mRNA_E-siliculosus-1a_F_contig1516.2993.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 390 bits (1002), Expect = 2.480e-131 Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 3
Query: 159 MFAGPLLLALAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 704
MFAGPLLLALAVSSASDGGSC+TYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEG VYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRL APYGEMEHNLVRSCDNA
Sbjct: 1 MFAGPLLLALAVSSASDGGSCSTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDNA 182
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE) HSP 1 Score: 358 bits (918), Expect = 1.100e-118 Identity = 169/189 (89.42%), Postives = 173/189 (91.53%), Query Frame = 3
Query: 138 MNKSLLTMFAGPLLLALAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 704
MNKSL TMFA LLLALAVSSASDGGSCTTYDEDLEVAKLLD TCEWDTYMCC+TNHDSGEGVTANTDVCSVP+EG SVYCHGFAWP+GADVNNHILPLYHYVKNIGRTEEEGGYYG+VEGAPECGCIEEMPQVSFAECSRF IDGI CGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA
Sbjct: 1 MNKSLFTMFALSLLLALAVSSASDGGSCTTYDEDLEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVPNEG---------SVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 180
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 278 bits (711), Expect = 1.370e-83 Identity = 128/179 (71.51%), Postives = 146/179 (81.56%), Query Frame = 3
Query: 192 VSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP 713
+ + DG SC+TYDED+EVAKLLD TCEWDTYMCC+T D +G+TAN+DVC V P EG EMP DSEGSVYCHGFAW EGADV+ HILPLYHYVKN+GRTEE GG+YGNVEGAPECGCIEEMPQVS++ECSR+S +GI CG GL SQY GRLG PYG M+ NLVR+CDN +P
Sbjct: 138 MENPDDGASCSTYDEDVEVAKLLDSTCEWDTYMCCWTGSDGADGMTANSDVCRVLDYPEEGDSFEMPRDSEGSVYCHGFAWVEGADVDTHILPLYHYVKNVGRTEE-GGFYGNVEGAPECGCIEEMPQVSYSECSRYSWEGIVGCGNNGLLSQYRGRLGEPYGPMDDNLVRTCDNEDVP 315
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 243 bits (620), Expect = 7.940e-71 Identity = 123/207 (59.42%), Postives = 144/207 (69.57%), Query Frame = 3
Query: 207 DGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LPGEADGREGKFRRVRTTTCVTA-TRSVPVGKLDN 809
DG C+TYDED+ VA LL CEW+TYMCC+T +D +G+T+NTDVC V P EG LE P DSEGSVYCHGF W +GADVN +ILPLYH V N GRTEE GGYYGNVEGAP+CGC+EEMP VSF+ECSRF DGI +CGE GLYS Y R+ P G +E NLVR CDN +P + FR + T + T + G LDN
Sbjct: 91 DGEVCSTYDEDVHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEE-GGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDNYDVP------DFDFRECDSHTYMCCWTENDAKGVLDN 290
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 242 bits (617), Expect = 4.320e-70 Identity = 114/183 (62.30%), Postives = 135/183 (73.77%), Query Frame = 3
Query: 192 VSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYY----GNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP 713
+ + DG SC+TY+E +EVAKLLD TCEWD YMCC+T +D +G+TAN+DVC V P EG EMP +SEG V CHGFAW EGADV+ HILPLYHYVKN+GRTEE G Y +VEG PECGCIEE+P VS +ECSR+S +GI CG GL SQY G LG P G M+ NLVR+CDN +P
Sbjct: 20 MENPDDGASCSTYEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDNEDIP 202
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 237 bits (605), Expect = 1.770e-65 Identity = 108/181 (59.67%), Postives = 131/181 (72.38%), Query Frame = 3
Query: 186 LAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP 713
+ + + DG SC+TYDED++VA +L TCEW+TYMCC+T HD G+ NTDVC V P EG LE+P D EG VYCHGFAW +GAD+++HILPLYHYV N+ RT++ GGYYGNVEG P CGCIE+MP VS A CSRF +GI CG L S Y RL P GE+E+NLVR CDN +P
Sbjct: 107 IPMENPEDGMSCSTYDEDVDVANILPETCEWNTYMCCWTGHDGSGGMYGNTDVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDD-GGYYGNVEGVPSCGCIEDMPVVSDAACSRFGREGIEPCGANSLRSHYKNRLDEPKGELEYNLVRECDNEDVP 286
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 231 bits (588), Expect = 2.220e-65 Identity = 105/181 (58.01%), Postives = 131/181 (72.38%), Query Frame = 3
