mRNA_E-siliculosus-1a_F_contig15195.3011.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15195.3011.1
Unique NamemRNA_E-siliculosus-1a_F_contig15195.3011.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: UPI00164D1D04 (hypothetical protein n=1 Tax=Flavobacterium muglaense TaxID=2764716 RepID=UPI00164D1D04)

HSP 1 Score: 126 bits (316), Expect = 1.590e-34
Identity = 66/116 (56.90%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 FDVPEGSLFGTATVGDGLEFDDYLLTLYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITLE 348
            F+ P+GSL  TA + + +EF  YLL LYD+DI + +I F LVA A   TY + FR +EAG+ DRYY  F SAQNV+ FTSSD +  LR+DS T LV+EI EGFNFNP   FTITL+
Sbjct:   60 FNAPKGSLEATAKLSESVEFPAYLLGLYDIDINQSTINFKLVAKAGDATYGNFFRVLEAGSTDRYYFTFDSAQNVKSFTSSDPAAKLRMDSSTVLVVEIGEGFNFNPDANFTITLK 175          
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: A0A4R7K3I1_9FLAO (Uncharacterized protein n=1 Tax=Maribacter spongiicola TaxID=1206753 RepID=A0A4R7K3I1_9FLAO)

HSP 1 Score: 128 bits (321), Expect = 1.420e-33
Identity = 71/115 (61.74%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 FDVPEGSLFGTATVGDGLEFDDYLLTLYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITL 345
            F VP GSL  T TV +G+EF  YLL LYDVD+ E+SI +TLVA A    Y S FRTIEAG+ DRYY+ F    NV+ FTSSD +V LRIDS T LV+EI EGF F PG +FTITL
Sbjct:  222 FGVPAGSLEATTTVVEGVEFPAYLLGLYDVDVNENSIEYTLVAQAGDPNYGSLFRTIEAGSFDRYYITFGLEHNVESFTSSDPAVNLRIDSDTILVVEIGEGFVFEPGASFTITL 336          
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: A0A3A9WYT5_9FLAO (Uncharacterized protein n=2 Tax=Aquimarina sp. AD1 TaxID=1714848 RepID=A0A3A9WYT5_9FLAO)

HSP 1 Score: 123 bits (309), Expect = 3.920e-33
Identity = 67/115 (58.26%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 FDVPEGSLFGTATVGDGLEFDDYLLTLYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITL 345
            F  P GSL  TAT+ + +EF  YLL LYD+DI +++I+F LVA     TY   FRT+E GT DRYY  F   QNV GFTS +  VTLRIDS + LV+EI  GFNFNPGT+FTITL
Sbjct:   88 FMQPAGSLEVTATIENAVEFPAYLLGLYDIDIDQNTISFELVAQTGDATYGDLFRTLETGTFDRYYFTFDEPQNVSGFTSDNDYVTLRIDSNSVLVVEIGAGFNFNPGTSFTITL 202          
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: A0A176SYP0_9FLAO (Uncharacterized protein n=4 Tax=Polaribacter TaxID=52959 RepID=A0A176SYP0_9FLAO)

HSP 1 Score: 122 bits (306), Expect = 5.170e-33
Identity = 63/115 (54.78%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 FDVPEGSLFGTATVGDGLEFDDYLLTLYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITL 345
            F  P G+L  T+++ + +EF  YLL LYD+DI ++SI+F LVA A+  TY   FR +EA T DRYY  F + Q+V GFTSS++SV LRIDS T LV+EI EG++F PG +FTITL
Sbjct:   60 FHQPAGALAATSSISESVEFPSYLLNLYDIDIDKNSISFELVAKANDATYGDLFRVMEADTYDRYYFTFENTQDVNGFTSSNASVNLRIDSDTVLVVEIGEGYDFKPGQSFTITL 174          
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: A0A1H7UQN4_9FLAO (Uncharacterized protein n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A1H7UQN4_9FLAO)

HSP 1 Score: 118 bits (295), Expect = 5.470e-31
Identity = 63/115 (54.78%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    1 FDVPEGSLFGTATVGDGLEFDDYLLTLYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITL 345
            F  P GSL  TAT+ + +EF  YLL LYD+DI +++I+F LVA A   TY   FRT+E GT DRYY  F   QNV GF++ + SV LRID+   LV+EI EGF F PG +FTITL
Sbjct:   91 FMQPAGSLEATATIENAVEFPAYLLGLYDIDIDQNTISFELVAQAGDATYGDLFRTLETGTTDRYYFTFDEPQNVSGFSTDNDSVGLRIDANNVLVVEIGEGFEFQPGASFTITL 205          
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: A0A1M6QCW8_9FLAO (Uncharacterized protein n=3 Tax=Maribacter TaxID=252356 RepID=A0A1M6QCW8_9FLAO)

