mRNA_E-siliculosus-1a_F_contig15198.3012.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15198.3012.1
Unique NamemRNA_E-siliculosus-1a_F_contig15198.3012.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 6.500e-90
Identity = 151/222 (68.02%), Postives = 177/222 (79.73%), Query Frame = 3
Query:    3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
            VV  CG LPL+LAIAGSMSVV+G+GLTA AWEELIK FEN    M   G +++S+ +VLG SF ALAA+K+++ L+M VLA GA APIEMLRNLWE ED +G REEA+ L SK LLQ VGG G YR+HDLVL FVK  I+A+ EMV K TALQA +LGR+DVL+ + +PEHG GNQGLF LDALWRSVE+LSG+ +LEVASY  SLGELESCEAT DVA SY
Sbjct:  204 VVVLCGHLPLVLAIAGSMSVVKGKGLTAVAWEELIKEFENVAKKMRVRGEQSSSIKVVLGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWEIEDAEGTREEAEGLVSKCLLQAVGGSG-YRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSY 424          
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 3.210e-85
Identity = 152/223 (68.16%), Postives = 178/223 (79.82%), Query Frame = 3
Query:    3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSYS 671
            VV  CGRLPL+LAIAGS+ VV+G+GLTAGAW +LI   EN VT M  S  ++ SL++VL  SF AL  +K++ F + AVLAPGA A  EML NLWETED  G RE+A+ L SK LLQDVGGGG YR+HDLVL+FVKIKIKAD+EM +K+ ALQA FLGRL+VL+ + +PEHG GNQGLFVLDALWRSVE+LSG+ KLEV SYSTSL  LESCEATT VA SYS
Sbjct:  340 VVTLCGRLPLVLAIAGSLPVVKGKGLTAGAWGKLIDELENVVTKMEASLEDSNSLNVVLETSFDALTFRKKQAFKKTAVLAPGAVASTEMLLNLWETEDTGGTREDAEGLVSKCLLQDVGGGG-YRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYS 561          
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 1.260e-81
Identity = 141/219 (64.38%), Postives = 174/219 (79.45%), Query Frame = 3
Query:    3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVA 659
            VV RCGRLPL+LAIAGSM VV+G+GL  GAWEELI+ FEN  T+MWE G E+ +LDMVLGASF+ALAA+KR++FL MAVLAPGA AP EMLRNLWE +D +G +EEA+ L +K LLQDV G G YR+HDL+L ++++KIK D E V+K TALQA +LGRLDV+  + + +HG  NQGLF L  LWR +E+LSG+  LE ASY   LGEL+SCEAT +VA
Sbjct:  440 VVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQDVEGTKEEAEGLVNKCLLQDVDGVG-YRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSYGDQKHGADNQGLFGLGTLWRCLEKLSGDPVLETASYRAILGELDSCEATAEVA 657          
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 1.060e-80
Identity = 145/222 (65.32%), Postives = 172/222 (77.48%), Query Frame = 3
Query:    3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
            VVA CG LPL+LAIAGSMSVV G+GLTA AWEEL K  EN    M   G +++S+ +VL  SF +LA +K+++FL+MAVLA GA APIEMLRNLWE ED +G R++A+ L SK LL  VGGGG YR+HDLVL F K  I+A+ E V+K TALQA +LGRLDVL G+ +PEHG G QGLF LDALWRSVE+LSG+ +LEVASY  SLGELESCEAT  VA SY
Sbjct:  463 VVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEVEDAEGTRDDAEGLVSKCLLHAVGGGG-YRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSY 683          
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 3.130e-78
Identity = 143/222 (64.41%), Postives = 170/222 (76.58%), Query Frame = 3
Query:    3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
            VVA CG LPL+LAIAGSMSVV G+GLTA AWEEL K  EN    M   G +++S+ +VL  SF +LA +K+++FL+MAVLA GA APIEMLRNLWE ED +G R++A+ L SK LL  VGGGG YR+HDLVL F K  I+A+ E V+K TALQA +LGRLDVL  + +PEHG G+QGLF LDALWRSVE+LSG+  LEVASY  SL ELESCEAT  VA SY
Sbjct:  446 VVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEIEDAEGTRDDAEGLVSKCLLHAVGGGG-YRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSY 666          
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 5.270e-77
Identity = 137/223 (61.43%), Postives = 171/223 (76.68%), Query Frame = 3
Query:    3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSYS 671
            VVA CG LPL+LAIAGSMS V+G+GLTA AWEEL K FEN    M   G +++++ +VL  SF +LA +K+++FL M+VLA GA APIEMLRNLWE ED +G R+EA+ L +K LL  VG GG YR+HD+VL F K  I+AD E V K TALQA FLGRLDVL+ + +PEHG G++GLF LD+LWRSVE+LSG+ +LEV +Y  SL ELESC+AT D+A SYS
Sbjct:  421 VVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSFENVAKKMRARGQQSSAIKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVNKCLLHAVGDGG-YRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYS 642          
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.340e-75
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 3
Query:   33 MLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEM 437
            MLAIAGSMSVVEGRGLTAGAWEELIKLFENT TMMWESGLEATSLDMVLGASFSALAAKKRK+FL+MAVLAPGA API MLRNLWETEDNKGAREEAD LTSKSLLQDVGGGGGYR+HDLVL+FVKIK+KADVEM
Sbjct:    1 MLAIAGSMSVVEGRGLTAGAWEELIKLFENTATMMWESGLEATSLDMVLGASFSALAAKKRKEFLKMAVLAPGAVAPIAMLRNLWETEDNKGAREEADGLTSKSLLQDVGGGGGYRVHDLVLDFVKIKVKADVEM 135          
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 1.120e-73
Identity = 136/222 (61.26%), Postives = 166/222 (74.77%), Query Frame = 3
Query:    3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
            VVA CG LPL+LAIAGSMS V+G+GLTA AWEEL K FEN    M   G +++S+ +VL  +F +LA +K+K+FL MAVLA GA APIEML NLWE ED +G   EA+ L SK LL  VGGGG YR+HDLVL+F K  I+A+ E V++ TALQA +LGRLDV+  + +PEHG G+QG+F LDALWRSVE+LSG+ +LEVASY  SLG LE  EAT   A SY
Sbjct:  247 VVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEFENVAKKMRARGQQSSSIKVVLETTFDSLATRKQKEFLMMAVLAAGALAPIEMLSNLWEIEDAEGTHAEAEGLVSKYLLHAVGGGG-YRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSY 467          
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 4.730e-73
Identity = 140/251 (55.78%), Postives = 170/251 (67.73%), Query Frame = 3
Query:    3 VVARCGRLPLMLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLGASFSALAAKKRKDFLEMAVLAPG-----------------------------AAAPIEMLRNLWETEDNKGAREEADFLTSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSY 668
            VVA CG LPL+LAIAGSMSVV+G+GLTA AW+EL +  EN    M   G +++S++ VL  SF +LA +K+++FL++AVLA                               A APIEMLRNLWE ED +G R+EA+ L SK LL  VGGGG YR+HDLVL + K +I+AD EMVRKVTALQAHFLGRLDVL+ + +PEHG GNQ LF LDALWRSVE+LSG+ +LEVA        LESCEAT  VA SY
Sbjct:  409 VVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENLENVAKKMRARGEQSSSINAVLETSFDSLAVRKQEEFLKLAVLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPIEMLRNLWEIEDAEGTRDEAEGLVSKCLLHAVGGGG-YRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEVA--------LESCEATEAVARSY 650          
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Match: A0A6H5JY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 5.010e-34
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 3
Query:  435 MVRKVTALQAHFLGRLDVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELESCEATTDVAGSYS 671
            MV K T LQAHFLG LDVL+ + NPEHG  NQGLFVLDALWRSVE+LSG+S+LEVASYSTSLGELESC+ATTDVA SYS
Sbjct:    1 MVEKATTLQAHFLGTLDVLKDYENPEHGADNQGLFVLDALWRSVEKLSGDSELEVASYSTSLGELESCKATTDVASSYS 79          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15198.3012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5LJA6_9PHAE6.500e-9068.02NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KU94_9PHAE3.210e-8568.16NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LPV9_ECTSI1.260e-8164.38NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D7G722_ECTSI1.060e-8065.32NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI3.130e-7864.41NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI5.270e-7761.43NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JUC1_9PHAE2.340e-7593.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7FUD7_ECTSI1.120e-7361.26NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE4.730e-7355.78NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JY23_9PHAE5.010e-3481.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15198contigE-siliculosus-1a_F_contig15198:20..865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size639
Model size672
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03019,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
EggNOG free text desc.determination of stomach left/right asymmetry
KEGG Pathwayko05132,map05132
KEGG koko:K10407
Seed eggNOG ortholog2880.D7G722
Seed ortholog evalue2.8e-66
Seed ortholog score258.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15198.3012.1prot_E-siliculosus-1a_F_contig15198.3012.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15198 52..865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928029.7036226-UTR-E-siliculosus-1a_F_contig15198:19..511622928029.7036226-UTR-E-siliculosus-1a_F_contig15198:19..51Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15198 20..51 +
1696318779.302512-UTR-E-siliculosus-1a_F_contig15198:19..511696318779.302512-UTR-E-siliculosus-1a_F_contig15198:19..51Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15198 20..51 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928029.7197587-CDS-E-siliculosus-1a_F_contig15198:51..3151622928029.7197587-CDS-E-siliculosus-1a_F_contig15198:51..315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15198 52..315 +
1696318779.3130598-CDS-E-siliculosus-1a_F_contig15198:51..3151696318779.3130598-CDS-E-siliculosus-1a_F_contig15198:51..315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15198 52..315 +
1622928029.7317684-CDS-E-siliculosus-1a_F_contig15198:490..8651622928029.7317684-CDS-E-siliculosus-1a_F_contig15198:490..865Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15198 491..865 +
1696318779.3217862-CDS-E-siliculosus-1a_F_contig15198:490..8651696318779.3217862-CDS-E-siliculosus-1a_F_contig15198:490..865Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15198 491..865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15198.3012.1

>prot_E-siliculosus-1a_F_contig15198.3012.1 ID=prot_E-siliculosus-1a_F_contig15198.3012.1|Name=mRNA_E-siliculosus-1a_F_contig15198.3012.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=213bp
MLAIAGSMSVVEGRGLTAGAWEELIKLFENTVTMMWESGLEATSLDMVLG
ASFSALAAKKRKDFLEMAVLAPGAAAPIEMLRNLWETEDNKGAREEADFL
TSKSLLQDVGGGGGYRLHDLVLNFVKIKIKADVEMVRKVTALQAHFLGRL
DVLRGFYNPEHGPGNQGLFVLDALWRSVEELSGNSKLEVASYSTSLGELE
SCEATTDVAGSYS
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mRNA from alignment at E-siliculosus-1a_F_contig15198:20..865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15198.3012.1 ID=mRNA_E-siliculosus-1a_F_contig15198.3012.1|Name=mRNA_E-siliculosus-1a_F_contig15198.3012.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=846bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15198:20..865+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGTTGTTGCGCGCTGTGGACGCCTGCCGCTGATGCTCGCCATCGCGGGT TCCATGTCCGTCGTGGAAGGGAGGGGCCTGACCGCCGGCGCTTGGGAAGA GCTGATCAAGCTCTTCGAGAACACGGTGACGATGATGTGGGAGTCGGGAC TAGAGGCGACATCTCTGGATATGGTCCTTGGCGCCAGCTTCAGTGCTTTG GCAGCCAAGAAGCGGAAGGATTTTCTTGAGATGGCTGTGTTGGCGCCGGG TGCTGCTGCGCCGATCGAGATGCTGCGAAATCTGTGGGAGACAGAGGTCC GTTGCGGCGTCATCCCTACCTGGGTGCTTTGTTTGCAGATGAATGCCTAT TGGAGGATAGACGCGTTGTGTGGGTTGCGTGAAAGGTTGGACAGGCGCTG CTCCTCTACATTCTTCCTTGTGTCCTGTGGGCTGAGGTCGATGCATGTCT TCCCTGTTGTTCAATTCGCAGGACAACAAGGGTGCGCGAGAGGAAGCTGA CTTTTTAACGAGCAAGAGCCTGCTGCAAGATGTGGGTGGTGGTGGTGGGT ATCGCTTACATGACCTCGTTCTGAACTTCGTGAAGATCAAGATCAAGGCA GACGTGGAGATGGTACGAAAGGTTACCGCGCTTCAGGCGCATTTCCTCGG AAGACTGGATGTGCTTAGGGGTTTTTACAATCCAGAGCATGGTCCTGGCA ACCAAGGCTTGTTCGTTTTGGATGCCCTCTGGCGCTCGGTGGAAGAGCTC TCGGGAAACTCGAAACTGGAGGTCGCCTCGTATAGCACCAGCCTCGGGGA GTTGGAGTCGTGCGAGGCGACTACGGATGTGGCTGGTTCCTACTCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15198:20..865+

>mRNA_E-siliculosus-1a_F_contig15198.3012.1 ID=mRNA_E-siliculosus-1a_F_contig15198.3012.1|Name=mRNA_E-siliculosus-1a_F_contig15198.3012.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15198:20..865+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCGCCATCGCGGGTTCCATGTCCGTCGTGGAAGGGAGGGGCCTGAC
CGCCGGCGCTTGGGAAGAGCTGATCAAGCTCTTCGAGAACACGGTGACGA
TGATGTGGGAGTCGGGACTAGAGGCGACATCTCTGGATATGGTCCTTGGC
GCCAGCTTCAGTGCTTTGGCAGCCAAGAAGCGGAAGGATTTTCTTGAGAT
GGCTGTGTTGGCGCCGGGTGCTGCTGCGCCGATCGAGATGCTGCGAAATC
TGTGGGAGACAGAGATGCTCGCCATCGCGGGTTCCATGTCCGTCGTGGAA
GGGAGGGGCCTGACCGCCGGCGCTTGGGAAGAGCTGATCAAGCTCTTCGA
GAACACGGTGACGATGATGTGGGAGTCGGGACTAGAGGCGACATCTCTGG
ATATGGTCCTTGGCGCCAGCTTCAGTGCTTTGGCAGCCAAGAAGCGGAAG
GATTTTCTTGAGATGGCTGTGTTGGCGCCGGGTGCTGCTGCGCCGATCGA
GATGCTGCGAAATCTGTGGGAGACAGAGGACAACAAGGGTGCGCGAGAGG
AAGCTGACTTTTTAACGAGCAAGAGCCTGCTGCAAGATGTGGGTGGTGGT
GGTGGGTATCGCTTACATGACCTCGTTCTGAACTTCGTGAAGATCAAGAT
CAAGGCAGACGTGGAGATGGTACGAAAGGTTACCGCGCTTCAGGCGCATT
TCCTCGGAAGACTGGATGTGCTTAGGGGTTTTTACAATCCAGAGCATGGT
CCTGGCAACCAAGGCTTGTTCGTTTTGGATGCCCTCTGGCGCTCGGTGGA
AGAGCTCTCGGGAAACTCGAAACTGGAGGTCGCCTCGTATAGCACCAGCC
TCGGGGAGTTGGAGTCGTGCGAGGCGACTACGGATGTGGCTGGTTCCTAC
TCTGACAACAAGGGTGCGCGAGAGGAAGCTGACTTTTTAACGAGCAAGAG
CCTGCTGCAAGATGTGGGTGGTGGTGGTGGGTATCGCTTACATGACCTCG
TTCTGAACTTCGTGAAGATCAAGATCAAGGCAGACGTGGAGATGGTACGA
AAGGTTACCGCGCTTCAGGCGCATTTCCTCGGAAGACTGGATGTGCTTAG
GGGTTTTTACAATCCAGAGCATGGTCCTGGCAACCAAGGCTTGTTCGTTT
TGGATGCCCTCTGGCGCTCGGTGGAAGAGCTCTCGGGAAACTCGAAACTG
GAGGTCGCCTCGTATAGCACCAGCCTCGGGGAGTTGGAGTCGTGCGAGGC
GACTACGGATGTGGCTGGTTCCTACTCT
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