mRNA_E-siliculosus-1a_F_contig1517.3003.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1517.3003.1
Unique NamemRNA_E-siliculosus-1a_F_contig1517.3003.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: A0A6H5L8F4_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8F4_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.750e-31
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1
Query:    1 REFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDA 177
            REFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDA
Sbjct:  181 REFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDA 239          
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: D7FPG9_ECTSI (BTB (POZ) domain containing 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPG9_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 3.400e-31
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1
Query:    1 REFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDA 177
            REFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDA
Sbjct:  155 REFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDA 213          
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: A0A090X8G6_IXORI (BTB domain-containing protein (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A090X8G6_IXORI)

HSP 1 Score: 71.2 bits (173), Expect = 5.800e-13
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   16 HRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDAGK 183
            HR++ ASCS+YFRALLYGGM ES+ + V LRD   E FE ++RY+YTG++ +   K
Sbjct:   37 HRLVLASCSSYFRALLYGGMRESQEKEVVLRDTPREAFELLLRYIYTGQLQLSGLK 92          
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: B7PM70_IXOSC (BTB and poz domain-containing protein, putative n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7PM70_IXOSC)

HSP 1 Score: 70.5 bits (171), Expect = 7.640e-13
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   16 HRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSV 171
            HR++ ASCS+YFRALLYGGM ES+   V LRD   E FE ++RY+YTG++ +
Sbjct:   65 HRLILASCSSYFRALLYGGMRESQEEEVVLRDTPREAFELLLRYIYTGQLQL 116          
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: A0A4D5S142_IXOSC (BTB domain-containing protein (Fragment) n=4 Tax=Ixodes TaxID=6944 RepID=A0A4D5S142_IXOSC)

HSP 1 Score: 70.5 bits (171), Expect = 1.080e-12
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   16 HRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSV 171
            HR++ ASCS+YFRALLYGGM ES+   V LRD   E FE ++RY+YTG++ +
Sbjct:  110 HRLILASCSSYFRALLYGGMRESQEEEVVLRDTPREAFELLLRYIYTGQLQL 161          
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: UPI00193E4750 (BTB/POZ domain-containing protein 9 n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E4750)

HSP 1 Score: 67.8 bits (164), Expect = 9.650e-12
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 EFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDAGK 183
             F  H+V+ A+ S YFRALLYGGM ES    +EL+D + E F+A+++Y+YTG +S+ + K
Sbjct:   46 RFHAHKVILAARSEYFRALLYGGMKESHQAEIELKDTSIEAFKALLKYIYTGHLSLTSVK 105          
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: A0A7R9FSK5_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9FSK5_9CRUS)

HSP 1 Score: 67.0 bits (162), Expect = 1.800e-11
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 EFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVD 174
             F+CH+V+ A+ S YFRALLYGGM ES    + L++ +   F A+++Y+YTGK+S++
Sbjct:   47 RFKCHKVILAARSEYFRALLYGGMKESRESEIHLKNTSLAAFRALLQYIYTGKMSLN 103          
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: A0A812C0G9_SEPPH (BTBD9 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812C0G9_SEPPH)

HSP 1 Score: 66.6 bits (161), Expect = 2.450e-11
Identity = 29/61 (47.54%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    7 FRCHRVLFASCSAYFRALLYGGMSESE--TRRVELRDVTPEGFEAIMRYVYTGKVSVDAGK 183
            F+CH+V+ A+ S YFRALLYGGM ES+  T+ +EL++ + + F+A+ RY+YTG++++   K
Sbjct:   85 FKCHKVILAARSEYFRALLYGGMLESQPGTKEIELQNTSAKAFDALQRYMYTGRMNLVEAK 145          
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: A0A7M7KW05_VARDE (BTB/POZ domain-containing protein 9 n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7KW05_VARDE)

HSP 1 Score: 66.2 bits (160), Expect = 3.360e-11
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   10 RCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDAGK 183
            + HR++ ASC  YFRALLYGGM ES  + VEL D   + F+ ++RY+YTG++S+   K
Sbjct:   45 QAHRLVLASCCEYFRALLYGGMRESTQKEVELPDAPLKAFKLLLRYIYTGRLSLSGLK 102          
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Match: A0A8J1U5F6_OWEFU (BTB/POZ domain-containing protein 9 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U5F6_OWEFU)

