mRNA_E-siliculosus-1a_F_contig15198.3012.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 284 bits (726), Expect = 6.500e-90 Identity = 151/222 (68.02%), Postives = 177/222 (79.73%), Query Frame = 3
Query: 3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
VV CG LPL+LAIAGSMSVV+G+GLTA AWEELIK FEN M G +++S+ +VLG SF ALAA+K+++ L+M VLA GA APIEMLRNLWE ED +G REEA+ L SK LLQ VGG G YR+HDLVL FVK I+A+ EMV K TALQA +LGR+DVL+ + +PEHG GNQGLF LDALWRSVE+LSG+ +LEVASY SLGELESCEAT DVA SY
Sbjct: 204 VVVLCGHLPLVLAIAGSMSVVKGKGLTAVAWEELIKEFENVAKKMRVRGEQSSSIKVVLGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWEIEDAEGTREEAEGLVSKCLLQAVGGSG-YRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSY 424
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 283 bits (724), Expect = 3.210e-85 Identity = 152/223 (68.16%), Postives = 178/223 (79.82%), Query Frame = 3
Query: 3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSYS 671
VV CGRLPL+LAIAGS+ VV+G+GLTAGAW +LI EN VT M S ++ SL++VL SF AL +K++ F + AVLAPGA A EML NLWETED G RE+A+ L SK LLQDVGGGG YR+HDLVL+FVKIKIKAD+EM +K+ ALQA FLGRL+VL+ + +PEHG GNQGLFVLDALWRSVE+LSG+ KLEV SYSTSL LESCEATT VA SYS
Sbjct: 340 VVTLCGRLPLVLAIAGSLPVVKGKGLTAGAWGKLIDELENVVTKMEASLEDSNSLNVVLETSFDALTFRKKQAFKKTAVLAPGAVASTEMLLNLWETEDTGGTREDAEGLVSKCLLQDVGGGG-YRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYS 561
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 273 bits (699), Expect = 1.260e-81 Identity = 141/219 (64.38%), Postives = 174/219 (79.45%), Query Frame = 3
Query: 3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVA 659
VV RCGRLPL+LAIAGSM VV+G+GL GAWEELI+ FEN T+MWE G E+ +LDMVLGASF+ALAA+KR++FL MAVLAPGA AP EMLRNLWE +D +G +EEA+ L +K LLQDV G G YR+HDL+L ++++KIK D E V+K TALQA +LGRLDV+ + + +HG NQGLF L LWR +E+LSG+ LE ASY LGEL+SCEAT +VA
Sbjct: 440 VVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQDVEGTKEEAEGLVNKCLLQDVDGVG-YRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSYGDQKHGADNQGLFGLGTLWRCLEKLSGDPVLETASYRAILGELDSCEATAEVA 657
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 272 bits (695), Expect = 1.060e-80 Identity = 145/222 (65.32%), Postives = 172/222 (77.48%), Query Frame = 3
Query: 3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
VVA CG LPL+LAIAGSMSVV G+GLTA AWEEL K EN M G +++S+ +VL SF +LA +K+++FL+MAVLA GA APIEMLRNLWE ED +G R++A+ L SK LL VGGGG YR+HDLVL F K I+A+ E V+K TALQA +LGRLDVL G+ +PEHG G QGLF LDALWRSVE+LSG+ +LEVASY SLGELESCEAT VA SY
Sbjct: 463 VVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEVEDAEGTRDDAEGLVSKCLLHAVGGGG-YRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSY 683
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 265 bits (678), Expect = 3.130e-78 Identity = 143/222 (64.41%), Postives = 170/222 (76.58%), Query Frame = 3
Query: 3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
VVA CG LPL+LAIAGSMSVV G+GLTA AWEEL K EN M G +++S+ +VL SF +LA +K+++FL+MAVLA GA APIEMLRNLWE ED +G R++A+ L SK LL VGGGG YR+HDLVL F K I+A+ E V+K TALQA +LGRLDVL + +PEHG G+QGLF LDALWRSVE+LSG+ LEVASY SL ELESCEAT VA SY
Sbjct: 446 VVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEIEDAEGTRDDAEGLVSKCLLHAVGGGG-YRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSY 666
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 262 bits (669), Expect = 5.270e-77 Identity = 137/223 (61.43%), Postives = 171/223 (76.68%), Query Frame = 3
Query: 3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSYS 671
VVA CG LPL+LAIAGSMS V+G+GLTA AWEEL K FEN M G +++++ +VL SF +LA +K+++FL M+VLA GA APIEMLRNLWE ED +G R+EA+ L +K LL VG GG YR+HD+VL F K I+AD E V K TALQA FLGRLDVL+ + +PEHG G++GLF LD+LWRSVE+LSG+ +LEV +Y SL ELESC+AT D+A SYS
