mRNA_E-siliculosus-1a_F_contig15096.2964.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15096.2964.1
Unique NamemRNA_E-siliculosus-1a_F_contig15096.2964.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 5.900e-42
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 MPHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV 261
            +PHVLD LEQV+QHL  VASTGTS RLVVLDDVWEREVVDAF PLGFKVLLTTRDRSVVG+PAGRLELGDMTEEEA+ELLRKTSGTV
Sbjct:  363 VPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSGTV 449
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 9.680e-41
Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 MPHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV 261
            +P VLDSLEQV+QHL  V STGTS+RLVVLDDVWEREVVDAF PLGFKVLLTTRDRSVVGVPAGRLELGD+TEEEA+ELLRKTSG V
Sbjct:  346 VPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGAV 432
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.410e-39
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MPHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV 261
            +PHVLD LEQVKQHL  VASTGT  RLVVLDDVWEREVVDAF PLGFKVLLTTRDRSVV VPAGRLE+GDMTEEEA+ELLRK+SG V
Sbjct:  309 VPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGAV 395
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.580e-38
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MPHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV 261
            +PHVLDSLEQV++HLG VASTGTS RLVVLDDVWEREVVDA  PLGFKVL+TTRDRSVVGVP   LELGDMTEEEA+ELL KTSGTV
Sbjct:  240 VPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELLLKTSGTV 326
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 4.820e-38
Identity = 73/87 (83.91%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:    1 MPHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV 261
            +PH LDSLEQV+QHL  VAST  S RLVVLDDVWEREVVDAF PLGFK+LLTTRDRS+V  PAGRLELGDMTEEEA+ELLRKTSGTV
Sbjct:  148 VPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGDMTEEEALELLRKTSGTV 234
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 9.540e-36
Identity = 74/88 (84.09%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 MPHVLDSLEQVKQHLGTV-ASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV 261
            +P VLDSLEQV+QHL  V ASTGTS RLVVLDDVWEREVVDA  PLGFKVLLTTRD SVV VPA RL+LGDMTEEEA+ELLRKTSGTV
Sbjct:  320 VPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRLDLGDMTEEEALELLRKTSGTV 407
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.200e-35
Identity = 71/87 (81.61%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 MPHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV 261
            +PHVL+SLEQVKQHL TVAS GTS RLVVLDDVWEREVVDA   LG KVL+TTRDRSVVGV  G LELGDMTEEEA+ELL KTS TV
Sbjct:  104 VPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELLLKTSRTV 190
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.630e-32
Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 MPHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV 261
            +PHV DSLEQV QHL  V S G+S RLVVLDDVWEREVV AF  +G KVL+TTRDRS+VGVP G LELGDM E+EA+ELL KTSGTV
Sbjct:  340 VPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLLELGDMAEDEALELLWKTSGTV 426
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.770e-29
Identity = 63/86 (73.26%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    4 PHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV 261
            P  LDSLE V QHL TV STGTS RLVVLDDV EREVV+A  PLG K+++TTRDRSVVGVP G LE+GDMTEEEA+ELL   SG V
Sbjct:   63 PGDLDSLEHVMQHLTTVVSTGTSPRLVVLDDVLEREVVEALLPLGLKLVVTTRDRSVVGVPGGCLEVGDMTEEEALELLMLASGAV 148
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BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Match: A0A6H5KQU6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.510e-28
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 MPHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVLLTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTS 252
            +P+VLD LEQV QH+  VASTGTS RLVVLDDVWEREVVDA   L  KVL+TTRD SVVGVP  RLE  DM E+EA+ELL KTS
Sbjct:  190 VPYVLDGLEQVGQHVAAVASTGTSPRLVVLDDVWEREVVDALLRLKLKVLVTTRDHSVVGVPGTRLEPEDMAEDEAMELLLKTS 273
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15096.2964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G722_ECTSI5.900e-4289.66NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI9.680e-4187.36NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE1.410e-3986.21NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KU94_9PHAE2.580e-3885.06NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FUD7_ECTSI4.820e-3883.91NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI9.540e-3684.09NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5LJA6_9PHAE1.200e-3581.61NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LPV9_ECTSI1.630e-3274.71NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5JLW6_9PHAE2.770e-2973.26NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KQU6_9PHAE4.510e-2872.62NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15096contigE-siliculosus-1a_F_contig15096:634..894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size261
Model size263
Exons1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
KEGG Pathwayko05132,map05132
KEGG koko:K10407
Seed eggNOG ortholog2880.D7G722
Seed ortholog evalue1.4e-35
Seed ortholog score155.2
Taxonomic scopeEukaryota
BRITEko00000,ko00001,ko03019,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.4629176-CDS-E-siliculosus-1a_F_contig15096:633..8941622928020.4629176-CDS-E-siliculosus-1a_F_contig15096:633..894Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15096 634..894 +
1696318775.080451-CDS-E-siliculosus-1a_F_contig15096:633..8941696318775.080451-CDS-E-siliculosus-1a_F_contig15096:633..894Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15096 634..894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15096.2964.1prot_E-siliculosus-1a_F_contig15096.2964.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15096 634..894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15096.2964.1

>prot_E-siliculosus-1a_F_contig15096.2964.1 ID=prot_E-siliculosus-1a_F_contig15096.2964.1|Name=mRNA_E-siliculosus-1a_F_contig15096.2964.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=87bp
MPHVLDSLEQVKQHLGTVASTGTSRRLVVLDDVWEREVVDAFAPLGFKVL
LTTRDRSVVGVPAGRLELGDMTEEEAVELLRKTSGTV
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mRNA from alignment at E-siliculosus-1a_F_contig15096:634..894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15096.2964.1 ID=mRNA_E-siliculosus-1a_F_contig15096.2964.1|Name=mRNA_E-siliculosus-1a_F_contig15096.2964.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=261bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15096:634..894+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTCACGTCCTGGACAGCCTGGAGCAGGTTAAGCAGCACTTGGGCAC
AGTGGCATCCACGGGCACCTCCCGACGCCTGGTGGTGCTGGATGACGTGT
GGGAGCGCGAGGTTGTTGACGCGTTTGCTCCTCTGGGGTTTAAGGTGCTG
CTGACCACGCGTGACCGGTCAGTTGTTGGTGTGCCGGCCGGACGCTTGGA
GCTGGGAGACATGACGGAGGAAGAGGCGGTGGAGCTGCTGCGGAAGACAA
GCGGGACTGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15096:634..894+

>mRNA_E-siliculosus-1a_F_contig15096.2964.1 ID=mRNA_E-siliculosus-1a_F_contig15096.2964.1|Name=mRNA_E-siliculosus-1a_F_contig15096.2964.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15096:634..894+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTCACGTCCTGGACAGCCTGGAGCAGGTTAAGCAGCACTTGGGCAC
AGTGGCATCCACGGGCACCTCCCGACGCCTGGTGGTGCTGGATGACGTGT
GGGAGCGCGAGGTTGTTGACGCGTTTGCTCCTCTGGGGTTTAAGGTGCTG
CTGACCACGCGTGACCGGTCAGTTGTTGGTGTGCCGGCCGGACGCTTGGA
GCTGGGAGACATGACGGAGGAAGAGGCGGTGGAGCTGCTGCGGAAGACAA
GCGGGACTGTGATGCCTCACGTCCTGGACAGCCTGGAGCAGGTTAAGCAG
CACTTGGGCACAGTGGCATCCACGGGCACCTCCCGACGCCTGGTGGTGCT
GGATGACGTGTGGGAGCGCGAGGTTGTTGACGCGTTTGCTCCTCTGGGGT
TTAAGGTGCTGCTGACCACGCGTGACCGGTCAGTTGTTGGTGTGCCGGCC
GGACGCTTGGAGCTGGGAGACATGACGGAGGAAGAGGCGGTGGAGCTGCT
GCGGAAGACAAGCGGGACTGTG
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