Query: 186 LAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP 713
+ + + DG SC+TYDED++VA +L TCEW+TYMCC+T HD +G+ N DVC V P EG LE+P D EG VYCHGFAW + AD+++HILPLYHYV N+ RT++ GGYYGNVEG P CGCIE+MP VS A CS+F +GI C + L SQY +L P GEME+NLVR CDN +P
Sbjct: 150 IPMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDD-GGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVP 329
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE) HSP 1 Score: 215 bits (548), Expect = 3.770e-62 Identity = 117/265 (44.15%), Postives = 142/265 (53.58%), Query Frame = 3
Query: 240 LEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP-----------------------------------------------------GEAD--------GREGKFRRVRTTTCVTA-TRSVPVGKLDNLGGDCDNA 833
++VA +L TCEW+TYMCC+T HD +G+ N DVC V P EG LE+P D EG VYCHGFAW +GAD+++HILPLYHYV N+ RT++ GGYYGNVEG P CGCIE+MP VS A CS+F +GI C + L SQY +L P GEME+NLVR CDN +P EAD GREGKF T P+G+L NL G+CDNA
Sbjct: 4 VDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLNYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDD-GGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGGSEGEVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELSNLVGECDNA 267
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 117 bits (294), Expect = 1.040e-26 Identity = 78/199 (39.20%), Postives = 106/199 (53.27%), Query Frame = 3
Query: 144 KSLLTMFAGPLLLALAVS----SASDGGSCTTYD---EDLEVAKLLD-GTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIG-----ECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 701
K++L + GPLLLA VS SA + YD ++ E+ K D C+++T+MCC+ + G V NTDVCS E E PGDSEG V+CHGF WPE A ++ I L V I +E+ Y GN+ GAP C C+EEMP+VS A+C+++ + C + L Y P G LV+ CDN
Sbjct: 9 KAILAVCIGPLLLAPTVSARTSSAFADAENSFYDYSGDEFELVKNFDFNQCDYNTWMCCWDGRN-GLAVKDNTDVCSYRGE--EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKA-YTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELY--PTGRGRDLLVKKCDN 200
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 115 bits (289), Expect = 2.370e-25 Identity = 78/199 (39.20%), Postives = 105/199 (52.76%), Query Frame = 3
Query: 144 KSLLTMFAGPLLLALAVS----SASDGGSCTTYD---EDLEVAKLLD-GTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIG-----ECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 701
K++L + GPLLLA VS SA + YD ++ E K D C+++T+MCC+ + G V NTDVCS E E PGDSEG V+CHGF WPE A ++ I L V I +E+ Y GN+ GAP C C+EEMP+VS A+C+++ + C + L Y P G LV+ CDN
Sbjct: 73 KAVLAVCIGPLLLAPTVSARTSSAFADAENSFYDYSGDEFERVKNFDFNQCDYNTWMCCWDGRN-GLAVKDNTDVCSYRGE--EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKA-YTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELY--PTGRGRDLLVKKCDN 264 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1516.2993.1 >prot_E-siliculosus-1a_F_contig1516.2993.1 ID=prot_E-siliculosus-1a_F_contig1516.2993.1|Name=mRNA_E-siliculosus-1a_F_contig1516.2993.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=190bp MNKSLLTMFAGPLLLALAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYback to top mRNA from alignment at E-siliculosus-1a_F_contig1516:19022..22739+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1516.2993.1 ID=mRNA_E-siliculosus-1a_F_contig1516.2993.1|Name=mRNA_E-siliculosus-1a_F_contig1516.2993.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3718bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1516:19022..22739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1516:19022..22739+ >mRNA_E-siliculosus-1a_F_contig1516.2993.1 ID=mRNA_E-siliculosus-1a_F_contig1516.2993.1|Name=mRNA_E-siliculosus-1a_F_contig1516.2993.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1516:19022..22739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |