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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig151.2972.1 vs. uniprot
Match: D7FLA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLA3_ECTSI) HSP 1 Score: 358 bits (918), Expect = 1.470e-118 Identity = 184/188 (97.87%), Postives = 184/188 (97.87%), Query Frame = 3
Query: 75 MVFWVPVFVAAAVSVSVGVMFPRAPTWQIVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVADGGVIVSRALAVMDVKVMGGDILIEADCVQHMQADVFPIKINEIDCKYYYKNVRVPVLPP 638
MV WVPVFVAAAVSV VGVMFPRAPTWQIVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVADGGVIVSRA A MDVKVMGGDILIEADCVQHMQADVFPIKINEIDCKYYYKNVRVPVLPP
Sbjct: 1 MVLWVPVFVAAAVSVCVGVMFPRAPTWQIVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVADGGVIVSRASAFMDVKVMGGDILIEADCVQHMQADVFPIKINEIDCKYYYKNVRVPVLPP 188
BLAST of mRNA_E-siliculosus-1a_F_contig151.2972.1 vs. uniprot
Match: A0A836CLA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA5_9STRA) HSP 1 Score: 125 bits (315), Expect = 9.090e-30 Identity = 78/190 (41.05%), Postives = 115/190 (60.53%), Query Frame = 3
Query: 75 MVFWVPVFVAAAVSVSVGVMFPRAPTWQIVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVA-DGGVIVSRALAVMDVKVMGGDIL--IEADCVQHMQADVFPIKINEIDCKYYYKNVRVPVLP 635
M+ +PV V V+V + FPRAPTWQI KY +S N + ++++ LE++N N + A + I + + H D G E PF + AG+ A LPARGS M + +L +MA +A+D A +GG +V+RA + MDV V+GG +EA+CVQH++AD FP+++ IDC+YY RVP+LP
Sbjct: 1 MLVVLPVIVTY-VAVLIANFFPRAPTWQIRGQKYTSVSFNY-DFTMAAEMELELELYNDNLLSAHVNAIELEVLHRDAWGVERPFARIHVAGDFA--LPARGSVRRAGTMVMDALAPAMAGALARDAAANGGTLVTRAHSTMDVSVLGGAARARLEAECVQHLRADAFPMEVTYIDCRYYMGRHRVPMLP 186
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 567 |
| Model size | 1764 |
| Exons | 5 |
| Ec32 ortholog | Ec-15_004890.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal peptide |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig151.2972.1 >prot_E-siliculosus-1a_F_contig151.2972.1 ID=prot_E-siliculosus-1a_F_contig151.2972.1|Name=mRNA_E-siliculosus-1a_F_contig151.2972.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=189bp
MVFWVPVFVAAAVSVSVGVMFPRAPTWQIVDMKYRGLSMNIASIGVDMKI
DMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPA
RGSAVVQAQMEVVSLPTSMAMGIAKDVADGGVIVSRALAVMDVKVMGGDI
LIEADCVQHMQADVFPIKINEIDCKYYYKNVRVPVLPP* back to topmRNA from alignment at E-siliculosus-1a_F_contig151:68998..76292- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig151.2972.1 ID=mRNA_E-siliculosus-1a_F_contig151.2972.1|Name=mRNA_E-siliculosus-1a_F_contig151.2972.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7295bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig151:68998..76292- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCTCTTGCCCTGCATTGCCTGGGCGCTGGGCAGGCATCAACCAAGTAGG
GCTTGCTTGGGTGAGGTGGACGGTATGGTGTTCTGGGTGCCGGTTTTCGT
GGCGGCGGCAGTGTCTGTGTCTGTCGGCGTCATGTTCCCTCGAGCACCAA
CATGGCAGGTATGCATATGTATGTGATGCATTGTTACAGCGTAGGAGTCG
TACAGCAGTAGTCTAGACAGCAATAGGCTGCAGGTGCTGCACCATCTTGC
AGCGTACACGTATGGTTACGATATCTACATACCTATACATTAGCCTTCGA
CAGCCAATGCAGCTATTGGTAGCCAAGGACTTTGAATGATGTTATTTGTT
ATTTGTACATGGTCGACCAGCACTGCTGAACGGTTATACAGAGCTATGCA
TACAATATAGGGAGATGTTGATGCTTCGCGTATTGCCACGTGGGCGTCGA
CAAACGTGCACACGGGACCTCTACCGCCCACCCTGACTTTCGAACCAGCT
CGCCGGTGACGAAACTGCCACCCATTACCAGCATGCACACCTGTGTAGTG
TGTAGTCTGTCCAGTATACCGTGTTGTAGGTTGCATAAGATACCACACCC
CTGGACCGATTTTCGAAGGTTGAGCAGCAACACAGCAGTAGTACATGGTC
ACGGGGCCGATAGTCATGGAATTAGAAACTTGGAAACCTGTTGAGAGCTT
ATCGAAAACGCATAATCGATTGTGGTATCCTCTTGGTCATGGAATACTCG
AGCTATTCAAATCGGTGCAGGGGGGTGTGGTATCTTACATCATGCAACCT
ACGCCAGTCTGTGGGACAAATTTCAAATCGGGAGCAAGCGCTCGGCAACA
AGTAGATACATGCTGAAGCTCTCCCGGATGATGCATTGCCGAGAAGCGAC
CAACTTCTCTCGCATATTGATGGTCTCGTGCTGGGTGCAGACGAAACTGC
TGTAGTCAATGCACGCTTTGGTTGCATCAGCAGAGCGAAAGAGCTCATTC
ACTGCTGCTGTACATGTACTGTATGTACTGGCCTACAATACGTAGATGGT
ATGATACAACAATGCGACTACATACAATACAACACAGATAGCCCCGCACT
TACGAGGTTGGAACTTCATGCTCAGGATTATGACACACAAGTCTTGATCT
GTGAGCCCGTCTAAAAACCCGCACTATACTGGTACTTGCCACGGGTGACG
ACTCAATACCTTGCAGTAGTCTATCTGCGATGCTGTGCAAGGTGCGAGAC
ACTCTGCGTTCCAGGCAGCAACGCAGCAACCTAGCACGCGCAGTTCAGGT
ACTTGCTTCGCGGAATAGTCTAATATTCGAACGGATCTTCCACGACGTTG
CATCCGCTCCCCCCCGTTGGAAGTTCGTTGAAAATTGGTATGCATACTCC
ACATAAACCAACAGCGGAGGAACATGCTCGCCTTGCAACACAACTGCAGT
ACCTCCGAGCTGGGACCTCGAACGATCGGCACCTAACAGCAGCACTGACA
CAGACACAAATGAACATAGGTATTGCATAGCTGACACAAATGCACTTGTA
GCGCTGCTGCTTTGCTGTAATGGCAATGACTCCCATCTCTCTTACTTATT
TCTATTCGGCAGTGCATGCATGCGGGAGAAACGCCCTGGATGACGCTGGG
CACCTAAAAAGGCTCTCTTATTTTTTGCCCCTTGGACAGCAGCAGTTTTG
TTTCCGGGCGACCCCCCTCCTGACATAACAAAGGTATCCGGCACGAGCTG
TGTCCATGTTCCGTCTTGTGTGGAGATTAACACCGACGAGGATGCTGTAG
TACGCTCAGAAACGCGAGCGTTTGGCACAGCCTGCCGAGTCTGTCTCTAC
TGGGATCATCAGAGTCCGTTCGTGTAGATTGTTTGCCCCAGGCGCAAAGG
TTTCGTTTTCCGATGATCCCTCTCCCCACACGCCAAAGCAACGGCAGTGG
CGATGATATCCGCCACGAGCTGTGTTTGTGGCTCCCTTCCCTCGCCAATG
CGGTGTTGCCCCCCCAGCAGTGTTGTGTGTTTAGCTTACTGAGTGCTTCC
TCTGTGTCCCCCGGGTCGGAAACCGAGCAACTCTGCATAATGATAACTAC
TGTGTGTGTAGGAGATCTCCGTTTTTGTGTTCCTTTACCTCGCGTCGAAC
TCCCGGGGACGTTTCGGTGATTTTGGTAACAAATGCGTGTCAAGCACGGT
CATCTGTTGTCAGAGCGCGATGACACCGGTGTGACGGGGAATGCCCTAAT
TAGCTTAGATTCCTCCTCACAACCCCCAGCACATCGTAAATCGGTGCTCT
ATAGACCTCGTTCTCGTCAACTTGAGGGATAATATTTTGGCATACGATTC
CCCGGGGGGTTTTGCGGAAGGGTCGCTCTACAGCGCCATGGTTGAAAGAG
CCCGATATTTATAACCTTTTTTCCCCTCCTGGGGTTGAAGGGAAAACAGG
TCGCGCTTCGCGCTCCGTGGCTCATTATTACACACCACTCTATATTCAAC
CTAAATACTTGTAGCGACCGACCAATTGTAGCCCACAAGAGCAAATGTGA
ACGTAACAACCCCATTACTCCTCGGCCAACACTAAATAGATAGAGGTGCG
CGCTGTCTGTATAACAACATTCCAATGTCTGTTTAACAACATTCCAACAG
CAGTATTAGCATGGTAGCTACTCTAACAGTAGTGTTGTCGGCATTTCGCG
TACCCGGTACCCGGGCACGCTAACGTGTCCAGCGCCAAACATTGGCGGCA
TTGAACCAGACACATCGACACATCTATCTGCTGCTTGTGGCGTACCAGTA
GTTTGTACTCGTACACCAGTGAGAGCCACGGGCAGGTTCAAGCCACAAGC
TGCACCCTCACCGCTTAGTGCACCACCCTACAACACACACACGCTGTGCT
GGACAAAGTCTGCTTGCTGTTGAGGCGGCGGCTTCGGCAAGGGTGGCCTG
TAATATCGCACCCCTGACATACATTCCTGCATGTTGGCTGCCCTTTCGAG
CTACGACACCTCGGTACTGTTTCGTAGGCGGCCATCCGTATGTTTCTCGC
ACGATCCCTCAAGATTTGAGGAAGAGCTCAACACAACCGCGAATGCCTTT
TGTATCGAACTCCTTCCTTTAATAGCGTGCACGTACATGTCTCTCTCGGC
GCGTCGTGATGTGTGTCTAGTGCCGCTATTTTGAATCTGCTGTGTCCTCG
GGTATGTATAGGACCGCGCTCATGATGTGCAGAAATGAACATGAGGGCGG
CGTTTGTTAGGTAGTTGTATACATACATACCCCCTTGGGCATTATCTGAA
CTTGTGACAAGGTGAGCCGATCACATTCGACAGCTGCGGTCTATCTTGCG
TGTGCGCACTGTAGCTACTGTACATGCAAATGCCTGGTGGTTGTTGAAAC
CCCAACTGAATCTATTTTATAGCAGTAATTTCTCAACTTCCGCGTGCGTA
CTTCAATGCATCACCAGCACAACATCCCTTTCTTTGAGCTGCCCGGTTTT
CCGCCTGTACTTCTGCCTAGTTACAGTGGCCTGAGGAACAGCGAAAAGGA
TCACCATGCATAATTTCTCAACCACAGCCCGCTACTCAGCATGTTGGGTC
CCTAACCGCCTCCGTGTTCCTTCAACCTGTGGCGGTCACCGTCATCGATC
GCAGCCATCCCGGTTACTCCTATGTGCGTCAACATGGCCTGATTCGTTGC
TTGTGCGCAATTGCCATGCGTCGGTCGTGTCGTGTCGCAGATCGTGGACA
TGAAGTACAGAGGCCTGTCCATGAATATTGCGAGCATTGGGGTTGACATG
AAGATCGACATGGGCCTAGAAGTTTTTGTGAGTCACCCTGTTGTGGCAAC
AGTCGAAGGAGCGAGAAATCTGTTCTATTGAGTTCTTCTACATCGTCTTT
TCAAGCCTGTACCGTTTGGCTCGCAGAAAGCATGAACTATTCCGCAGGGG
TACAGTGTGACGAATCCGTGGTATGACATTCCATATGTACAACAGCCATT
AGCCGTTACAGGCCGTTCGTCCGTCCGGGTGTATGCCATTGGTGTCGATT
TATTTCATAGCGTCACGAAGTTGGCGTTCGGAATTATACATGTATGAGCT
GCAACAATGTTGTGTTTCTAGGTGAAGTCGCACTCCCAAAATGTAGCACA
CCTCGACTGGCATCAGCGAACCGTGAACGTGATACCCAACTTGCCGAACG
ACAACTGCTGTGCCGGCCACAACACTCCCCTGCCTTCCGTGTTCTTTGCA
GAACCCCAACTACGTCCCTGCAACGCTGAAAGGCATCGTGATGACCATGT
TCCACGAAGACCTTGGAGGGGAGGAGGCGCCATTCGGGGTGGTAACCTTC
GCCGGCGAAAATGCGGCGAGACTACCCGCGCGGGGCTCCGCGGTAGTGCA
GGCACAGGTACTATTATTACGTATTCACCGCAGCTGTGACCCTCCTGGTC
TTGAACGGTACTCCCATGAGCGCGGTTTCCGACTCGTTTTTTTGTTTTCA
CGCACGTGAACCGCAGCCCGAGCCTTCTTCGCTATGATCATCGATGGCCT
CCGCCTGTTCTGTTTCGCGTGCTGTTCTGTGCCTTCTTGTCTACTACTTT
TGAATCTCGGGACTGTATTAAGATGGAATCAGAGGGCACCGAAAAAGAGT
ACGTTGTCAAGAAGCATTGTTGCAAAGCGCCACCCAATACCCTGCACTGT
CAAGCCGGTGCATACGGTAGACTTTGTCAATCCCCTTACCCCCTGGTATC
TCTCTACCTAGTCCAGCTGCTGGTGATGTTGACGTTGGTGTAATTCCGTA
ACGTCGAAGACACACGGCCACTATTTTTGTCGTATTTTCGTGCGGTTGGA
GAGTACGGACTGCTCCACCACATAACAAGCCAGGAGTTCACAGATCCAGG
ATTAACAAACTATAGCAATGTTGGCTACAAGAACAGGTGCTCAGTTCACC
ATCCTTCACCGCTGTAGTATATTTCCAAGTACTTGTAGCTGTTGGGCTAC
CCGTCAGAGAAAATAACCGCTGTATTGTCAAGTAGCTGGTTGGGTTACCC
GGCGGAGAGAACAAGAAGCAAGCCTTTTCGCGAAAGAAGAGGTTCTTGAA
TGGTGGCGAGTGCTGCATGACGATCCACGCACTGGTATGTACAATCGGTA
GCCCTTCTCGATCCCCCTCTCTCGTCCTCATCTTACGACCGAACCTCGTC
TTGGTTCTTTTTTTTCTGTTCTGTTTTGTTTTGTCTGTCTTGTAGATGGA
AGTCGTGTCGCTACCGACGAGCATGGCGATGGGCATTGCGAAGGATGTTG
CTGACGGAGGCGTCATCGTCAGCCGGGCGTTGGCCGTCATGGACGTGAAG
GTTATGGGAGGGTGAGAGCAAACGAGAGAGGTTCAGATACAGTACCGGTA
CTGGACCCTGTACCGTGCCGGTGGAGTAGTGCAGGTGCCCGGTTAGTGTC
GGTACTTCGGCTCGCACACTGTACTTGTACACTCATATTCCAAGCTGTTC
TGGTACTTTGAATAGTGCCGGCATCCGGTATAGTCTTGTGCCCGTAATAT
CTCGGGACATATACTGCACTGAACAGGGACCTCTACTGTAGTTGCACACA
CCTCTTTGTGAGGTAGATTCGAGGGGTGATCATTTGTAGTTGGCGACTTG
ACACGTTGTTCGTGTCGGGTTGGGACCGAAGTCTTCGTGCTTTTCTTCTT
GTTATCGGAGCTTGAGTTTCTTTCTTCCTTCGGGTGTTAATTTCCAACGA
TTAGAACCAGATAAGCCTGCTTCCGCTGTCATTGGACTAGCGCCTATCAG
GGCAATCTGGTAGGTCGTGTTTTCATGTTATTTTGGTTCTCTTTGAAGGG
AATTGAGCTTGGCAGCGGAAACGCTCTCAATTGGCCGGCTTTCAGCAACC
GAGTTCCGAGAAGGAATTGAGGAGAGACGATTATGGCACCTCTTTGAAAG
AACGTGCGACAACTGAATTGTGGCCTTCGTCGTTCGCCATTGTTCCGCTT
CTGTTTTCAATCGTTTACAATCGAATCGCAACGACTCTGCTGCGACAGGG
ATATCTTGATCGAGGCGGACTGCGTGCAGCACATGCAGGCAGACGTGTTT
CCCATCAAGATCAACGAGATAGACTGCAAGTACTACTACAAGAACGTTCG
CGTGCCGGTGCTGCCTCCATAGCGGGGCATCGCCATGTCATCATGTCCGG
GAGGAGCAACGAGAGTACTGGCAAGGTCCTCACTTTTTGAGAAGGAGATT
CGGGGTTCGGTATCAAGATATCAAGAGCTGGCTTCCCTTCGCCTCCGGGC
AGTTGGATCGTTGTATCCCATCCCATCCCATGCAGGCTTCGGAAAACTCT
CCTGGAGGTCTTTCCAGAATTTCGCTCACTGCATTGGCGGCCCTCGAGTG
GTTGAAAAATCACGCACGGAAGGTAGCGTCCAAATGAAGCCGGAGGGGGT
GAGTTAGTTAGTTTCGCCATATCAGTGAGTGTACAGAACAGCTGGCGATG
AGAGACGATTTTTTGATGTGCTACAAGGAGTTCGTTGACGCTGACGTTTC
TTTATGGTTCTTATGTCTGCAGGGCGGGCATTCGAAGGGGTCGGGGAAAA
GGGTGGTCATTTTCATCATTCGGTGCCATGGACCCTTGTATTCTCCTGAG
CCAGGGTGGGCCGTCCACCCCTGGTCGACCTTGTGCAGGGAAACAGGTTT
GCACCTACAGTAGCCATGTAGTACCGTGACGTTGTTGTGTTCGGGGAGTT
GCGTATAGGTAGTCCGCTGAATTGCGAGAATCGTTTTGGGGAAGATGTTA
GCACACTGCTGTTTGGTTTCTTAGTATGGTGTTGGTGTGGGGGGGCGAGA
AACATTTATTCGTTCTTCGTGAGTTGTGATGTGAATTGCCTTGGCATCGA
TACGTTTGTGTTTTCTCGAGGTTGTTGCTGACGTAGCTGCTTTTGCCGGG
CGCATGTCGCCAGCGTGTTATCTGTGGTTGGGCAGACGGAAGGGGAAGCG
TGTAGTCTATCTACAGTATGTGCCCGGAGGTGCTTTGCAGCGCACCGATT
AGATTGTTGTGCTTGGATGTATTCCTACCCTCGTCAGGTCAGGTGGGTGC
GGATGGATGGGAAAGCAAAATTTTGTAGCTCTCGTCCACCCTCCATTGTA
CCACCTCCTCAATCCGAAAGATCAGAATGTTTGTTTCTAACGACGGTCTT
ACGACACTTACGATGAAGGGGTGTAGTAATGATGCTCCGCGAGGAAGTGT
ATGTTTATTGTTCGCGCCACCCTCTCCCAGACTCGATAATAATAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig151:68998..76292- >mRNA_E-siliculosus-1a_F_contig151.2972.1 ID=mRNA_E-siliculosus-1a_F_contig151.2972.1|Name=mRNA_E-siliculosus-1a_F_contig151.2972.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig151:68998..76292- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGTTCTGGGTGCCGGTTTTCGTGGCGGCGGCAGTGTCTGTGTCTGT
CGGCGTCATGTTCCCTCGAGCACCAACATGGCAGATGGTGTTCTGGGTGC
CGGTTTTCGTGGCGGCGGCAGTGTCTGTGTCTGTCGGCGTCATGTTCCCT
CGAGCACCAACATGGCAGATCGTGGACATGAAGTACAGAGGCCTGTCCAT
GAATATTGCGAGCATTGGGGTTGACATGAAGATCGACATGGGCCTAGAAG
TTTTTATCGTGGACATGAAGTACAGAGGCCTGTCCATGAATATTGCGAGC
ATTGGGGTTGACATGAAGATCGACATGGGCCTAGAAGTTTTTAACCCCAA
CTACGTCCCTGCAACGCTGAAAGGCATCGTGATGACCATGTTCCACGAAG
ACCTTGGAGGGGAGGAGGCGCCATTCGGGGTGGTAACCTTCGCCGGCGAA
AATGCGGCGAGACTACCCGCGCGGGGCTCCGCGGTAGTGCAGGCACAGAA
CCCCAACTACGTCCCTGCAACGCTGAAAGGCATCGTGATGACCATGTTCC
ACGAAGACCTTGGAGGGGAGGAGGCGCCATTCGGGGTGGTAACCTTCGCC
GGCGAAAATGCGGCGAGACTACCCGCGCGGGGCTCCGCGGTAGTGCAGGC
ACAGATGGAAGTCGTGTCGCTACCGACGAGCATGGCGATGGGCATTGCGA
AGGATGTTGCTGACGGAGGCGTCATCGTCAGCCGGGCGTTGGCCGTCATG
GACGTGAAGGTTATGGGAGGATGGAAGTCGTGTCGCTACCGACGAGCATG
GCGATGGGCATTGCGAAGGATGTTGCTGACGGAGGCGTCATCGTCAGCCG
GGCGTTGGCCGTCATGGACGTGAAGGTTATGGGAGGGGATATCTTGATCG
AGGCGGACTGCGTGCAGCACATGCAGGCAGACGTGTTTCCCATCAAGATC
AACGAGATAGACTGCAAGTACTACTACAAGAACGTTCGCGTGCCGGTGCT
GCCTCCATAGGGATATCTTGATCGAGGCGGACTGCGTGCAGCACATGCAG
GCAGACGTGTTTCCCATCAAGATCAACGAGATAGACTGCAAGTACTACTA
CAAGAACGTTCGCGTGCCGGTGCTGCCTCCATAG back to top
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