mRNA_E-siliculosus-1a_F_contig1516.2993.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1516.2993.1
Unique NamemRNA_E-siliculosus-1a_F_contig1516.2993.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI)

HSP 1 Score: 390 bits (1002), Expect = 2.480e-131
Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 3
Query:  159 MFAGPLLLALAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 704
            MFAGPLLLALAVSSASDGGSC+TYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEG VYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRL APYGEMEHNLVRSCDNA
Sbjct:    1 MFAGPLLLALAVSSASDGGSCSTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDNA 182          
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE)

HSP 1 Score: 358 bits (918), Expect = 1.100e-118
Identity = 169/189 (89.42%), Postives = 173/189 (91.53%), Query Frame = 3
Query:  138 MNKSLLTMFAGPLLLALAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 704
            MNKSL TMFA  LLLALAVSSASDGGSCTTYDEDLEVAKLLD TCEWDTYMCC+TNHDSGEGVTANTDVCSVP+EG         SVYCHGFAWP+GADVNNHILPLYHYVKNIGRTEEEGGYYG+VEGAPECGCIEEMPQVSFAECSRF IDGI  CGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA
Sbjct:    1 MNKSLFTMFALSLLLALAVSSASDGGSCTTYDEDLEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVPNEG---------SVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 180          
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 1.370e-83
Identity = 128/179 (71.51%), Postives = 146/179 (81.56%), Query Frame = 3
Query:  192 VSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP 713
            + +  DG SC+TYDED+EVAKLLD TCEWDTYMCC+T  D  +G+TAN+DVC V   P EG   EMP DSEGSVYCHGFAW EGADV+ HILPLYHYVKN+GRTEE GG+YGNVEGAPECGCIEEMPQVS++ECSR+S +GI  CG  GL SQY GRLG PYG M+ NLVR+CDN  +P
Sbjct:  138 MENPDDGASCSTYDEDVEVAKLLDSTCEWDTYMCCWTGSDGADGMTANSDVCRVLDYPEEGDSFEMPRDSEGSVYCHGFAWVEGADVDTHILPLYHYVKNVGRTEE-GGFYGNVEGAPECGCIEEMPQVSYSECSRYSWEGIVGCGNNGLLSQYRGRLGEPYGPMDDNLVRTCDNEDVP 315          
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 7.940e-71
Identity = 123/207 (59.42%), Postives = 144/207 (69.57%), Query Frame = 3
Query:  207 DGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LPGEADGREGKFRRVRTTTCVTA-TRSVPVGKLDN 809
            DG  C+TYDED+ VA LL   CEW+TYMCC+T +D  +G+T+NTDVC V   P EG  LE P DSEGSVYCHGF W +GADVN +ILPLYH V N GRTEE GGYYGNVEGAP+CGC+EEMP VSF+ECSRF  DGI +CGE GLYS Y  R+  P G +E NLVR CDN  +P      +  FR   + T +   T +   G LDN
Sbjct:   91 DGEVCSTYDEDVHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEE-GGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDNYDVP------DFDFRECDSHTYMCCWTENDAKGVLDN 290          
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 4.320e-70
Identity = 114/183 (62.30%), Postives = 135/183 (73.77%), Query Frame = 3
Query:  192 VSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYY----GNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP 713
            + +  DG SC+TY+E +EVAKLLD TCEWD YMCC+T +D  +G+TAN+DVC V   P EG   EMP +SEG V CHGFAW EGADV+ HILPLYHYVKN+GRTEE G Y      +VEG PECGCIEE+P VS +ECSR+S +GI  CG  GL SQY G LG P G M+ NLVR+CDN  +P
Sbjct:   20 MENPDDGASCSTYEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDNEDIP 202          
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.770e-65
Identity = 108/181 (59.67%), Postives = 131/181 (72.38%), Query Frame = 3
Query:  186 LAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP 713
            + + +  DG SC+TYDED++VA +L  TCEW+TYMCC+T HD   G+  NTDVC V   P EG  LE+P D EG VYCHGFAW +GAD+++HILPLYHYV N+ RT++ GGYYGNVEG P CGCIE+MP VS A CSRF  +GI  CG   L S Y  RL  P GE+E+NLVR CDN  +P
Sbjct:  107 IPMENPEDGMSCSTYDEDVDVANILPETCEWNTYMCCWTGHDGSGGMYGNTDVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDD-GGYYGNVEGVPSCGCIEDMPVVSDAACSRFGREGIEPCGANSLRSHYKNRLDEPKGELEYNLVRECDNEDVP 286          
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 2.220e-65
Identity = 105/181 (58.01%), Postives = 131/181 (72.38%), Query Frame = 3
Query:  186 LAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP 713
            + + +  DG SC+TYDED++VA +L  TCEW+TYMCC+T HD  +G+  N DVC V   P EG  LE+P D EG VYCHGFAW + AD+++HILPLYHYV N+ RT++ GGYYGNVEG P CGCIE+MP VS A CS+F  +GI  C +  L SQY  +L  P GEME+NLVR CDN  +P
Sbjct:  150 IPMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDD-GGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVP 329          
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 3.770e-62
Identity = 117/265 (44.15%), Postives = 142/265 (53.58%), Query Frame = 3
Query:  240 LEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*LP-----------------------------------------------------GEAD--------GREGKFRRVRTTTCVTA-TRSVPVGKLDNLGGDCDNA 833
            ++VA +L  TCEW+TYMCC+T HD  +G+  N DVC V   P EG  LE+P D EG VYCHGFAW +GAD+++HILPLYHYV N+ RT++ GGYYGNVEG P CGCIE+MP VS A CS+F  +GI  C +  L SQY  +L  P GEME+NLVR CDN  +P                                                      EAD        GREGKF         T      P+G+L NL G+CDNA
Sbjct:    4 VDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLNYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDD-GGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGGSEGEVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELSNLVGECDNA 267          
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.040e-26
Identity = 78/199 (39.20%), Postives = 106/199 (53.27%), Query Frame = 3
Query:  144 KSLLTMFAGPLLLALAVS----SASDGGSCTTYD---EDLEVAKLLD-GTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIG-----ECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 701
            K++L +  GPLLLA  VS    SA      + YD   ++ E+ K  D   C+++T+MCC+   + G  V  NTDVCS   E  E PGDSEG V+CHGF WPE A  ++ I  L   V  I   +E+  Y GN+ GAP C C+EEMP+VS A+C+++    +       C +  L   Y      P G     LV+ CDN
Sbjct:    9 KAILAVCIGPLLLAPTVSARTSSAFADAENSFYDYSGDEFELVKNFDFNQCDYNTWMCCWDGRN-GLAVKDNTDVCSYRGE--EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKA-YTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELY--PTGRGRDLLVKKCDN 200          
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.370e-25
Identity = 78/199 (39.20%), Postives = 105/199 (52.76%), Query Frame = 3
Query:  144 KSLLTMFAGPLLLALAVS----SASDGGSCTTYD---EDLEVAKLLD-GTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGSVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIG-----ECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 701
            K++L +  GPLLLA  VS    SA      + YD   ++ E  K  D   C+++T+MCC+   + G  V  NTDVCS   E  E PGDSEG V+CHGF WPE A  ++ I  L   V  I   +E+  Y GN+ GAP C C+EEMP+VS A+C+++    +       C +  L   Y      P G     LV+ CDN
Sbjct:   73 KAVLAVCIGPLLLAPTVSARTSSAFADAENSFYDYSGDEFERVKNFDFNQCDYNTWMCCWDGRN-GLAVKDNTDVCSYRGE--EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKA-YTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELY--PTGRGRDLLVKKCDN 264          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FT53_ECTSI2.480e-13198.35Imm downregulated 17 n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L9G6_9PHAE1.100e-11889.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT55_ECTSI1.370e-8371.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT54_ECTSI7.940e-7159.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L319_9PHAE4.320e-7062.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2N2_ECTSI1.770e-6559.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N0_ECTSI2.220e-6558.01Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JT81_9PHAE3.770e-6244.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8D2_ECTSI1.040e-2639.20Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI2.370e-2539.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1516contigE-siliculosus-1a_F_contig1516:19022..22739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size570
Model size1764
Exons6
Ec32 orthologEc-19_003550.1
Ec32 ortholog descriptionimm downregulated 17
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2E0FN@1,2S7W7@2759
Seed eggNOG ortholog2880.D7FT55
Seed ortholog evalue8.9e-72
Seed ortholog score276.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1516.2993.1prot_E-siliculosus-1a_F_contig1516.2993.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1516 20016..21682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.0979621-UTR-E-siliculosus-1a_F_contig1516:19021..191441622928027.0979621-UTR-E-siliculosus-1a_F_contig1516:19021..19144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1516 19022..19144 +
1696318777.8494158-UTR-E-siliculosus-1a_F_contig1516:19021..191441696318777.8494158-UTR-E-siliculosus-1a_F_contig1516:19021..19144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1516 19022..19144 +
1622928027.1135402-UTR-E-siliculosus-1a_F_contig1516:20001..200151622928027.1135402-UTR-E-siliculosus-1a_F_contig1516:20001..20015Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1516 20002..20015 +
1696318777.858319-UTR-E-siliculosus-1a_F_contig1516:20001..200151696318777.858319-UTR-E-siliculosus-1a_F_contig1516:20001..20015Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1516 20002..20015 +
1622928027.2047138-UTR-E-siliculosus-1a_F_contig1516:21682..227391622928027.2047138-UTR-E-siliculosus-1a_F_contig1516:21682..22739Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1516 21683..22739 +
1696318777.903628-UTR-E-siliculosus-1a_F_contig1516:21682..227391696318777.903628-UTR-E-siliculosus-1a_F_contig1516:21682..22739Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1516 21683..22739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.1302161-CDS-E-siliculosus-1a_F_contig1516:20015..201171622928027.1302161-CDS-E-siliculosus-1a_F_contig1516:20015..20117Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 20016..20117 +
1696318777.8659043-CDS-E-siliculosus-1a_F_contig1516:20015..201171696318777.8659043-CDS-E-siliculosus-1a_F_contig1516:20015..20117Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 20016..20117 +
1622928027.1460881-CDS-E-siliculosus-1a_F_contig1516:20350..205141622928027.1460881-CDS-E-siliculosus-1a_F_contig1516:20350..20514Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 20351..20514 +
1696318777.873261-CDS-E-siliculosus-1a_F_contig1516:20350..205141696318777.873261-CDS-E-siliculosus-1a_F_contig1516:20350..20514Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 20351..20514 +
1622928027.1623905-CDS-E-siliculosus-1a_F_contig1516:20709..208201622928027.1623905-CDS-E-siliculosus-1a_F_contig1516:20709..20820Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 20710..20820 +
1696318777.8808293-CDS-E-siliculosus-1a_F_contig1516:20709..208201696318777.8808293-CDS-E-siliculosus-1a_F_contig1516:20709..20820Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 20710..20820 +
1622928027.1746151-CDS-E-siliculosus-1a_F_contig1516:21196..212651622928027.1746151-CDS-E-siliculosus-1a_F_contig1516:21196..21265Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 21197..21265 +
1696318777.8885672-CDS-E-siliculosus-1a_F_contig1516:21196..212651696318777.8885672-CDS-E-siliculosus-1a_F_contig1516:21196..21265Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 21197..21265 +
1622928027.1895998-CDS-E-siliculosus-1a_F_contig1516:21558..216821622928027.1895998-CDS-E-siliculosus-1a_F_contig1516:21558..21682Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 21559..21682 +
1696318777.8959506-CDS-E-siliculosus-1a_F_contig1516:21558..216821696318777.8959506-CDS-E-siliculosus-1a_F_contig1516:21558..21682Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1516 21559..21682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1516.2993.1

>prot_E-siliculosus-1a_F_contig1516.2993.1 ID=prot_E-siliculosus-1a_F_contig1516.2993.1|Name=mRNA_E-siliculosus-1a_F_contig1516.2993.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=190bp
MNKSLLTMFAGPLLLALAVSSASDGGSCTTYDEDLEVAKLLDGTCEWDTY
MCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGSVYCHGFAWPEGADV
NNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRF
SIDGIGECGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA*
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mRNA from alignment at E-siliculosus-1a_F_contig1516:19022..22739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1516.2993.1 ID=mRNA_E-siliculosus-1a_F_contig1516.2993.1|Name=mRNA_E-siliculosus-1a_F_contig1516.2993.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3718bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1516:19022..22739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCCGCCCCTGGCCTCTCACTCTCGCAATTTCTTCCTCACCTCGCCTCC ACCACACGCGCCCCTTCCTCTCGCATCACATCCTGCCCCACGTCCTCACA ACCTTCAAAGCCAGGAACTTTTGGTGAGTGCCCGTGTACCCCATGTGTCA TTGCCGATCCCGGCTCGCGGGCTGACACGGGCTAGACCCGTGCCATGCTT GCGTTGCTGCTGGCGCACACGTGCGTGGAAGAATGGTCGTTAGTAGTGTG ATGATCCAGCTGTGGTCCACCGGTTCTCGATTACATCACGGGTCCACGAG GATACGTGTTGCCCACGCGCCGAGGGCTCGTAGGACAAGGGTGGGTCGCA TTCCACGGTTTTCTCCAGCGAGCGGTGTGAGTGAATGCTGAAAAGCTCAA CAGACAAGTGATCTACGTATACTGCCGTGCATCTCTCGGTGCTGTTCAGC ATCGATTGCCTCTCTGCAGAGGAGGGTTCTGGTTTGGATGCTTTCGCCGA TGCACCAATATCAATTGCATTTGTAAGTCGTGCCAACGCTAACCGTGTAG TGAAATGCACGAGATGCTGTCAAGGCGCTTGGCGTTCAATTGTCGCCGAA TACAATTCTGCGTTTGAGACTGCAGTTTCCAACGTTTGTTTGTTCCCAAC AGCAGTTTTCAACGATGTCGGATAGTTGAAACGTGGAGACACGAAAAAAA ATCTGGCTCAACGGATACTCGCGTTGATGATATCCTGTTGCCCGATTACT CATTTTCGAGACGTGCAGTCCGCTGTGCGGGGAAACAGAACAGGTTGCCC TTGTTATTTCGTGTACGACAGCAAGATATCAGTTTGCAATGCGAGATGTG TACCATCAGTCGAAGCTGTGAGCGTTACGTCGATGTATTCGGAAGCAAAA ACACCGGTCGATCCATAGCGCTTGCCGCCGAAACATGAAGAGTAACAAGA CACTCGCCTGCCTCTGCCGAACCTCGACAGGACCAAGCTGCAAGATGAAC AAGTCACTCCTCACGATGTTCGCTGGGCCTCTGCTGCTCGCCCTCGCCGT CTCGTCTGCCTCGGACGGAGGGTCCTGCACCACATACGATGAGGATGTGA GAACGCGAACAATGAAACGCGTACCAATAGACCGTGAGAGGACCGCCGTC TGTGCCCGTTGCGATACGAGTACGTGGACCGCTCGAGTACCATGTACTGC ACGTGGTGTTGTACACGCGCCACTCGTCGCTGTCCACGCACGCACGCGTC AGCAGTGTCGAACAACATGATCTAAGACTTGATCGTTTGTGTGTTCGGGT TCCATCTTCTTGTTCTCAACCGTTTTCAGCTAGAAGTGGCGAAACTCCTC GACGGCACGTGCGAATGGGACACCTACATGTGCTGCTATACCAACCACGA CTCAGGAGAGGGGGTGACCGCGAACACCGATGTTTGCAGCGTACCGAGCG AGGGCCTCGAAATGCCCGGTGACTCAGAGGGTTCCGTGTACTGGTGAGTC CGTGTATGTCGTGCGTATAAACGCCTCATTTGATCTAGACTGCTGCAGGT CACAAACAACACGGATGCCTTTGCTCTCTGACTGCTGTAGTACGTCAATA CTGGAACGGGGCAGCAGCCGTAGCATTCAACAAAACTTACCCCCCCCCCC CCCCCCGCCTCCCTCCGTGTTGACGCAATCAATGACAGTCACGGTTTCGC TTGGCCGGAAGGCGCAGACGTCAACAACCACATCCTTCCCCTGTACCATT ATGTGAAGAACATTGGCCGCACCGAAGAAGAAGGGGGTTACTACGGAAAG TGAGTCTCGATTTCTTGGGGACACAGCTGCACGGCTTAATTCTTTATTAC ACTGCAAAGTTGCAATGCTTGCATGGCCGACAACGTAGGCATTTCTGGTA CGAGGTTCCTAGAACGTTGATCACCCCTTTCAATGGTCTAGCGGTGACCA CGTTGCCGCGGCAACCATCGGCCATGGTCGATCGTTCCTCGTCACATCGG CCGTGTTGGTAGATGTGAGTCGTCCTGCTTGATGTACCCACGGCGGACGT GCAATGCTCTTGGTCCCGTCTTTCAATCCTGGCCGTTCACGATACATGTC TACATTCGCCTGACGCTCGATCCATTTCGTCCAACGTGTGTCGTTTCGCT TTGGTCGTCCGTCATGGCATCACAGCGTGGAGGGAGCGCCGGAATGCGGG TGCATCGAGGAAATGCCCCAAGTTTCTTTCGCAGAGTGCTCCAGGTACGC GGTGGCATTTCGACATTCGAATGTTTGTAGCGGCGGTCAACGTAAATCCT GCAGCAGTTTTACGATTTGACTAGTCTTATAGCCAGGTCGATTTTCGTTT GACTGTGGTGTCGCTGTAAAATGGAAAGACCGAACCGTCGTTGTGGAGTT CAATAGAAATGCTTACAAATAGTTTAGTATACGAATTATTGTGGCGGTTG AAGGCATACGCATCCGTTTTTCAATAGCTAGAGGAATATATTGTGTGACT CTCGACGTGACCCTTTCCCTTCTATTCACGTTACCAGGTTCTCTATCGAC GGGATCGGTGAGTGCGGAGAAGGCGGGCTGTACAGCCAATACAACGGCCG TCTGGGCGCGCCCTACGGTGAGATGGAACACAACCTGGTGAGGTCTTGCG ACAACGCCTAACTGCCCGGCGAGGCAGATGGCCGGGAGGGCAAGTTCAGG CGTGTACGAACAACCACCTGCGTAACCGCTACGAGAAGTGTACCCGTGGG GAAGCTCGACAACCTCGGCGGCGACTGCGACAACGCCTATTTAGTCGACC CCGGTCCATGGTGGAGGATGAGGATTATTTTATGGTTGCGGTTGGGAATG CTAGTAGGCAGAATTGAGGACTAGACTCCACTCGTAGATGCGAGCATCGG GACGTGGTTGATGAGCAGGCTGGTACCGTTAGTTTTGGGTCTTGCTAGTT GTGCGTGTGGAGTGGGGCGGGTCCATTGGAAGTCTTAGCAGCGAAAAAAC ACTTCCACGGTATAGTGCAGATACAAGGAATACCGTGCTCTCCCGTGGGG TTTCCTGGACATCCATGGTCTTGCTTCTTTTTGGAGCTTGGTGAACTTGC GTGGATCGGGGTTTCATCCGTATGGGGACCCAGGCAAGAGACCCGCATGC AGGAATGGGTTGAGTCGAAATTGGTCTCTTGCTCGGCGGTAGGATCTGCT TAATGGAGTTCGTTCCCGCAGTATTTTCCAAGGTAGGTAACACATGTAAA TTATGTCCTTTTTCGGGCATTTAGTTGCTCTCGTTGCGCGCTGATCGTGT TGGATTTGTTCGTTTGTTCGTTGTCCATTTTTGAGCGAAGTTGTGGTCGT GTTTTTATTTGTGTGGTCGGGAACTGCTGTTGTCAATTTTGGTCAAACAT TAAGAAGCTGTTCGTAACATCCGCTTTGCACAAATCCAATGCGTGCAGGA TCGCAACAATTCTTCTTGTTGCAGCCCCGAGGTGTGGGACTTCTGGAGGT CAAATGTCTATAGGACGTTTCCTGGGTTTACAAGGCCGTGCAATCATTTG GATGAGCTTGCACGTTCGTTCGATGTTCTGCGATGTCGGTTGCTTTGTGT CGATATAATTGTTGAGTGTTGTCGGTTGTGACGGGTTGGCGCGATAGTCT TCCTTGTTGGAAAATAGAGGTTGTTTTGATGCTGCACACGCAAAACTGAA AATAAACAAACGAAACCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1516:19022..22739+

>mRNA_E-siliculosus-1a_F_contig1516.2993.1 ID=mRNA_E-siliculosus-1a_F_contig1516.2993.1|Name=mRNA_E-siliculosus-1a_F_contig1516.2993.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1516:19022..22739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACAAGTCACTCCTCACGATGTTCGCTGGGCCTCTGCTGCTCGCCCT
CGCCGTCTCGTCTGCCTCGGACGGAGGGTCCTGCACCACATACGATGAGG
ATATGAACAAGTCACTCCTCACGATGTTCGCTGGGCCTCTGCTGCTCGCC
CTCGCCGTCTCGTCTGCCTCGGACGGAGGGTCCTGCACCACATACGATGA
GGATCTAGAAGTGGCGAAACTCCTCGACGGCACGTGCGAATGGGACACCT
ACATGTGCTGCTATACCAACCACGACTCAGGAGAGGGGGTGACCGCGAAC
ACCGATGTTTGCAGCGTACCGAGCGAGGGCCTCGAAATGCCCGGTGACTC
AGAGGGTTCCGTGTACTGCTAGAAGTGGCGAAACTCCTCGACGGCACGTG
CGAATGGGACACCTACATGTGCTGCTATACCAACCACGACTCAGGAGAGG
GGGTGACCGCGAACACCGATGTTTGCAGCGTACCGAGCGAGGGCCTCGAA
ATGCCCGGTGACTCAGAGGGTTCCGTGTACTGTCACGGTTTCGCTTGGCC
GGAAGGCGCAGACGTCAACAACCACATCCTTCCCCTGTACCATTATGTGA
AGAACATTGGCCGCACCGAAGAAGAAGGGGGTTACTACGGAAATCACGGT
TTCGCTTGGCCGGAAGGCGCAGACGTCAACAACCACATCCTTCCCCTGTA
CCATTATGTGAAGAACATTGGCCGCACCGAAGAAGAAGGGGGTTACTACG
GAAACGTGGAGGGAGCGCCGGAATGCGGGTGCATCGAGGAAATGCCCCAA
GTTTCTTTCGCAGAGTGCTCCAGCGTGGAGGGAGCGCCGGAATGCGGGTG
CATCGAGGAAATGCCCCAAGTTTCTTTCGCAGAGTGCTCCAGGTTCTCTA
TCGACGGGATCGGTGAGTGCGGAGAAGGCGGGCTGTACAGCCAATACAAC
GGCCGTCTGGGCGCGCCCTACGGTGAGATGGAACACAACCTGGTGAGGTC
TTGCGACAACGCCTAAGTTCTCTATCGACGGGATCGGTGAGTGCGGAGAA
GGCGGGCTGTACAGCCAATACAACGGCCGTCTGGGCGCGCCCTACGGTGA
GATGGAACACAACCTGGTGAGGTCTTGCGACAACGCCTAA
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