HSP 1 Score: 66.2 bits (160), Expect = 3.360e-11
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    4 EFRCHRVLFASCSAYFRALLYGGMSESE--TRRVELRDVTPEGFEAIMRYVYTGKVSV 171
            EF  HRV+ AS S YFRALL+GG+ ES+     +EL+D TP+ F  +++Y+YTG+V++
Sbjct:   46 EFHAHRVILASRSDYFRALLFGGLRESQPGVSTIELKDTTPDAFRHLLKYIYTGRVNL 103          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8F4_9PHAE1.750e-31100.00BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FPG9_ECTSI3.400e-31100.00BTB (POZ) domain containing 9 n=1 Tax=Ectocarpus s... [more]
A0A090X8G6_IXORI5.800e-1355.36BTB domain-containing protein (Fragment) n=1 Tax=I... [more]
B7PM70_IXOSC7.640e-1357.69BTB and poz domain-containing protein, putative n=... [more]
A0A4D5S142_IXOSC1.080e-1257.69BTB domain-containing protein (Fragment) n=4 Tax=I... [more]
UPI00193E47509.650e-1248.33BTB/POZ domain-containing protein 9 n=1 Tax=Nilapa... [more]
A0A7R9FSK5_9CRUS1.800e-1147.37Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A812C0G9_SEPPH2.450e-1147.54BTBD9 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A... [more]
A0A7M7KW05_VARDE3.360e-1150.00BTB/POZ domain-containing protein 9 n=1 Tax=Varroa... [more]
A0A8J1U5F6_OWEFU3.360e-1150.00BTB/POZ domain-containing protein 9 n=1 Tax=Owenia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1517contigE-siliculosus-1a_F_contig1517:31153..31338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size186
Model size186
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG4350@1,KOG4350@2759
EggNOG free text desc.circadian sleep/wake cycle, non-REM sleep
KEGG koko:K10480
Seed eggNOG ortholog2880.D7FPG9
Seed ortholog evalue7e-26
Seed ortholog score122.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928028.412688-CDS-E-siliculosus-1a_F_contig1517:31152..313381622928028.412688-CDS-E-siliculosus-1a_F_contig1517:31152..31338Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1517 31153..31338 +
1696318778.4452353-CDS-E-siliculosus-1a_F_contig1517:31152..313381696318778.4452353-CDS-E-siliculosus-1a_F_contig1517:31152..31338Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1517 31153..31338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1517.3003.1prot_E-siliculosus-1a_F_contig1517.3003.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1517 31153..31338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1517.3003.1

>prot_E-siliculosus-1a_F_contig1517.3003.1 ID=prot_E-siliculosus-1a_F_contig1517.3003.1|Name=mRNA_E-siliculosus-1a_F_contig1517.3003.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=62bp
REFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYV
YTGKVSVDAGK*
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mRNA from alignment at E-siliculosus-1a_F_contig1517:31153..31338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1517.3003.1 ID=mRNA_E-siliculosus-1a_F_contig1517.3003.1|Name=mRNA_E-siliculosus-1a_F_contig1517.3003.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=186bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1517:31153..31338+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGAGAGTTCAGGTGCCATCGTGTCTTGTTCGCCTCGTGCTCGGCGTACTT CCGCGCTCTGCTGTACGGCGGTATGAGCGAATCGGAGACAAGGAGGGTCG AGTTGAGAGACGTCACGCCGGAAGGGTTTGAGGCCATCATGAGATACGTC TACACCGGAAAAGTTAGCGTGGATGCGGGTAAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1517:31153..31338+

>mRNA_E-siliculosus-1a_F_contig1517.3003.1 ID=mRNA_E-siliculosus-1a_F_contig1517.3003.1|Name=mRNA_E-siliculosus-1a_F_contig1517.3003.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1517:31153..31338+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGAGAGTTCAGGTGCCATCGTGTCTTGTTCGCCTCGTGCTCGGCGTACTT
CCGCGCTCTGCTGTACGGCGGTATGAGCGAATCGGAGACAAGGAGGGTCG
AGTTGAGAGACGTCACGCCGGAAGGGTTTGAGGCCATCATGAGATACGTC
TACACCGGAAAAGTTAGCGTGGATGCGGGTAAGTGAAGAGAGTTCAGGTG
CCATCGTGTCTTGTTCGCCTCGTGCTCGGCGTACTTCCGCGCTCTGCTGT
ACGGCGGTATGAGCGAATCGGAGACAAGGAGGGTCGAGTTGAGAGACGTC
ACGCCGGAAGGGTTTGAGGCCATCATGAGATACGTCTACACCGGAAAAGT
TAGCGTGGATGCGGGTAAGTGA
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