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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 495 |
| Model size | 834 |
| Exons | 2 |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928029.2202907-CDS-E-siliculosus-1a_F_contig1519:29847..29907 | 1622928029.2202907-CDS-E-siliculosus-1a_F_contig1519:29847..29907 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1519 29848..29907 + |
| 1696318779.015997-CDS-E-siliculosus-1a_F_contig1519:29847..29907 | 1696318779.015997-CDS-E-siliculosus-1a_F_contig1519:29847..29907 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1519 29848..29907 + |
| 1622928029.2306604-CDS-E-siliculosus-1a_F_contig1519:29926..30361 | 1622928029.2306604-CDS-E-siliculosus-1a_F_contig1519:29926..30361 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1519 29927..30361 + |
| 1696318779.0256793-CDS-E-siliculosus-1a_F_contig1519:29926..30361 | 1696318779.0256793-CDS-E-siliculosus-1a_F_contig1519:29926..30361 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1519 29927..30361 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1519.3010.1 >prot_E-siliculosus-1a_F_contig1519.3010.1 ID=prot_E-siliculosus-1a_F_contig1519.3010.1|Name=mRNA_E-siliculosus-1a_F_contig1519.3010.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=165bp
MLCVAAVLLFSSLLLLLLLLCLGGGQCVRPALHATPFLCTAWRAQFNTEQ
KKCGPRSDESKLSAQNHRTKHHTHKKKKQRGLPRALETVSYRRLHYVRYH
TPLEPFSKLQYSTTKRKLNEIKRQVFGKLSTRRLFQHLPPFSAPSLFVLP
SKQSSFENRPREGV* back to topmRNA from alignment at E-siliculosus-1a_F_contig1519:29716..30568+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1519.3010.1 ID=mRNA_E-siliculosus-1a_F_contig1519.3010.1|Name=mRNA_E-siliculosus-1a_F_contig1519.3010.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=853bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1519:29716..30568+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGTTCACCTGATAGAGCCAGCCGTCGGGTACGTTACTTTTTGTTTTTT
GTTTTTTGGGGTGTTGTCGTCGACGTCGTCGGGGTGGTGGTGCTGTTGGT
ATTGTTGGTGTTGGTGGTGGTTGTGTTGTCACATGCTGTGTGTTGCTGCT
GTGCTGTTGTTCTCGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTG
GTCCTCGTCGTTGTTTGGGTGGGGGGCAGTGTGTGCGGCCTGCTTTACAC
GCCACGCCGTTTCTATGCACGGCATGGCGTGCACAATTCAACACAGAACA
AAAAAAATGTGGCCCACGATCGGATGAATCCAAGCTCTCGGCACAAAATC
ACCGAACAAAACATCATACACACAAAAAAAAAAAACAACGAGGTCTTCCA
CGCGCGCTTGAAACAGTCAGCTACCGTAGGTTGCATTACGTAAGATACCA
CACACCCCTGGAACCATTTTCCAAGCTTCAGTACTCGACGACGAAGAGGA
AGCTGAATGAAATCAAACGACAAGTCTTCGGAAAGCTTTCGACGAGACGG
TTGTTCCAACACCTCCCGCCGTTCTCGGCACCGTCACTGTTTGTCCTGCC
GAGTAAGCAATCGAGCTTTGAAAACCGGCCCAGGGAGGGGGTGTGACGTC
TTTATGCGAACATACGGCGTACGGCAGCTATAGGGTAAAAAGGGCTTCCT
AGGGACCCCTTACATCTATCACGAGAAAAAAAACGCCAGCGAGTTAGCGT
CACGGCTAAACTGATAGGACCTTCATCTGAACAATGACAACGCACCGCCA
GCCAGGTAGCGTGTCAGGGCTAACCTGTCTCACCTCTACCCGGAGGGCTT
GAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1519:29716..30568+ >mRNA_E-siliculosus-1a_F_contig1519.3010.1 ID=mRNA_E-siliculosus-1a_F_contig1519.3010.1|Name=mRNA_E-siliculosus-1a_F_contig1519.3010.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=990bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1519:29716..30568+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGTGTGTTGCTGCTGTGCTGTTGTTCTCGTCGTTGTTGTTGTTGTT
GTTGTTGTTGATGCTGTGTGTTGCTGCTGTGCTGTTGTTCTCGTCGTTGT
TGTTGTTGTTGTTGTTGTTGTGTTTGGGTGGGGGGCAGTGTGTGCGGCCT
GCTTTACACGCCACGCCGTTTCTATGCACGGCATGGCGTGCACAATTCAA
CACAGAACAAAAAAAATGTGGCCCACGATCGGATGAATCCAAGCTCTCGG
CACAAAATCACCGAACAAAACATCATACACACAAAAAAAAAAAACAACGA
GGTCTTCCACGCGCGCTTGAAACAGTCAGCTACCGTAGGTTGCATTACGT
AAGATACCACACACCCCTGGAACCATTTTCCAAGCTTCAGTACTCGACGA
CGAAGAGGAAGCTGAATGAAATCAAACGACAAGTCTTCGGAAAGCTTTCG
ACGAGACGGTTGTTCCAACACCTCCCGCCGTTCTCGGCACCGTCACTGTT
TGTCCTGCCGAGTAAGCAATCGAGCTTTGAAAACCGGCCCAGGGAGGGGG
TGTGATGTTTGGGTGGGGGGCAGTGTGTGCGGCCTGCTTTACACGCCACG
CCGTTTCTATGCACGGCATGGCGTGCACAATTCAACACAGAACAAAAAAA
ATGTGGCCCACGATCGGATGAATCCAAGCTCTCGGCACAAAATCACCGAA
CAAAACATCATACACACAAAAAAAAAAAACAACGAGGTCTTCCACGCGCG
CTTGAAACAGTCAGCTACCGTAGGTTGCATTACGTAAGATACCACACACC
CCTGGAACCATTTTCCAAGCTTCAGTACTCGACGACGAAGAGGAAGCTGA
ATGAAATCAAACGACAAGTCTTCGGAAAGCTTTCGACGAGACGGTTGTTC
CAACACCTCCCGCCGTTCTCGGCACCGTCACTGTTTGTCCTGCCGAGTAA
GCAATCGAGCTTTGAAAACCGGCCCAGGGAGGGGGTGTGA back to top
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