Sbjct: 421 VVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSFENVAKKMRARGQQSSAIKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVNKCLLHAVGDGG-YRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYS 642
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE) HSP 1 Score: 247 bits (631), Expect = 2.340e-75 Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 3
Query: 33 MLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEM 437
MLAIAGSMSVVEGRGLTAGAWEELIKLFENT TMMWESGLEATSLDMVLGASFSALAAKKRK+FL+MAVLAPGA API MLRNLWETEDNKGAREEAD LTSKSLLQDVGGGGGYR+HDLVL+FVKIK+KADVEM
Sbjct: 1 MLAIAGSMSVVEGRGLTAGAWEELIKLFENTATMMWESGLEATSLDMVLGASFSALAAKKRKEFLKMAVLAPGAVAPIAMLRNLWETEDNKGAREEADGLTSKSLLQDVGGGGGYRVHDLVLDFVKIKVKADVEM 135
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 252 bits (644), Expect = 1.120e-73 Identity = 136/222 (61.26%), Postives = 166/222 (74.77%), Query Frame = 3
Query: 3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
VVA CG LPL+LAIAGSMS V+G+GLTA AWEEL K FEN M G +++S+ +VL +F +LA +K+K+FL MAVLA GA APIEML NLWE ED +G EA+ L SK LL VGGGG YR+HDLVL+F K I+A+ E V++ TALQA +LGRLDV+ + +PEHG G+QG+F LDALWRSVE+LSG+ +LEVASY SLG LE EAT A SY
Sbjct: 247 VVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEFENVAKKMRARGQQSSSIKVVLETTFDSLATRKQKEFLMMAVLAAGALAPIEMLSNLWEIEDAEGTHAEAEGLVSKYLLHAVGGGG-YRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSY 467
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 244 bits (622), Expect = 4.730e-73 Identity = 140/251 (55.78%), Postives = 170/251 (67.73%), Query Frame = 3
Query: 3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPG-----------------------------AAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
VVA CG LPL+LAIAGSMSVV+G+GLTA AW+EL + EN M G +++S++ VL SF +LA +K+++FL++AVLA A APIEMLRNLWE ED +G R+EA+ L SK LL VGGGG YR+HDLVL + K +I+AD EMVRKVTALQAHFLGRLDVL+ + +PEHG GNQ LF LDALWRSVE+LSG+ +LEVA LESCEAT VA SY
Sbjct: 409 VVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENLENVAKKMRARGEQSSSINAVLETSFDSLAVRKQEEFLKLAVLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPIEMLRNLWEIEDAEGTRDEAEGLVSKCLLHAVGGGG-YRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEVA--------LESCEATEAVARSY 650
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5JY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE) HSP 1 Score: 127 bits (319), Expect = 5.010e-34 Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 3
Query: 435 MVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSYS 671
MV K T LQAHFLG LDVL+ + NPEHG NQGLFVLDALWRSVE+LSG+S+LEVASYSTSLGELESC+ATTDVA SYS
Sbjct: 1 MVEKATTLQAHFLGTLDVLKDYENPEHGADNQGLFVLDALWRSVEKLSGDSELEVASYSTSLGELESCKATTDVASSYS 79 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig15198.3012.1 >prot_E-siliculosus-1a_F_contig15198.3012.1 ID=prot_E-siliculosus-1a_F_contig15198.3012.1|Name=mRNA_E-siliculosus-1a_F_contig15198.3012.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=213bp MLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGback to top mRNA from alignment at E-siliculosus-1a_F_contig15198:20..865+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig15198.3012.1 ID=mRNA_E-siliculosus-1a_F_contig15198.3012.1|Name=mRNA_E-siliculosus-1a_F_contig15198.3012.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=846bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15198:20..865+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15198:20..865+ >mRNA_E-siliculosus-1a_F_contig15198.3012.1 ID=mRNA_E-siliculosus-1a_F_contig15198.3012.1|Name=mRNA_E-siliculosus-1a_F_contig15198.3012.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15198:20..865+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |