610e-44
Identity = 110/273 (40.29%), Postives = 146/273 (53.48%), Query Frame = 2
Query:  290 VIPGLSNR------HCPSLSFWQRDEVCLSH--YELIDEEVQKEQILRLKVLAGHFMWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGVMRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRF------VGADRNAIPGDEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRHFNGS-LALQWEVYERAVGLWGIRCREVLPDTLHE 1063
            VI G S R      H P  S      +C+ H  +   D+ + K  +   KVLAGHF W F+     PYL++T LRNPLE+FVS  Q+ HR ET+TL  A  FV   MR  L              G +        GQ+G +IR F      VG +   +       A   +++++L  F +VGVVEQY G +EV + +LDPG ++  +W   A +Q N SPV SR+VL  IDP LVR +N + L LQW+VYE A+ LW  RCREVLP + HE
Sbjct:   13 VIAGCSKRQKEFQFHDPPGSI-----ICVRHEDHRPKDDNIGKWLVSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTIL--------------GLEGL------GQLG-FIRVFLNDTGAVGYNPRGVYTHNETWAMAAESVEHLNTFLVVGVVEQYEGFVEVLKHTLDPGLENPSVWTTGAKVQNNKSPVSSRDVLRNIDPYLVRLYNETRLDLQWKVYEVALQLWDSRCREVLPRSDHE 259          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig152.3014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JIX6_9PHAE1.530e-9887.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGJ5_9PHAE5.430e-8354.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHE7_ECTSI8.620e-7889.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGQ3_9PHAE5.750e-6751.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIP4_ECTSI1.830e-5338.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHE4_ECTSI4.770e-5340.68Similar to heparin sulfate O-sulfotransferase n=1 ... [more]
A0A6H5KCZ6_9PHAE3.420e-5239.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAP0_9PHAE1.050e-4841.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7G7_ECTSI3.470e-4739.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ87_ECTSI1.610e-4440.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig152contigE-siliculosus-1a_F_contig152:50351..54946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size654
Model size1339
Exons6
Ec32 orthologEc-13_000390.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG2363@1,KOG3472@2759
EggNOG free text desc.Protein of unknown function (DUF423)
Preferred nameTMEM256
Seed eggNOG ortholog2880.D8LIP4
Seed ortholog evalue1.1e-38
Seed ortholog score166.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig152.3014.1prot_E-siliculosus-1a_F_contig152.3014.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig152 50784..54694 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928030.3285332-UTR-E-siliculosus-1a_F_contig152:50350..507831622928030.3285332-UTR-E-siliculosus-1a_F_contig152:50350..50783Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig152 50351..50783 +
1696318779.7218807-UTR-E-siliculosus-1a_F_contig152:50350..507831696318779.7218807-UTR-E-siliculosus-1a_F_contig152:50350..50783Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig152 50351..50783 +
1622928030.4243455-UTR-E-siliculosus-1a_F_contig152:54694..549461622928030.4243455-UTR-E-siliculosus-1a_F_contig152:54694..54946Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig152 54695..54946 +
1696318779.7784402-UTR-E-siliculosus-1a_F_contig152:54694..549461696318779.7784402-UTR-E-siliculosus-1a_F_contig152:54694..54946Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig152 54695..54946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928030.3391309-CDS-E-siliculosus-1a_F_contig152:50783..507901622928030.3391309-CDS-E-siliculosus-1a_F_contig152:50783..50790Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 50784..50790 +
1696318779.7311697-CDS-E-siliculosus-1a_F_contig152:50783..507901696318779.7311697-CDS-E-siliculosus-1a_F_contig152:50783..50790Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 50784..50790 +
1622928030.3539574-CDS-E-siliculosus-1a_F_contig152:51246..513651622928030.3539574-CDS-E-siliculosus-1a_F_contig152:51246..51365Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 51247..51365 +
1696318779.7389486-CDS-E-siliculosus-1a_F_contig152:51246..513651696318779.7389486-CDS-E-siliculosus-1a_F_contig152:51246..51365Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 51247..51365 +
1622928030.3645208-CDS-E-siliculosus-1a_F_contig152:52524..526511622928030.3645208-CDS-E-siliculosus-1a_F_contig152:52524..52651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 52525..52651 +
1696318779.746766-CDS-E-siliculosus-1a_F_contig152:52524..526511696318779.746766-CDS-E-siliculosus-1a_F_contig152:52524..52651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 52525..52651 +
1622928030.378576-CDS-E-siliculosus-1a_F_contig152:53327..535471622928030.378576-CDS-E-siliculosus-1a_F_contig152:53327..53547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 53328..53547 +
1696318779.754389-CDS-E-siliculosus-1a_F_contig152:53327..535471696318779.754389-CDS-E-siliculosus-1a_F_contig152:53327..53547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 53328..53547 +
1622928030.3930151-CDS-E-siliculosus-1a_F_contig152:54501..546611622928030.3930151-CDS-E-siliculosus-1a_F_contig152:54501..54661Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 54502..54661 +
1696318779.7618816-CDS-E-siliculosus-1a_F_contig152:54501..546611696318779.7618816-CDS-E-siliculosus-1a_F_contig152:54501..54661Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 54502..54661 +
1622928030.4075117-CDS-E-siliculosus-1a_F_contig152:54673..546941622928030.4075117-CDS-E-siliculosus-1a_F_contig152:54673..54694Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 54674..54694 +
1696318779.7695162-CDS-E-siliculosus-1a_F_contig152:54673..546941696318779.7695162-CDS-E-siliculosus-1a_F_contig152:54673..54694Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig152 54674..54694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig152.3014.1

>prot_E-siliculosus-1a_F_contig152.3014.1 ID=prot_E-siliculosus-1a_F_contig152.3014.1|Name=mRNA_E-siliculosus-1a_F_contig152.3014.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=218bp
MWGFQRHVHTPYLLITALRNPLEVFVSGQQYIHRKETKTLGQARDFVAGV
MRKNLREIHRQQKKTTKSAGHDDTADSRPQGQIGGYIRRFVGADRNAIPG
DEALEAATVQALKNLERFWIVGVVEQYTGLLEVWRRSLDPGDKHGRLWNK
YAAMQFNSSPVGSREVLALIDPELVRHFNGSLALQWEVYERAVGLWGIRC
REVLPDTLHEEPPPWSL*
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mRNA from alignment at E-siliculosus-1a_F_contig152:50351..54946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig152.3014.1 ID=mRNA_E-siliculosus-1a_F_contig152.3014.1|Name=mRNA_E-siliculosus-1a_F_contig152.3014.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4596bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig152:50351..54946+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGAATGGGCCAGGAGATAAGAAACATCAATTAGGGTCGAGGTTCTGTTT CTTGTTTCGTCGACACTGTTGAGCGCGGGTTATTGCGTAGCATTTCAGTA GCGATTTTGTGTATGATGCACCGCTGAAGTGTGTTTCCTAGAACTGTATT TCTTATTGTTCATGAACATTTGAGCCTCTGTTTCTTAACCCATACGTGAC TGGGTTAACGAAATATTGATGCTTCGAAGTATTTTTCATCCGCGGGCCCG TTCTATGTGCTTGCCTTGCATAGACTGTTGTTCCTACCCGTTATCCCCGG CCTTAGCAATCGCCATTGCCCATCTCTCTCGTTTTGGCAGAGAGACGAAG TTTGCCTGAGTCACTACGAGCTGATCGATGAGGAAGTGCAGAAGGAACAG ATCTTGAGGCTCAAGGTTCTGGCTGGCCACTTCATGTGGGGTGAGATGCT GCTGCTTCTGTGATTATGACTTCTGTGATTATGATACTGACGGTCGTTGT TGTTGTTGTTGTTGTTGTTGTTGTAGTTGTTGTAGTTGTTGCATTCGTTT TGTCGTCGTTGTAGCTGCTGTTGGTGGTGGTGACGTTAACGCTGGCAGTA CTCCTATTGCTGTTACTGTTGATCGTAGTGGCGGTGGTGTTGGTTATACT GTTGTTGGTGGTGGTGTTGGCGTTCGTGGCGGTGGTGCTGGTCGCCGTTG TCGTTTTCGTCGACGTCGCAGTTTTTACGTTTCTTGTGCGGGCGAAGAGA GCCTACGCGTCAAGTCCATCACATCTGCGTTACCCCCTGGGGTCTCGGAG ATCCATGTCCTGCCGAGTGCACACACAAGCACGTAAATATGTAGTGCTGA CCATCGATATACTCGTGCACCCCTCCCCCCGCTGAGCCCGGGCAAGGTTT CCAACGGCACGTGCATACGCCATATCTTCTGATCACGGCGTTGAGGAATC CTCTCGAGGTGTTCGTGTCCGGGCAGCAGTACATACACCGGAAGGAGACC AAAACGCTCGGACAGGTAAGAAGCACGGGAGAAAATTGCGCTTTGTGGCT GTTATTTTACCGGAATATTATTAGATTTCTAGGTTATTTATTCGCCATAC AAGAAGATTGAAGATGCTTGCACGGCTCTACTCGCGGATGGTTGGTACTC GTGTGCGTAGAGCAGGCTCGTTGACGAGTAGACAATAATATACCAATGTA TGATGAAAACCTTAGAATTGCTGTTGCGCCTTTTCGGGGAACATATGTGA TCTGCACCTAGGTCCTTGGTCGGCCCTCTGGCGGGCCTTAAGCTTGGCAT TGAGCCTCCTGCCCCAGCGAGAGGGCTGCCTGAGGGCATATTTTCGGCAC TAGTGCGCCTGTTTTCCGCAAGGAACGACAGTAGGGGGGGGGGGGGCTTG CCTGCCGGTTGGGCATTCCTGGTGTCTGGAATAGTGCCGGTTGGGCATTC CTGGTGTCTGGAATAGTGCCGGTTGGGAATTCCTGGTGTCTGGAATAGTG CCGGTTGGGAATTCCTGGTGTCTGGAATAGTGCCGGTTGGGCATTCCTGG TGTCCGGAAAGTGTTAGTTAGTAGGCTGGCATAGACTGAGTCACCCAGCA TTTGGCACGTTGAATAGTTCCGGTGTCCGGTATATGTAGTGAAGGTCAAT TCTCCGAGCACATACCGGTACCAAACAGCCCCCCCCGCTAGAATGTCTGA CGCTAACCCCCTCCATGTGACACCAAATAAAACGAAACTATGGATACTAC AATCCTCAAGAGAGTTTCCCAACACTTACGGGATGACAGCAGTAGTGGGG ATGTGATATTCCTGAAGTGTGCATGTACACGGATTCCTTAGTGTCGCCGC AGAGACAACCTTGATGGTGTGGTCCCGAGAGCATCAAGTGCCGCTCAGGG GAGCTGTGCCGAAAGTCCTCGTGGGATGGGGGCTGCTTAAACGAGCATCG GCAGCCCGCGAGCCGACTGGCCCGTGTGATGCTTTTGGCTGTGTCTTTGT CTCTGTCTCTGTCTCTTTGTCCCTGCCTTTCTCACTCTCTCTCTGTCTGT ATACCTCTCTCCCTCCCTCTCTCTCTCTGCCCCCCCTCTATATCTCTCTC TCAATCTCTCTCTCTCTCCCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTTTCGAACGCCGACAGGCGAGAGATTTTGTCGCTGGCGTGAT GCGAAAAAATCTTCGGGAGATCCACCGACAACAAAAGAAAACTACAAAGA GCGCGGGACATGACGACACCGCTGACTCCCGGCCGCAAGGACAGATCGGA GGTCAGCGCGGCGTGACGACTAACTTGAGAGGAGTTGACAACCTGCTCTC TCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCGATA GTCCACGGGATTATCGCCGTATTTTTCGCGCATCGAGAACTCGGAACTTT TTGGACTCGGTTTTGTTGTCCGCGACACGAACGCGACCGGTGTGGTAATG AGGCAGCTGTTTGCTTGAGATAACTTGACAACCGGTTCTCTCTCGGCACG TCCTTGAGATCATCCTCCGTTTACCCGCACATCGAGAAATCGGAACGTTT TGTACTCGTTTTTGTTGTCCTCTAGACTAAACTGGTCCGGCGGGAAATTG TGGCGATATGTGTTGTCGTTGAAAGAACGTGACAGCCCGTTCTCTCTCGG AACAACCACGATGTGGGCTGCGCATCGTTCCCGTTCAAAGTGTGGGCTGG GATATGACTATCTGTTATCTGTTTCCGGGATTTCGGCTAGCATGACGGAC AAGTAGCCGAAAAGGGAGTCGAAGCCAACGTCCTTTGTACATGACGGCAA ATAGTGAAGCGTTATGCGAAGGGCAGGAGCTTTTACATTGCAGAGCCCGA AATTCTTGAGTTCACGAAACAAGTGCGACCGACAGGTTGTTGATTGGTGC GCCGGCACGCGCGCGCATGCAACACAGGATACATCCGAAGGTTTGTGGGG GCAGACAGAAACGCCATTCCCGGCGACGAGGCCCTGGAGGCAGCCACGGT ACAAGCCTTGAAAAATCTTGAACGTTTCTGGATCGTGGGCGTGGTGGAAC AGTACACGGGTCTCCTGGAGGTCTGGAGGCGTTCCCTCGACCCCGGAGAC AAGCACGGCCGCCTCTGGAACAAGTACGCGGCGATGCAGTTCAATTCGTG AGTATGATGGTTGTTGTCATGTGGGGATAGTTTGACAATTGTTCGTCCGT TAGGGGCAGAGATTTTCTGTTGTCACGGCTGTGTTGCGTCTCTCTCTGGA CATCCTACGCGAGGATTACGTTACAATTCTATGGGGGGGGGTTCCTTTCC CTGTCCCCAACCCTAACCCCGAACCCCACTCCGCAGCCCATACTAAAGTC AAGATAAAATATACCATATCTCGCGAAGGCTGTGCTGCTCTCTCTCCCTC CCGACGGCCCACCCGCAACTGAATGGCCTGTGTAATTGTTGGTGGCGCTT GTTGCGCGGTTGGTGTTGACATGCTTGGCGGCACAAGCCACAACCACACA AGACTGGGGCCAAGCTCCTTGGGCGCCATTCCCTTCCCTCGACGTGTATT CCCCCGGCCGGAGGGGGTGGCACCGTGGTATACATATTATTTGTCTGCAG TACCCTACACGCTATTGCGTACCAACCTCTGTTCGAAATATTTGGACCGT TGGGACAATCACATTGCAGTAGAGGTCACTGTATAGTGCCGGTGTGTGCC CAGAAAATGCATTGGCGCAATACCGGACCGGTACCATTCAAAGCACCGAA ACCAATTGGAAATTCAGTGTGTACCCGCCGAAAACACCGCACTATACCGA GCATCGGCACTAAACAGGGACCTCTACACTAGCATTCGATGGTGATTATA GTTCCTATATAAAATTGCAGTTACGAAAAGCTATCCCCAACAACTCACGA GCTTGACCGTAAGATCTGGTGGTCAGTCGAGTATCCTACGCTGAAACGTT TGTAGTCGATGTTGGCATATTTCCCACAAGAAAGGAAACTAATCTTGAGC AACAAAATGGTTTCTAAATACGTGTGCGGGCGCATTCTGTGTATCCCACT GCTCCCTCCTGGCAGTAGAGTTCATCCACGCACTTTATCATCCCCTTTCA GGTCTCCCGTGGGTTCTCGAGAGGTTCTGGCTTTGATAGACCCGGAGCTC GTGCGACACTTCAACGGCTCTCTCGCGTTGCAGTGGGAGGTGTACGAGAG AGCCGTTGGACTCTGGGGGATCCGCTGCCGGGAAGTTCTGCCGGATACGC TGCACGAGGAAATGTGCACGGTGCCCCCCCCCTGGTCGTTATAGAGTGGT AGACGCTCTGCGCCGTAGGTGGCAGAGGATGCCACCCCCGTGCCGTGCGC CGATTTGTCAAAGGCTCTTCGGTCGCCTTGCGACGACGAGGAGGATGCAT ACATGAAGCGATGACATACTTTCGGAAAGCTCGCGACGAGACCGTTCGAA AGGCGACGTTTTTCGGCACCGCCACAATTTCTGTATGGGAGCGTTGAGAA AAGGCAAAGGGGGTGTGATATCTTCCGCTTCCCGAGCAGATGGGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig152:50351..54946+

>mRNA_E-siliculosus-1a_F_contig152.3014.1 ID=mRNA_E-siliculosus-1a_F_contig152.3014.1|Name=mRNA_E-siliculosus-1a_F_contig152.3014.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1308bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig152:50351..54946+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGGATGTGGGGTTTCCAACGGCACGTGCATACGCCATATCTTCTGA
TCACGGCGTTGAGGAATCCTCTCGAGGTGTTCGTGTCCGGGCAGCAGTAC
ATACACCGGAAGGAGACCAAAACGCTCGGACAGGTTTCCAACGGCACGTG
CATACGCCATATCTTCTGATCACGGCGTTGAGGAATCCTCTCGAGGTGTT
CGTGTCCGGGCAGCAGTACATACACCGGAAGGAGACCAAAACGCTCGGAC
AGGCGAGAGATTTTGTCGCTGGCGTGATGCGAAAAAATCTTCGGGAGATC
CACCGACAACAAAAGAAAACTACAAAGAGCGCGGGACATGACGACACCGC
TGACTCCCGGCCGCAAGGACAGATCGGAGGCGAGAGATTTTGTCGCTGGC
GTGATGCGAAAAAATCTTCGGGAGATCCACCGACAACAAAAGAAAACTAC
AAAGAGCGCGGGACATGACGACACCGCTGACTCCCGGCCGCAAGGACAGA
TCGGAGGATACATCCGAAGGTTTGTGGGGGCAGACAGAAACGCCATTCCC
GGCGACGAGGCCCTGGAGGCAGCCACGGTACAAGCCTTGAAAAATCTTGA
ACGTTTCTGGATCGTGGGCGTGGTGGAACAGTACACGGGTCTCCTGGAGG
TCTGGAGGCGTTCCCTCGACCCCGGAGACAAGCACGGCCGCCTCTGGAAC
AAGTACGCGGCGATGCAGTTCAATTCGATACATCCGAAGGTTTGTGGGGG
CAGACAGAAACGCCATTCCCGGCGACGAGGCCCTGGAGGCAGCCACGGTA
CAAGCCTTGAAAAATCTTGAACGTTTCTGGATCGTGGGCGTGGTGGAACA
GTACACGGGTCTCCTGGAGGTCTGGAGGCGTTCCCTCGACCCCGGAGACA
AGCACGGCCGCCTCTGGAACAAGTACGCGGCGATGCAGTTCAATTCGTCT
CCCGTGGGTTCTCGAGAGGTTCTGGCTTTGATAGACCCGGAGCTCGTGCG
ACACTTCAACGGCTCTCTCGCGTTGCAGTGGGAGGTGTACGAGAGAGCCG
TTGGACTCTGGGGGATCCGCTGCCGGGAAGTTCTGCCGGATACGCTGCAC
GAGGAAGTCTCCCGTGGGTTCTCGAGAGGTTCTGGCTTTGATAGACCCGG
AGCTCGTGCGACACTTCAACGGCTCTCTCGCGTTGCAGTGGGAGGTGTAC
GAGAGAGCCGTTGGACTCTGGGGGATCCGCTGCCGGGAAGTTCTGCCGGA
TACGCTGCACGAGGAACCCCCCCCCTGGTCGTTATAGCCCCCCCCCTGGT
CGTTATAG
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