mRNA_E-siliculosus-1a_F_contig15079.2956.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15079.2956.1
Unique NamemRNA_E-siliculosus-1a_F_contig15079.2956.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.040e-10
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIAV 129
            Y KV+ WTR  D+F  KFV VP+   LHWSLACLCNLD + V
Sbjct:  726 YSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLDKLEV 767
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.950e-10
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIAV 129
            Y KV+ WTR  D+F  KFV VP+   +HWSLACLCNLD + V
Sbjct:  424 YSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLDKLEV 465
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: A0A6G0XW91_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XW91_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.330e-9
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    4 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIA 126
            + KVKRWTR  +IF + F+F+PIN   HWSLA +CN  A+A
Sbjct:  377 FDKVKRWTRSVNIFELDFLFIPINESCHWSLAVICNPGALA 417
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: A0A0K9QML7_SPIOL (ULP_PROTEASE domain-containing protein n=5 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QML7_SPIOL)

HSP 1 Score: 57.4 bits (137), Expect = 2.130e-8
Identity = 19/45 (42.22%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 GYRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIAVCN 135
            GY++V++WTR  ++F   ++F+P+NY LHWSL  +C+   +A  N
Sbjct:  434 GYQRVRKWTRKVNLFEKDYIFIPVNYNLHWSLIVICHPGEVANIN 478
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: A0A803MEJ1_CHEQI (ULP_PROTEASE domain-containing protein n=8 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MEJ1_CHEQI)

HSP 1 Score: 57.4 bits (137), Expect = 2.130e-8
Identity = 19/42 (45.24%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 GYRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIA 126
            GY++V++WTR  +IF   ++F+P+NY LHWSL  +C+   +A
Sbjct:  201 GYQRVRKWTRKVNIFEKDYIFIPVNYNLHWSLIVVCHPGEVA 242
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: A0A443NFP0_9MAGN (Peptidase C48 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NFP0_9MAGN)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-8
Identity = 19/41 (46.34%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    4 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIA 126
            +++V++WTR  +IF   ++F+P+NY LHWSL  +C+  AIA
Sbjct:  432 FQRVRKWTRKVNIFEKDYIFIPVNYNLHWSLVVICHPGAIA 472
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: UPI0002C32EDC (probable ubiquitin-like-specific protease 2B isoform X1 n=2 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C32EDC)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 19/43 (44.19%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    4 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIAVC 132
            +++V +WTR  ++F   ++F+PINYRLHWSL  +C+   +A C
Sbjct:  250 FQRVHKWTRKVNLFEKDYIFIPINYRLHWSLIVICHPGQVANC 292
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: A0A6J0KSD7_RAPSA (probable ubiquitin-like-specific protease 2B n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KSD7_RAPSA)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-8
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIAVC 132
            + +V++WTR  D+F   F+FVP+N+ LHWSL  +C+   +A C
Sbjct:  476 FLRVRKWTRKVDLFGKDFIFVPVNFNLHWSLIIICHPGEVANC 518
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: UPI000CED1B1D (probable ubiquitin-like-specific protease 2B isoform X1 n=3 Tax=Morus notabilis TaxID=981085 RepID=UPI000CED1B1D)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-8
Identity = 18/41 (43.90%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    4 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIA 126
            +++V++WTR  D+F  +F+F+PIN+ LHWSL  +C+   +A
Sbjct:  441 FQRVRKWTRKVDLFEKEFIFIPINFSLHWSLVVICHPGEVA 481
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BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Match: UPI00053C8877 (probable ubiquitin-like-specific protease 2B isoform X1 n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8877)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-8
Identity = 18/41 (43.90%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    4 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIA 126
            +++V++WTR  DIF   F+F+P+N+ LHWSL  +C+   +A
Sbjct:  422 FQRVRKWTRKVDIFGKDFIFIPVNFNLHWSLIVICHPSEVA 462
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15079.2956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTD8_9PHAE1.040e-1061.90ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D8LDN6_ECTSI1.950e-1059.52ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6G0XW91_9STRA8.330e-956.10ULP_PROTEASE domain-containing protein n=1 Tax=Aph... [more]
A0A0K9QML7_SPIOL2.130e-842.22ULP_PROTEASE domain-containing protein n=5 Tax=Spi... [more]
A0A803MEJ1_CHEQI2.130e-845.24ULP_PROTEASE domain-containing protein n=8 Tax=Che... [more]
A0A443NFP0_9MAGN3.980e-846.34Peptidase C48 n=1 Tax=Cinnamomum micranthum f. kan... [more]
UPI0002C32EDC5.450e-844.19probable ubiquitin-like-specific protease 2B isofo... [more]
A0A6J0KSD7_RAPSA7.450e-844.19probable ubiquitin-like-specific protease 2B n=2 T... [more]
UPI000CED1B1D7.450e-843.90probable ubiquitin-like-specific protease 2B isofo... [more]
UPI00053C88777.450e-843.90probable ubiquitin-like-specific protease 2B isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15079contigE-siliculosus-1a_F_contig15079:817..951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size135
Model size135
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko01000,ko01002,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.22.68
EggNOG OGsCOG5160@1,KOG0779@2759
EggNOG free text desc.protein modification by small protein removal
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
KEGG koko:K08596
Seed eggNOG ortholog2880.D8LDN6
Seed ortholog evalue1.1e-07
Seed ortholog score61.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928019.3888044-CDS-E-siliculosus-1a_F_contig15079:816..9511622928019.3888044-CDS-E-siliculosus-1a_F_contig15079:816..951Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15079 817..951 -
1696318774.464442-CDS-E-siliculosus-1a_F_contig15079:816..9511696318774.464442-CDS-E-siliculosus-1a_F_contig15079:816..951Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15079 817..951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15079.2956.1prot_E-siliculosus-1a_F_contig15079.2956.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15079 817..951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15079.2956.1

>prot_E-siliculosus-1a_F_contig15079.2956.1 ID=prot_E-siliculosus-1a_F_contig15079.2956.1|Name=mRNA_E-siliculosus-1a_F_contig15079.2956.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=45bp
GYRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDAIAVCN
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mRNA from alignment at E-siliculosus-1a_F_contig15079:817..951-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15079.2956.1 ID=mRNA_E-siliculosus-1a_F_contig15079.2956.1|Name=mRNA_E-siliculosus-1a_F_contig15079.2956.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=135bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15079:817..951- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGATATCGGAAGGTTAAGCGTTGGACCCGGGGCGCTGATATCTTCAACAT
GAAGTTTGTCTTCGTGCCGATCAACTACAGGTTGCACTGGAGCCTTGCGT
GCCTCTGCAACCTCGACGCTATAGCGGTATGTAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15079:817..951-

>mRNA_E-siliculosus-1a_F_contig15079.2956.1 ID=mRNA_E-siliculosus-1a_F_contig15079.2956.1|Name=mRNA_E-siliculosus-1a_F_contig15079.2956.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15079:817..951- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGATATCGGAAGGTTAAGCGTTGGACCCGGGGCGCTGATATCTTCAACAT
GAAGTTTGTCTTCGTGCCGATCAACTACAGGTTGCACTGGAGCCTTGCGT
GCCTCTGCAACCTCGACGCTATAGCGGTATGTAACGGATATCGGAAGGTT
AAGCGTTGGACCCGGGGCGCTGATATCTTCAACATGAAGTTTGTCTTCGT
GCCGATCAACTACAGGTTGCACTGGAGCCTTGCGTGCCTCTGCAACCTCG
ACGCTATAGCGGTATGTAAC
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