HSP 1 Score: 114 bits (286), Expect = 5.850e-29
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    4 DVPEGSLFGTATVGDGLEFDDYLLTLYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITL 345
            D    +L  TAT+ D +EF  YLL LYDVDI E+SI F + A     TY   FRTIEAG+ DRYYL F    NV+ FTSSD++V LRIDS   LV++I EGF F PG +F+IT+
Sbjct:   72 DADPTALSATATIEDAVEFPSYLLGLYDVDIDENSINFQMTAQTGDATYGGFFRTIEAGSFDRYYLTFDEPHNVKSFTSSDAAVNLRIDSDNVLVVQIGEGFVFQPGASFSITV 185          
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: A0A150ALP8_9BACT (Uncharacterized protein n=4 Tax=Flammeovirga TaxID=59739 RepID=A0A150ALP8_9BACT)

HSP 1 Score: 110 bits (275), Expect = 2.640e-28
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   16 GSLFGTATVGDGLEFDDYLLTLYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITL 345
            G     AT+   +EF  Y+  LYD++I+E +ITF ++AP D  T+S  +R IEAGT DRYYL F +AQNV+GFTSS+ +V LRIDS   LV+EIS+G++FNP   FTITL
Sbjct:   68 GDFAADATLSSSVEFPAYI-GLYDINISETTITFDVIAPEDDPTFSGFWRIIEAGTFDRYYLTFENAQNVKGFTSSNPNVRLRIDSEKVLVVEISQGYDFNPDQKFTITL 176          
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: UPI00082B5D1F (hypothetical protein n=1 Tax=Labilibacter marinus TaxID=1477105 RepID=UPI00082B5D1F)

HSP 1 Score: 90.9 bits (224), Expect = 2.770e-19
Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 1
Query:   79 LYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITL 345
            LY +D++E+SIT+ L+  A+ E + +N+RT+EAG +DRYYL F+   NV  FT+S+ ++ LRID+   LV+E+ EGF F PG  F+I+L
Sbjct:   89 LYAIDLSENSITYKLLPSAEDEFWKTNYRTLEAGVKDRYYLTFSENHNVSDFTASNPAINLRIDANNVLVVEVGEGFVFQPGAAFSISL 177          
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: UPI0015581CE2 (hypothetical protein n=1 Tax=unclassified Lentimicrobium TaxID=2677434 RepID=UPI0015581CE2)

HSP 1 Score: 85.9 bits (211), Expect = 1.900e-17
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   79 LYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITLE 348
            LY +DI E+SI + L+  A+   +S N+R +E G  DRYY  F  A  V  F+S++++V LRIDS   LV+EI EGFNF PG  FTI L+
Sbjct:  275 LYSIDINENSIDYVLLPDANDYFWSQNYRVLEEGVYDRYYFTFDEAHGVTSFSSTENAVNLRIDSDKILVVEIGEGFNFQPGAAFTIDLK 364          
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Match: A0A1H4XM09_9FLAO (Uncharacterized protein n=1 Tax=Tenacibaculum sp. MAR_2009_124 TaxID=1250059 RepID=A0A1H4XM09_9FLAO)

HSP 1 Score: 76.3 bits (186), Expect = 6.830e-14
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   19 SLFGTATVGDGLEFDDYLLTLYDVDIAEDSITFTLVAPADSETYSSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEISEGFNFNPGTTFTITL 345
            S F TA   +G    D +  LY++++ ++SI++T++  A    +S+ F    AG  DRYY  F+   NV GF+S++  + +RIDS T LV+E+SEG++  PG +F I+L
Sbjct:  284 SEFSTALAQNGTPAGD-ISGLYNINLTQNSISYTVLPEATDPFWSNVFGLFPAGKTDRYYFTFSQPHNVTGFSSNEEWINVRIDSDTVLVVELSEGYDLQPGVSFDISL 391          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15195.3011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI00164D1D041.590e-3456.90hypothetical protein n=1 Tax=Flavobacterium muglae... [more]
A0A4R7K3I1_9FLAO1.420e-3361.74Uncharacterized protein n=1 Tax=Maribacter spongii... [more]
A0A3A9WYT5_9FLAO3.920e-3358.26Uncharacterized protein n=2 Tax=Aquimarina sp. AD1... [more]
A0A176SYP0_9FLAO5.170e-3354.78Uncharacterized protein n=4 Tax=Polaribacter TaxID... [more]
A0A1H7UQN4_9FLAO5.470e-3154.78Uncharacterized protein n=3 Tax=Flavobacteriaceae ... [more]
A0A1M6QCW8_9FLAO5.850e-2954.39Uncharacterized protein n=3 Tax=Maribacter TaxID=2... [more]
A0A150ALP8_9BACT2.640e-2854.55Uncharacterized protein n=4 Tax=Flammeovirga TaxID... [more]
UPI00082B5D1F2.770e-1948.31hypothetical protein n=1 Tax=Labilibacter marinus ... [more]
UPI0015581CE21.900e-1748.89hypothetical protein n=1 Tax=unclassified Lentimic... [more]
A0A1H4XM09_9FLAO6.830e-1438.53Uncharacterized protein n=1 Tax=Tenacibaculum sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15195contigE-siliculosus-1a_F_contig15195:649..999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size351
Model size351
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928029.6700633-CDS-E-siliculosus-1a_F_contig15195:648..9991622928029.6700633-CDS-E-siliculosus-1a_F_contig15195:648..999Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15195 649..999 -
1696318779.2927308-CDS-E-siliculosus-1a_F_contig15195:648..9991696318779.2927308-CDS-E-siliculosus-1a_F_contig15195:648..999Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15195 649..999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15195.3011.1prot_E-siliculosus-1a_F_contig15195.3011.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15195 649..999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15195.3011.1

>prot_E-siliculosus-1a_F_contig15195.3011.1 ID=prot_E-siliculosus-1a_F_contig15195.3011.1|Name=mRNA_E-siliculosus-1a_F_contig15195.3011.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=117bp
FDVPEGSLFGTATVGDGLEFDDYLLTLYDVDIAEDSITFTLVAPADSETY
SSNFRTIEAGTEDRYYLNFTSAQNVQGFTSSDSSVTLRIDSPTTLVIEIS
EGFNFNPGTTFTITLE*
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mRNA from alignment at E-siliculosus-1a_F_contig15195:649..999-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15195.3011.1 ID=mRNA_E-siliculosus-1a_F_contig15195.3011.1|Name=mRNA_E-siliculosus-1a_F_contig15195.3011.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=351bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15195:649..999- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTGATGTTCCGGAAGGTTCTTTGTTTGGTACGGCAACCGTTGGTGACGG TCTTGAGTTTGATGACTATTTATTGACCTTGTACGATGTTGATATTGCCG AAGATAGCATCACCTTTACCCTAGTTGCTCCTGCCGATAGTGAAACCTAC AGCAGTAACTTTAGAACCATTGAAGCCGGTACGGAAGACCGCTACTATTT AAATTTCACAAGCGCTCAAAACGTTCAGGGATTTACCTCAAGTGACTCCT CGGTTACATTGAGAATAGATTCACCAACAACATTGGTTATTGAGATTAGT GAAGGATTTAATTTCAATCCAGGAACGACCTTTACCATAACTTTAGAATA A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15195:649..999-

>mRNA_E-siliculosus-1a_F_contig15195.3011.1 ID=mRNA_E-siliculosus-1a_F_contig15195.3011.1|Name=mRNA_E-siliculosus-1a_F_contig15195.3011.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15195:649..999- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTGATGTTCCGGAAGGTTCTTTGTTTGGTACGGCAACCGTTGGTGACGG
TCTTGAGTTTGATGACTATTTATTGACCTTGTACGATGTTGATATTGCCG
AAGATAGCATCACCTTTACCCTAGTTGCTCCTGCCGATAGTGAAACCTAC
AGCAGTAACTTTAGAACCATTGAAGCCGGTACGGAAGACCGCTACTATTT
AAATTTCACAAGCGCTCAAAACGTTCAGGGATTTACCTCAAGTGACTCCT
CGGTTACATTGAGAATAGATTCACCAACAACATTGGTTATTGAGATTAGT
GAAGGATTTAATTTCAATCCAGGAACGACCTTTACCATAACTTTAGAATA
ATTTGATGTTCCGGAAGGTTCTTTGTTTGGTACGGCAACCGTTGGTGACG
GTCTTGAGTTTGATGACTATTTATTGACCTTGTACGATGTTGATATTGCC
GAAGATAGCATCACCTTTACCCTAGTTGCTCCTGCCGATAGTGAAACCTA
CAGCAGTAACTTTAGAACCATTGAAGCCGGTACGGAAGACCGCTACTATT
TAAATTTCACAAGCGCTCAAAACGTTCAGGGATTTACCTCAAGTGACTCC
TCGGTTACATTGAGAATAGATTCACCAACAACATTGGTTATTGAGATTAG
TGAAGGATTTAATTTCAATCCAGGAACGACCTTTACCATAACTTTAGAAT
AA
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